Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 2.3e-254 881.7 429 100.0
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.3e-230 802.7 430 90.2
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 6.6e-230 800.4 426 89.9
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 5.6e-229 797.3 426 89.0
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.0e-227 791.2 430 88.6
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 8.9e-227 790.0 434 89.2
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 9.2e-224 780.0 424 87.5
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.2e-223 779.6 426 87.3
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 7.8e-223 776.9 426 87.3
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 4.7e-220 767.7 426 85.0
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.4e-219 765.4 426 84.5
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 4.0e-219 764.6 426 85.0
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 5.2e-219 764.2 426 84.5
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 9.0e-219 763.5 427 85.0
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 3.4e-218 761.5 418 85.2
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.7e-217 759.2 427 84.5
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 2.2e-217 758.8 427 84.8
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 8.4e-217 756.9 426 85.0
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 7.1e-216 753.8 426 83.6
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.5e-213 746.1 416 84.6
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 4.3e-213 744.6 426 82.4
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 4.8e-212 741.1 411 84.9
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 8.1e-212 740.3 427 81.7
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 4.0e-211 738.0 426 82.2
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 9.0e-211 736.9 428 81.3
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 3.4e-210 734.9 418 82.5
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 1.3e-209 733.0 426 82.2
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.3e-209 733.0 428 81.1
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.4e-208 729.6 439 78.4
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.9e-208 729.2 426 81.2
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 3.0e-206 721.8 426 79.1
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 3.9e-206 721.5 426 80.5
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 5.1e-206 721.1 425 80.0
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 5.1e-206 721.1 426 79.3
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 9.0e-203 710.3 426 78.9
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 4.5e-202 708.0 429 78.3
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 7.6e-202 707.2 392 84.9
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 5.5e-200 701.0 433 76.9
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.2e-199 699.9 427 78.2
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 3.5e-199 698.4 394 84.5
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 5.1e-198 694.5 429 76.2
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 8.7e-198 693.7 426 76.3
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 1.5e-197 693.0 426 76.3
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 2.5e-197 692.2 427 75.6
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 2.5e-197 692.2 413 78.9
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.3e-196 689.9 449 75.5
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 2.1e-196 689.1 426 76.8
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 2.8e-196 688.7 420 76.9
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 6.2e-196 687.6 382 85.3
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.4e-195 686.4 434 75.6
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.8e-195 686.0 470 70.6
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.8e-195 686.0 434 75.6
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 9.0e-195 683.7 434 75.3
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 2.0e-194 682.6 416 76.7
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.2e-193 679.1 426 73.9
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 2.9e-193 678.7 440 75.0
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 6.0e-191 671.0 426 74.4
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 5.1e-190 667.9 421 76.7
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 2.5e-189 665.6 434 73.0
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.8e-188 662.1 446 70.0
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.8e-188 662.1 420 76.4
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 4.8e-188 661.4 419 75.7
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 6.3e-188 661.0 429 74.8
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 6.3e-188 661.0 422 74.2
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 8.2e-188 660.6 424 73.1
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 1.8e-187 659.4 420 75.5
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 3.1e-187 658.7 395 77.7
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.5e-186 656.4 421 75.1
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.5e-186 656.4 421 75.1
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 7.7e-186 654.1 429 73.0
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.7e-185 652.9 428 72.2
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.9e-184 649.4 427 70.7
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 1.5e-181 639.8 419 73.3
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 4.3e-181 638.3 367 84.2
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 5.7e-181 637.9 419 72.3
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 7.4e-181 637.5 394 75.6
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.7e-180 636.3 419 72.8
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 2.8e-180 635.6 434 69.4
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 6.9e-179 630.9 425 70.8
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 6.9e-179 630.9 452 67.9
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.0e-178 629.4 456 71.9
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 5.9e-178 627.9 428 70.3
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 5.0e-177 624.8 426 70.2
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 2.5e-176 622.5 394 73.9
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 7.2e-176 620.9 419 71.6
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.6e-175 619.8 424 71.0
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 3.3e-173 612.1 489 63.6
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 4.1e-171 605.1 420 69.0
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 9.1e-171 604.0 428 67.1
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 5.0e-169 598.2 381 75.9
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.6e-162 575.9 431 68.0
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 4.5e-162 575.1 338 79.3
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 2.9e-161 572.4 418 67.9
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 5.5e-160 568.2 385 73.8
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.6e-157 559.3 435 68.0
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 7.5e-157 557.8 422 61.4
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 6.3e-156 554.7 426 66.0
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 8.8e-150 534.3 426 60.3
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 8.6e-145 517.7 399 65.7
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.9e-144 516.5 356 68.0
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 5.7e-141 505.0 401 62.1
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.7e-132 476.9 302 74.2
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.2e-127 460.7 424 58.7
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 2.0e-125 453.4 284 76.8
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 5.8e-125 451.8 283 76.3
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 7.5e-125 451.4 283 76.7
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.4e-123 446.4 421 53.9
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.0e-121 441.0 422 51.9
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 3.3e-120 436.0 426 55.2
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 2.9e-116 422.9 446 52.0
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 9.2e-115 417.9 419 52.7
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 2.0e-109 400.2 427 48.0
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.6e-103 380.6 626 39.3
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 4.2e-99 365.9 432 46.1
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 2.1e-95 353.6 269 62.5
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 9.0e-94 348.2 287 61.0
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 1.6e-90 337.4 217 71.9
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 5.6e-88 328.9 680 33.7
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 9.6e-88 328.2 265 61.5
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 7.9e-66 255.4 532 34.0
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 3.7e-63 246.5 318 45.9
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 7.4e-56 222.2 145 73.1
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.5e-53 213.4 155 67.7
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 9.7e-48 195.3 122 73.8
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 3.8e-44 183.3 107 77.6
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 4.1e-38 163.3 288 36.8
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 9.1e-38 162.2 149 52.3
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.2e-37 161.8 288 36.8
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 5.2e-33 146.4 112 65.2
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 2.8e-31 140.6 81 81.5
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 8.0e-26 122.5 65 89.2
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 2.0e-24 117.9 85 62.4
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.7e-21 107.5 58 86.2
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 1.0e-17 95.5 501 24.2
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 1.4e-17 95.1 58 77.6
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 4.0e-17 93.6 67 61.2
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.0e-12 79.0 56 55.4
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 1.1e-09 68.9 43 67.4
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 3.1e-09 67.4 44 72.7
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 7.5e-08 62.8 54 57.4
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 7.1e-06 56.2 42 52.4


User provided reference genes

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