Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0190800 Rhododendron simsii HOM05D001654 ORTHO05D002235 2.4e-141 505.8 304 100.0
Rhsim09G0002000 Rhododendron simsii HOM05D001654 ORTHO05D002235 5.6e-82 308.5 273 71.8
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 1.1e-48 198.0 136 83.1
Rhsim09G0190600 Rhododendron simsii HOM05D001654 ORTHO05D002235 1.1e-40 171.4 179 66.5
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.9e-21 107.5 160 49.4
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 5.5e-21 105.9 227 41.0
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 5.5e-21 105.9 152 48.0
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.6e-20 104.4 161 47.2
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 4.4e-18 96.3 154 50.6
CSS0036404 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 4.4e-18 96.3 154 50.6
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 1.7e-14 84.3 117 53.0
Gohir.A01G182600 Gossypium hirsutum HOM05D001654 ORTHO05D002773 5.5e-13 79.3 97 51.5
Atru.chr6.763 Acer truncatum HOM05D001654 ORTHO05D002773 3.0e-11 73.6 113 44.2
PGR042G3227 Punica granatum HOM05D001654 ORTHO05D002773 3.0e-11 73.6 113 44.2
RcHm_v2.0_Chr1g0317081 Rosa chinensis HOM05D001654 ORTHO05D002773 3.0e-11 73.6 113 44.2
GSVIVG01023274001 Vitis vinifera HOM05D001654 ORTHO05D002773 3.0e-11 73.6 113 46.0
Actinidia06471 Actinidia chinensis HOM05D001654 ORTHO05D002773 4.0e-11 73.2 107 45.8
Haze_14471 Corylus avellana HOM05D003021 ORTHO05D002235 4.0e-11 73.2 117 47.0
FvH4_7g01380 Fragaria vesca HOM05D001654 ORTHO05D002773 4.0e-11 73.2 113 43.4
FAN06G2452 Fragaria x ananassa HOM05D001654 ORTHO05D002773 4.0e-11 73.2 113 43.4
Thecc.02G023300 Theobroma cacao HOM05D001654 ORTHO05D002773 4.0e-11 73.2 112 44.6
Cfa004509 Carpinus fangiana HOM05D001654 ORTHO05D002773 5.2e-11 72.8 113 45.1
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 5.2e-11 72.8 113 45.1
Actinidia26164 Actinidia chinensis HOM05D001654 ORTHO05D002773 6.7e-11 72.4 113 44.2
FAN03G0897 Fragaria x ananassa HOM05D001654 ORTHO05D002773 6.7e-11 72.4 112 43.8
FAN10G2163 Fragaria x ananassa HOM05D001654 ORTHO05D002773 8.8e-11 72.0 113 42.5
Aqoxy6G00125 Aquilegia oxysepala HOM05D001654 ORTHO05D002773 1.1e-10 71.6 108 44.4
CANSAT54G0695 Cannabis sativa HOM05D001654 ORTHO05D002773 1.1e-10 71.6 113 43.4
Cfa007625 Carpinus fangiana HOM05D003021 ORTHO05D002235 1.1e-10 71.6 116 44.8
MD15G1433600 Malus domestica HOM05D001654 ORTHO05D002773 1.1e-10 71.6 113 44.2
Cc02_g23000 Coffea canephora HOM05D001654 ORTHO05D002773 1.5e-10 71.2 112 43.8
Gohir.A04G132800 Gossypium hirsutum HOM05D001654 ORTHO05D002773 1.5e-10 71.2 113 42.5
TAR381G0191 Trochodendron aralioides HOM05D001654 ORTHO05D002773 1.5e-10 71.2 112 44.6
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 2.0e-10 70.9 112 42.9
Gorai.002G215800 Gossypium raimondii HOM05D001654 ORTHO05D002773 2.0e-10 70.9 113 43.4
