Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 8.7e-165 583.6 295 100.0
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.2e-108 397.1 275 74.9
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.8e-70 269.6 282 56.4
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.2e-68 264.2 284 56.0
Rhsim10G0044600 Rhododendron simsii HOM05D005220 ORTHO05D006082 6.4e-67 258.5 150 89.3
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.3e-54 217.6 325 46.5
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 5.3e-53 212.2 329 44.1
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 6.9e-53 211.8 316 44.0
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 3.9e-48 196.1 303 45.9
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.3e-47 193.0 311 46.3
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 3.7e-46 189.5 314 44.3
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 1.1e-45 188.0 282 46.1
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 2.4e-45 186.8 325 39.7
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 2.6e-44 183.3 316 42.7
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 6.5e-43 178.7 262 45.8
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 6.5e-43 178.7 262 45.8
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.5e-42 176.8 333 40.5
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 4.2e-42 176.0 289 42.6
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 1.6e-41 174.1 286 43.0
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 6.1e-41 172.2 278 42.1
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 2.5e-39 166.8 320 39.4
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 3.3e-39 166.4 252 44.8
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 5.7e-39 165.6 303 39.3
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 7.4e-39 165.2 181 51.4
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 7.4e-39 165.2 287 41.8
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 3.7e-38 162.9 284 41.5
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.4e-37 161.0 326 40.8
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.1e-37 159.8 322 40.1
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 5.3e-37 159.1 315 40.0
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 9.1e-37 158.3 331 38.4
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 9.1e-37 158.3 247 41.7
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.5e-36 157.5 314 41.7
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.5e-36 157.5 316 39.2
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 7.7e-36 155.2 174 54.0
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 7.7e-36 155.2 284 38.4
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 8.5e-35 151.8 300 38.7
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 4.2e-34 149.4 165 50.3
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 1.2e-33 147.9 285 39.6
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 2.7e-33 146.7 162 51.2
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 3.6e-33 146.4 164 49.4
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 6.1e-33 145.6 146 53.4
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.3e-32 143.7 166 53.0
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 3.0e-32 143.3 162 48.1
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 6.7e-32 142.1 166 50.6
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 6.7e-32 142.1 165 47.3
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 1.1e-31 141.4 179 45.8
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 1.1e-31 141.4 157 47.1
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 1.5e-31 141.0 166 51.8
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 9.7e-31 138.3 223 39.5
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.7e-30 137.5 301 35.9
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.7e-30 136.3 140 52.9
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 4.8e-30 136.0 157 47.1
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 6.3e-30 135.6 297 37.4
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 1.1e-29 134.8 249 39.4
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.1e-29 134.8 317 34.7
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 1.4e-29 134.4 339 36.0
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 1.4e-29 134.4 172 46.5
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 3.1e-29 133.3 139 56.1
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 4.1e-29 132.9 324 34.6
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 5.3e-29 132.5 153 51.0
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 1.2e-28 131.3 332 34.9
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 2.0e-28 130.6 198 41.4
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 3.5e-28 129.8 167 44.9
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 4.5e-28 129.4 170 43.5
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 5.9e-28 129.0 149 48.3
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 7.7e-28 128.6 147 49.7
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.0e-27 128.3 311 35.4
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.0e-27 128.3 154 48.1
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 2.2e-27 127.1 288 36.5
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 3.8e-27 126.3 264 37.1
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 1.9e-26 124.0 143 46.9
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 3.2e-26 123.2 158 45.6
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 4.2e-26 122.9 351 31.3
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 7.2e-26 122.1 144 47.9
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 1.2e-25 121.3 154 44.8
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 1.6e-25 120.9 163 42.3
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 2.1e-25 120.6 164 45.7
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 3.6e-25 119.8 255 34.5
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 4.7e-25 119.4 151 41.7
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 4.7e-25 119.4 160 42.5
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 4.7e-25 119.4 146 45.9
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 6.1e-25 119.0 255 36.5
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 8.0e-25 118.6 143 47.6
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 8.0e-25 118.6 173 39.9
