Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.5e-92 342.8 168 100.0
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.3e-85 319.7 168 94.6
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 2.0e-73 279.3 168 80.4
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.0e-69 265.4 166 78.3
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.9e-69 265.0 166 78.3
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 2.1e-67 259.2 169 75.7
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 2.0e-65 252.7 162 77.2
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 1.9e-63 246.1 162 74.7
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.9e-63 246.1 164 73.8
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 2.5e-63 245.7 168 74.4
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.2e-62 243.4 168 71.4
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.2e-62 243.4 168 71.4
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.1e-62 242.7 168 70.8
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 3.5e-62 241.9 168 72.0
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.9e-62 240.7 163 74.8
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.9e-62 240.7 163 74.8
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.0e-61 240.4 166 72.9
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.0e-61 240.4 166 72.3
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.8e-61 239.6 166 72.9
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.8e-61 239.6 166 71.7
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.0e-61 238.8 157 74.5
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 3.0e-61 238.8 168 71.4
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.1e-61 238.0 166 72.3
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 5.1e-61 238.0 168 70.2
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 6.7e-61 237.7 166 71.7
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 6.7e-61 237.7 168 71.4
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.7e-61 237.7 113 93.8
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 8.7e-61 237.3 163 72.4
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 1.1e-60 236.9 166 71.1
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 2.5e-60 235.7 167 70.1
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.5e-60 235.7 113 93.8
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 3.3e-60 235.3 169 69.8
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 7.4e-60 234.2 162 73.5
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 7.4e-60 234.2 158 72.8
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 9.7e-60 233.8 162 73.5
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 9.7e-60 233.8 163 72.4
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 9.7e-60 233.8 160 69.4
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.3e-59 233.4 113 92.9
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.6e-59 233.0 112 93.8
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 2.2e-59 232.6 113 92.0
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 2.2e-59 232.6 162 72.8
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 2.2e-59 232.6 113 91.2
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 2.2e-59 232.6 177 68.9
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 3.7e-59 231.9 167 68.3
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 3.7e-59 231.9 163 71.8
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.7e-59 231.9 166 69.9
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 4.8e-59 231.5 167 68.3
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 6.3e-59 231.1 170 68.8
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 6.3e-59 231.1 160 68.8
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 6.3e-59 231.1 166 69.3
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 6.3e-59 231.1 162 72.2
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.1e-58 230.3 112 91.1
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.1e-58 230.3 166 68.7
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.1e-58 230.3 166 69.3
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.4e-58 229.9 166 70.5
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 1.8e-58 229.6 163 69.3
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 2.4e-58 229.2 167 67.7
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 2.4e-58 229.2 113 89.4
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 3.1e-58 228.8 112 89.3
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 4.1e-58 228.4 164 68.9
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 4.1e-58 228.4 164 69.5
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 4.1e-58 228.4 168 68.5
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 5.3e-58 228.0 112 90.2
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 5.3e-58 228.0 112 90.2
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 5.3e-58 228.0 113 88.5
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 5.3e-58 228.0 112 90.2
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 6.9e-58 227.6 112 89.3
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.9e-58 227.6 163 69.9
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 6.9e-58 227.6 163 68.7
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.2e-57 226.9 112 89.3
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 2.0e-57 226.1 112 89.3
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 2.0e-57 226.1 112 89.3
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 2.0e-57 226.1 112 89.3
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 2.0e-57 226.1 112 89.3
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 2.0e-57 226.1 160 68.1
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.0e-57 226.1 112 88.4
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.6e-57 225.7 112 89.3
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 2.6e-57 225.7 158 69.0
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 5.9e-57 224.6 113 87.6
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 5.9e-57 224.6 112 87.5
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.3e-56 223.4 141 73.0
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 2.2e-56 222.6 163 66.9
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 2.2e-56 222.6 154 71.4
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 2.9e-56 222.2 170 65.9
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 5.0e-56 221.5 112 86.6
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 6.5e-56 221.1 113 87.6
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-55 220.3 158 70.3
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-55 220.3 158 70.3
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 1.1e-55 220.3 133 76.7
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 3.2e-55 218.8 154 70.1
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.2e-54 216.9 158 69.6
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 1.2e-54 216.9 112 84.8
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.2e-54 216.9 154 69.5
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 1.6e-54 216.5 156 69.9
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 2.1e-54 216.1 148 70.9
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 7.9e-54 214.2 111 84.7
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 7.9e-54 214.2 113 81.4
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.0e-53 213.8 149 69.1
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 1.8e-53 213.0 113 81.4
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 3.0e-53 212.2 149 69.8
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 3.9e-53 211.8 154 68.8
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.3e-52 208.8 190 55.8
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.3e-52 208.8 190 55.8
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.7e-52 208.0 152 68.4
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 1.3e-51 206.8 152 64.5
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.3e-51 206.8 109 83.5
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.7e-51 206.5 109 84.4
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 8.2e-51 204.1 100 91.0
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.4e-50 202.6 173 65.9
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 4.1e-50 201.8 108 79.6
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.4e-49 198.7 177 64.4
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 3.4e-49 198.7 169 63.9
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 4.5e-49 198.4 110 78.2
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.9e-49 198.0 191 57.6
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.0e-48 197.2 103 83.5
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.7e-48 196.4 107 77.6
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.2e-48 196.1 104 82.7
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.9e-48 195.7 103 82.5
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 7.2e-47 191.0 108 75.9
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 3.7e-43 178.7 113 75.2
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 4.1e-42 175.3 91 81.3
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.0e-40 168.3 129 69.0
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 5.5e-39 164.9 78 93.6
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 9.4e-39 164.1 78 92.3
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 6.1e-38 161.4 78 85.9
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.0e-37 160.6 79 91.1
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 1.7e-35 153.3 163 53.4
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.3e-35 151.4 79 87.3
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.5e-32 141.4 118 66.1
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.6e-28 129.4 103 60.2
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 8.3e-27 124.4 60 85.0
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.1e-26 122.1 167 47.3
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 9.4e-23 110.9 104 62.5
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 2.3e-21 106.3 330 29.1
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 4.0e-21 105.5 95 66.3
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 7.5e-20 101.3 62 67.7
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 1.7e-19 100.1 84 60.7
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.3e-15 84.7 52 69.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 8.9e-13 77.8 44 86.4
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 8.9e-13 77.8 38 94.7
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 6.4e-11 71.6 41 75.6
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.4e-10 68.6 40 70.0
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.4e-10 68.6 49 65.3
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 9.5e-07 57.8 30 73.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 3.6e-06 55.8 62 53.2


User provided reference genes

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