FAN01G0458 Fragaria x ananassa HOM05D001654 ORTHO05D002773 2.6e-10 70.5 113 41.6
FAN01G1194 Fragaria x ananassa HOM05D001654 ORTHO05D002773 2.6e-10 70.5 113 41.6
MD08G1240400 Malus domestica HOM05D001654 ORTHO05D002773 2.6e-10 70.5 113 44.2
Manes.02G223600 Manihot esculenta HOM05D001654 ORTHO05D002773 2.6e-10 70.5 113 44.2
Rhsim02G0076500 Rhododendron simsii HOM05D001654 ORTHO05D002773 2.6e-10 70.5 111 44.1
CSS0034043 Camellia sinensis var. sinensis HOM05D001654 ORTHO05D002773 4.4e-10 69.7 114 43.0
CSS0043588 Camellia sinensis var. sinensis HOM05D001654 ORTHO05D002773 4.4e-10 69.7 114 43.0
Ciclev10002359m.g Citrus clementina HOM05D001654 ORTHO05D002773 4.4e-10 69.7 113 42.5
Dinv19399 Davidia involucrata HOM05D001654 ORTHO05D002773 4.4e-10 69.7 113 42.5
Gohir.D04G176400 Gossypium hirsutum HOM05D001654 ORTHO05D002773 4.4e-10 69.7 113 39.8
Gorai.012G168000 Gossypium raimondii HOM05D001654 ORTHO05D002773 4.4e-10 69.7 113 39.8
arahy.Tifrunner.gnm1.ann1.MKF9WG Arachis hypogaea HOM05D001654 ORTHO05D002773 5.7e-10 69.3 113 42.5
arahy.Tifrunner.gnm1.ann1.UW8EWK Arachis hypogaea HOM05D001654 ORTHO05D002773 5.7e-10 69.3 113 42.5
Eucgr.G00348 Eucalyptus grandis HOM05D001654 ORTHO05D002773 5.7e-10 69.3 113 43.4
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 7.5e-10 68.9 113 41.6
Gohir.D01G173700 Gossypium hirsutum HOM05D001654 ORTHO05D002773 7.5e-10 68.9 113 43.4
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 9.7e-10 68.6 113 41.6
ClCG11G013330 Citrullus lanatus HOM05D001654 ORTHO05D002773 9.7e-10 68.6 111 41.4
TAR628G1090 Trochodendron aralioides HOM05D001654 ORTHO05D002773 9.7e-10 68.6 113 42.5
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 1.3e-09 68.2 119 46.2
Manes.10G119902 Manihot esculenta HOM05D001654 ORTHO05D002773 1.7e-09 67.8 147 36.7
MELO3C011825.2 Cucumis melo HOM05D001654 ORTHO05D002773 2.2e-09 67.4 113 40.7
DCAR_029272 Daucus carota HOM05D001654 ORTHO05D002773 2.2e-09 67.4 115 45.2
Lj9A300T37 Lonicera japonica HOM05D001654 ORTHO05D002773 2.8e-09 67.0 114 44.7
QL02p100173 Quercus lobata HOM05D001654 ORTHO05D002773 2.8e-09 67.0 108 42.6
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 3.7e-09 66.6 103 45.6
CiPaw.05G005900 Carya illinoinensis HOM05D001654 ORTHO05D002773 4.8e-09 66.2 103 44.7
Duzib248G1383 Durio zibethinus HOM05D001654 ORTHO05D002773 4.8e-09 66.2 116 42.2
Potri.003G009300 Populus trichocarpa HOM05D001654 ORTHO05D002773 4.8e-09 66.2 107 43.0
Sc07g0004590 Simmondsia chinensis HOM05D001654 ORTHO05D002773 4.8e-09 66.2 131 38.2
VMungo0540G0123 Vigna mungo HOM05D001654 ORTHO05D002773 4.8e-09 66.2 107 43.0
Prupe.1G577000 Prunus persica HOM05D001654 ORTHO05D002773 6.3e-09 65.9 107 43.9
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 6.3e-09 65.9 107 51.4
Zm00001eb201220 Zea mays HOM05D001654 ORTHO05D002773 6.3e-09 65.9 107 42.1
