Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.5e-245 852.4 432 100.0
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 2.6e-226 788.5 430 90.9
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.0e-205 719.2 430 84.0
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 5.7e-205 717.6 430 84.0
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.4e-200 703.0 431 82.4
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 7.2e-200 700.7 436 82.1
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.3e-198 695.7 430 81.6
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 7.4e-189 664.1 426 78.6
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.4e-187 659.8 427 76.8
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.2e-186 656.8 425 77.9
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 8.5e-185 650.6 430 75.1
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 8.5e-185 650.6 426 77.5
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.1e-184 650.2 430 74.7
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.9e-184 649.4 426 77.7
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 2.5e-184 649.0 430 75.3
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.6e-183 646.4 430 74.4
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.1e-183 646.0 430 75.8
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.0e-182 643.7 430 74.4
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.4e-182 643.3 423 75.7
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 5.2e-182 641.3 426 77.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.2e-181 640.2 422 76.8
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 3.3e-181 638.6 426 76.8
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.3e-180 636.7 433 75.1
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 1.7e-180 636.3 435 75.4
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 8.3e-180 634.0 426 75.6
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.4e-179 633.3 431 72.4
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.8e-179 632.9 430 75.3
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.4e-179 632.5 426 75.4
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 4.1e-179 631.7 430 72.3
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.2e-178 630.2 426 74.9
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.6e-178 629.8 426 74.2
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 2.7e-178 629.0 426 74.4
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.7e-178 629.0 426 75.4
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 4.5e-178 628.2 426 75.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 5.9e-178 627.9 426 74.6
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.8e-177 625.2 426 73.7
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 5.0e-177 624.8 426 75.1
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 5.0e-177 624.8 422 73.9
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 8.5e-177 624.0 426 74.2
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 4.2e-176 621.7 426 74.4
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 4.2e-176 621.7 426 74.6
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 5.5e-176 621.3 426 73.5
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 7.2e-176 620.9 426 73.7
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.7e-175 619.0 430 72.3
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 3.6e-175 618.6 430 73.0
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 8.0e-175 617.5 426 73.2
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.0e-174 617.1 426 73.7
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 4.0e-174 615.1 426 73.5
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.5e-173 613.2 422 73.2
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.5e-173 613.2 426 73.2
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 2.6e-173 612.5 426 73.7
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 3.4e-173 612.1 430 71.6
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 5.7e-173 611.3 428 73.8
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.3e-172 610.1 422 73.0
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.8e-172 609.0 422 72.7
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.1e-171 607.1 426 71.8
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-171 606.7 426 72.5
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 2.0e-170 602.8 435 72.6
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 3.5e-170 602.1 433 70.9
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.0e-169 600.5 428 70.8
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 1.3e-169 600.1 422 72.0
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 1.5e-168 596.7 427 72.1
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.1e-167 592.8 422 73.5
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 8.0e-167 590.9 429 69.7
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.4e-166 590.1 428 70.6
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.8e-166 589.7 460 68.3
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.2e-165 587.0 430 70.7
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.2e-165 587.0 437 70.0
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 4.4e-165 585.1 426 70.4
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 4.4e-165 585.1 430 71.6
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 5.7e-165 584.7 427 70.5
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.7e-165 584.7 464 66.4
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.7e-164 583.2 424 70.5
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 3.1e-163 578.9 403 71.7
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.2e-162 577.0 428 69.6
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.6e-162 576.6 423 67.8
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 2.0e-162 576.2 423 71.9
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 3.5e-162 575.5 459 67.3
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.7e-161 573.2 430 68.8
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 2.9e-161 572.4 428 69.2
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.2e-159 567.0 428 68.5
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.6e-159 565.5 423 66.2
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 2.2e-156 556.2 427 66.3
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 2.9e-156 555.8 426 66.2
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 3.7e-156 555.4 427 66.7
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 6.4e-156 554.7 427 68.4
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 6.4e-156 554.7 423 66.2
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.9e-155 553.1 427 66.0
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 3.2e-155 552.4 428 66.1
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 3.2e-155 552.4 428 66.1
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 3.2e-155 552.4 423 66.0
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 4.1e-155 552.0 427 66.0
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.2e-154 550.4 428 67.3