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 1.0e-24 118.2 146 48.6
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.0e-24 118.2 146 48.6
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.0e-24 118.2 143 47.6
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 1.0e-24 118.2 340 31.2
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 1.4e-24 117.9 160 45.0
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 3.0e-24 116.7 289 35.3
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 3.9e-24 116.3 169 40.2
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 6.7e-24 115.5 153 44.4
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 6.7e-24 115.5 269 35.3
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 8.8e-24 115.2 304 33.9
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.5e-23 114.4 146 44.5
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.5e-23 114.4 169 40.2
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 2.0e-23 114.0 169 39.6
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 4.4e-23 112.8 307 31.9
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 1.7e-22 110.9 129 48.1
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 3.7e-22 109.8 294 33.0
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.7e-22 109.8 145 42.1
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 4.8e-22 109.4 274 33.9
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 1.1e-21 108.2 272 34.9
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 7.7e-20 102.1 125 42.4
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 1.0e-19 101.7 330 30.9
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.7e-19 100.9 171 38.6
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 1.7e-19 100.9 132 46.2
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 2.2e-19 100.5 193 36.3
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 8.5e-19 98.6 178 37.1
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 1.1e-18 98.2 134 45.5
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.9e-18 97.4 146 39.7
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 2.5e-18 97.1 181 38.1
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 3.2e-18 96.7 164 37.2
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 3.2e-18 96.7 177 35.0
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 7.2e-18 95.5 156 37.8
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 2.1e-17 94.0 177 39.5
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 2.1e-17 94.0 155 38.7
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.8e-16 90.9 191 34.0
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 6.8e-16 89.0 178 36.0
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 6.8e-16 89.0 158 35.4
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 1.2e-15 88.2 175 34.3
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 7.5e-15 85.5 62 69.4
Prupe.2G102500 Prunus persica HOM05D005220 ORTHO05D006082 3.7e-14 83.2 144 38.2
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 4.8e-14 82.8 143 37.1
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 6.3e-14 82.4 137 38.0
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 1.1e-13 81.6 120 40.0
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.4e-13 81.3 138 39.1
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 1.4e-13 81.3 143 37.8
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.8e-13 80.9 133 37.6
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 2.4e-13 80.5 135 37.8
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 5.3e-13 79.3 83 53.0
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 5.3e-13 79.3 135 37.0
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.2e-12 78.2 137 35.0
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.1e-10 71.6 156 34.0
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 7.2e-10 68.9 135 35.6
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 2.1e-09 67.4 141 30.5
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.6e-09 66.6 132 36.4
Lsat_1_v5_gn_4_109841 Lactuca sativa HOM05D005220 ORTHO05D006082 1.4e-08 64.7 149 36.2
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 2.3e-08 63.9 141 32.6
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 4.0e-08 63.2 123 35.8
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 4.0e-08 63.2 123 35.8
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 5.2e-08 62.8 221 27.1
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 6.8e-08 62.4 191 26.2
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 6.8e-08 62.4 167 30.5
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 6.8e-08 62.4 167 29.3
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 8.8e-08 62.0 124 32.3
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.2e-07 61.6 172 29.1
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 1.2e-07 61.6 226 27.4
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 1.5e-07 61.2 164 31.7
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 2.0e-07 60.8 146 29.5
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 2.0e-07 60.8 183 27.9
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 2.6e-07 60.5 134 35.1
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 3.4e-07 60.1 177 29.4
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.4e-07 60.1 212 25.9
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 5.7e-07 59.3 130 31.5
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 5.7e-07 59.3 250 23.2
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 7.5e-07 58.9 129 31.8
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 7.5e-07 58.9 130 31.5
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 1.7e-06 57.8 144 26.4
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 4.8e-06 56.2 190 28.4
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 4.8e-06 56.2 196 27.6
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 4.8e-06 56.2 169 28.4
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 6.3e-06 55.8 227 26.0
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 6.3e-06 55.8 194 28.9
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 8.3e-06 55.5 88 35.2
ECA232G0957 Erigeron canadensis HOM05D005220 ORTHO05D006082 8.3e-06 55.5 169 25.4
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 8.3e-06 55.5 220 24.5


User provided reference genes

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