Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 2.3e-182 642.1 328 100.0
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 3.5e-154 548.5 325 87.1
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 2.4e-139 499.2 326 80.7
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 3.5e-138 495.4 330 80.6
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 3.0e-134 482.3 326 78.5
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 8.9e-134 480.7 325 76.9
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 8.3e-132 474.2 324 76.2
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 7.8e-130 467.6 328 75.6
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 1.1e-128 463.8 327 75.5
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 2.5e-128 462.6 322 75.8
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 9.5e-128 460.7 331 73.7
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 1.6e-127 459.9 326 74.2
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 2.1e-127 459.5 326 73.9
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 2.1e-127 459.5 329 73.6
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 6.2e-127 458.0 289 81.3
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 1.8e-126 456.4 333 73.3
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 4.0e-126 455.3 280 81.8
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 8.9e-126 454.1 282 81.6
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 8.9e-126 454.1 326 74.5
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.5e-125 453.4 323 74.3
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.5e-125 453.4 339 71.4
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.5e-125 453.4 326 73.3
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 1.5e-125 453.4 323 72.8
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.0e-125 453.0 328 72.6
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 2.0e-125 453.0 329 70.5
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 2.6e-125 452.6 320 73.8
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 2.6e-125 452.6 333 70.0
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 3.4e-125 452.2 284 80.3
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.4e-125 452.2 323 73.4
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 1.3e-124 450.3 323 72.8
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 1.3e-124 450.3 299 77.9
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 2.9e-124 449.1 282 80.1
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 3.7e-124 448.7 323 71.2
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 4.9e-124 448.4 309 76.4
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.9e-124 448.4 331 71.9
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 4.9e-124 448.4 318 74.2
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 6.4e-124 448.0 310 75.8
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 8.3e-124 447.6 301 75.7
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 1.4e-123 446.8 325 73.5
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 1.9e-123 446.4 329 72.0
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 2.4e-123 446.0 275 82.9
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 2.4e-123 446.0 282 79.4
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 2.4e-123 446.0 282 79.4
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 3.2e-123 445.7 330 72.1
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 3.2e-123 445.7 291 77.7
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 5.4e-123 444.9 325 73.2
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 5.4e-123 444.9 332 72.0
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 5.4e-123 444.9 290 78.3
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 1.6e-122 443.4 320 72.2
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 2.7e-122 442.6 321 71.7
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 3.5e-122 442.2 328 72.3
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 4.6e-122 441.8 320 72.8
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 6.0e-122 441.4 338 71.0
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 1.7e-121 439.9 324 71.9
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 3.9e-121 438.7 330 69.1
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 3.9e-121 438.7 295 75.3
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 6.6e-121 438.0 326 71.5
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.9e-120 436.4 306 74.2
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 1.9e-120 436.4 293 75.8
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 2.5e-120 436.0 317 73.2
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.5e-120 436.0 332 72.0
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 3.3e-120 435.6 293 77.1
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 3.3e-120 435.6 282 78.7
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.3e-120 435.3 291 76.3
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 5.6e-120 434.9 283 78.4
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 5.6e-120 434.9 297 74.4
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.5e-120 434.1 291 75.9
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.2e-119 433.7 286 75.9
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 1.6e-119 433.3 314 73.2
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 1.6e-119 433.3 264 81.4
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 3.6e-119 432.2 299 76.3
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 6.2e-119 431.4 293 76.8
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 6.2e-119 431.4 296 75.0
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 8.1e-119 431.0 293 76.8
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 1.1e-118 430.6 293 76.8
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.1e-118 430.6 292 75.7
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 1.8e-118 429.9 293 76.5
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 2.3e-118 429.5 294 76.2
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 5.2e-118 428.3 278 79.5
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 5.2e-118 428.3 294 76.2
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 8.9e-118 427.6 294 76.2
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 3.4e-117 425.6 280 77.9
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 2.2e-116 422.9 309 70.2
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 4.9e-116 421.8 269 78.1
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 7.1e-115 417.9 292 71.2
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 2.3e-113 412.9 260 76.9
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.2e-111 407.1 276 74.6
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.1e-110 404.1 276 74.3
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.2e-109 400.6 251 81.7
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 1.5e-109 400.2 273 72.9
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 3.4e-109 399.1 338 66.3
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 1.3e-108 397.1 272 71.7
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 4.9e-108 395.2 344 61.9
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.4e-100 368.2 260 75.8
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.2e-98 364.0 211 89.1
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 5.6e-96 355.1 322 63.4
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.3e-95 354.0 235 75.7
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 5.3e-94 348.6 222 79.7
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 2.0e-93 346.7 227 77.1
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.5e-93 345.5 222 78.8
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 4.2e-91 339.0 265 62.3
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 6.6e-89 331.6 245 71.8
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.9e-88 330.1 244 74.2
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 2.5e-88 329.7 266 59.4
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.2e-85 320.9 245 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 8.4e-84 314.7 201 77.1
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.4e-83 313.9 245 68.6
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 9.3e-83 311.2 249 66.3
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.5e-80 303.9 231 69.3
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.2e-75 286.2 311 55.0
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 7.9e-74 281.6 266 52.3
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 7.2e-67 258.5 152 82.9
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 8.2e-63 245.0 195 63.1
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 1.7e-55 220.7 212 56.6
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.6e-53 213.4 159 71.7
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 1.2e-50 204.5 279 43.4
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 1.4e-49 201.1 333 40.5
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 5.7e-48 195.7 120 78.3
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 4.8e-47 192.6 149 65.8
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.0e-44 184.9 116 78.4
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 1.1e-43 181.4 107 84.1
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 3.2e-43 179.9 264 42.0
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 3.2e-43 179.9 128 70.3
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 4.2e-35 152.9 337 35.3
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 2.2e-28 130.6 271 31.7
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 1.9e-27 127.5 78 84.6
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.2e-27 126.3 73 87.7
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 6.1e-26 122.5 76 78.9
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.7e-23 114.4 63 90.5
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 3.7e-23 113.2 334 27.5
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.6e-21 107.8 78 69.2
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 2.9e-20 103.6 125 51.2
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.9e-19 100.9 107 51.4
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 4.6e-13 79.7 73 63.0
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 4.6e-13 79.7 73 63.0
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 2.3e-12 77.4 177 34.5
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 3.6e-10 70.1 41 80.5
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 6.4e-07 59.3 59 55.9
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 3.2e-06 57.0 46 54.3


User provided reference genes

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