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 4.6e-154 548.5 426 68.3
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.0e-154 548.1 426 66.4
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.5e-152 543.5 426 66.7
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 3.3e-152 542.3 384 72.9
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 4.3e-152 542.0 420 63.8
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 2.1e-151 539.7 427 65.3
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 5.2e-150 535.0 426 64.1
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 5.2e-150 535.0 426 64.1
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 2.0e-149 533.1 440 65.7
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.0e-149 533.1 426 64.3
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.6e-149 532.7 324 81.5
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 9.8e-149 530.8 427 64.6
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 1.7e-148 530.0 426 63.6
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.2e-148 529.6 426 63.4
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 3.7e-148 528.9 427 65.3
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.9e-148 528.5 426 67.1
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 3.2e-147 525.8 427 64.2
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.2e-146 523.9 426 63.1
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.6e-146 523.5 427 63.9
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.1e-146 523.1 427 64.2
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.7e-146 522.7 313 82.4
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 3.9e-145 518.8 427 62.5
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 9.5e-144 514.2 383 68.1
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 8.1e-143 511.1 360 70.3
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.9e-139 500.0 387 66.9
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 9.2e-139 497.7 426 61.5
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 5.6e-136 488.4 423 61.5
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.4e-133 479.2 444 58.6
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 5.4e-131 471.9 430 56.5
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.7e-129 466.8 424 57.1
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.9e-128 463.4 428 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 1.1e-126 457.6 452 54.4
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 3.2e-123 446.0 387 62.8
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 4.6e-114 415.6 395 57.2
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.0e-113 414.5 239 87.0
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 6.2e-111 405.2 431 50.8
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.4e-110 403.3 241 85.1
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 4.5e-109 399.1 433 55.9
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-102 377.9 355 58.9
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 4.5e-101 372.5 285 64.2
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 5.8e-101 372.1 337 59.1
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.3e-100 370.9 356 58.1
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 6.3e-71 272.3 431 38.3
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.7e-69 265.4 214 64.0
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 3.2e-67 260.0 325 48.0
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 7.7e-61 238.8 348 39.4
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.0e-60 238.4 190 66.3
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-56 224.9 367 41.7
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.8e-55 220.3 194 62.4
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.1e-51 208.4 305 44.3
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 4.0e-49 199.9 194 57.2
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.4e-46 191.4 142 64.8
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.2e-42 178.3 252 46.4
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 2.8e-34 150.6 325 31.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 4.7e-34 149.8 172 50.0
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.9e-30 137.9 119 58.0
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 7.1e-30 136.0 105 68.6
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 1.8e-25 121.3 126 50.0
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.3e-23 115.2 78 67.9
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.3e-23 115.2 78 67.9
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 1.7e-23 114.8 78 70.5
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 4.3e-19 100.1 407 22.9
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 8.4e-15 85.9 48 85.4
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 9.3e-14 82.4 63 68.3
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.7e-12 78.2 67 59.7
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 2.5e-11 74.3 53 75.5
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 1.1e-09 68.9 48 68.8
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.1e-09 68.9 48 68.8
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 5.3e-09 66.6 213 27.7
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 9.0e-09 65.9 213 27.7
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 9.0e-09 65.9 213 27.7
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.2e-08 65.5 213 27.7
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 1.2e-08 65.5 213 27.7
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 1.2e-08 65.5 214 29.4
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.5e-08 65.1 213 27.7
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.5e-08 65.1 213 27.7
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 1.5e-08 65.1 213 27.7
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.0e-08 64.7 213 27.7
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.6e-08 64.3 49 61.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.6e-08 64.3 49 61.2
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 2.6e-08 64.3 214 29.4
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 4.4e-08 63.5 75 46.7
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 27.7
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 27.7
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 27.7
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 27.7
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 27.7
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 7.6e-08 62.8 213 27.2
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 7.6e-08 62.8 213 27.2
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 7.6e-08 62.8 213 27.2
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 7.6e-08 62.8 49 65.3
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 7.6e-08 62.8 213 27.2
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 8.4e-07 59.3 37 70.3
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 1.4e-06 58.5 50 60.0
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 7.1e-06 56.2 190 24.7


User provided reference genes

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