ATR1134G081 Amborella trichopoda HOM05D001654 ORTHO05D002773 8.2e-09 65.5 115 40.9
TWI59G1035 Tripterygium wilfordii HOM05D001654 ORTHO05D002773 8.2e-09 65.5 106 41.5
ECA234G1780 Erigeron canadensis HOM05D000755 ORTHO05D000642 1.1e-08 65.1 107 43.0
Hma1.2p1_0427F.1_g150720 Hydrangea macrophylla HOM05D001654 ORTHO05D002773 1.1e-08 65.1 113 39.8
CiPaw.10G108200 Carya illinoinensis HOM05D001654 ORTHO05D002773 1.4e-08 64.7 119 40.3
Os11g0181500 Oryza sativa ssp. japonica HOM05D001654 ORTHO05D002773 1.4e-08 64.7 104 43.3
TPR.G2150 Trifolium pratense HOM05D001654 ORTHO05D002773 1.4e-08 64.7 112 41.1
Oeu000129.1 Olea europaea HOM05D001654 ORTHO05D002773 1.8e-08 64.3 107 42.1
Psat1g223440 Pisum sativum HOM05D001654 ORTHO05D002773 1.8e-08 64.3 112 40.2
BcaB01g02932 Brassica carinata HOM05D001654 ORTHO05D002773 2.4e-08 63.9 97 44.3
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 2.4e-08 63.9 117 46.2
Lsat_1_v5_gn_7_76401 Lactuca sativa HOM05D001654 ORTHO05D002773 2.4e-08 63.9 104 43.3
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 3.1e-08 63.5 113 44.2
Cpa.g.sc30.41 Carica papaya HOM05D001654 ORTHO05D002773 4.1e-08 63.2 106 40.6
unitig_747.g21265 Utricularia gibba HOM05D001654 ORTHO05D002773 4.1e-08 63.2 115 40.9
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 5.3e-08 62.8 160 36.9
SalBow3G1717 Salvia bowleyana HOM05D001654 ORTHO05D002773 5.3e-08 62.8 129 38.0
THA.LOC104799819 Tarenaya hassleriana HOM05D001654 ORTHO05D002773 5.3e-08 62.8 107 44.9
CiPaw.01G010200 Carya illinoinensis HOM05D001654 ORTHO05D002773 7.0e-08 62.4 113 40.7
Lj6g0014097 Lotus japonicus HOM05D001654 ORTHO05D002773 7.0e-08 62.4 112 40.2
PSO782G4022 Papaver somniferum HOM05D001654 ORTHO05D002773 7.0e-08 62.4 107 41.1
Glyma.12G167700 Glycine max HOM05D001654 ORTHO05D002773 9.1e-08 62.0 107 40.2
unitig_699.g19850 Utricularia gibba HOM05D001654 ORTHO05D002773 1.2e-07 61.6 107 40.2
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 1.6e-07 61.2 122 41.0
PSO170G2651 Papaver somniferum HOM05D001654 ORTHO05D002773 1.6e-07 61.2 107 40.2
Sed0014348 Sechium edule HOM05D001654 ORTHO05D002773 1.6e-07 61.2 113 39.8
BcaB08g35376 Brassica carinata HOM05D001654 ORTHO05D002773 2.0e-07 60.8 113 38.9
Aa31LG3G6750 Aethionema arabicum HOM05D001654 ORTHO05D002773 2.7e-07 60.5 107 39.3
Carub.0008s0982 Capsella rubella HOM05D001654 ORTHO05D002773 2.7e-07 60.5 107 43.0
BcaB01g02931 Brassica carinata HOM05D001654 ORTHO05D002773 3.5e-07 60.1 107 39.3
BcaC01g04843 Brassica carinata HOM05D001654 ORTHO05D002773 3.5e-07 60.1 107 39.3
Nitab4.5_0000948g0080 Nicotiana tabacum HOM05D001654 ORTHO05D002773 3.5e-07 60.1 108 41.7
Oeu045933.1 Olea europaea HOM05D001654 ORTHO05D002773 3.5e-07 60.1 104 41.3
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 3.5e-07 60.1 130 40.8
A03p27570 Brassica napus HOM05D001654 ORTHO05D002773 4.5e-07 59.7 107 39.3
BraA03t11970Z Brassica rapa HOM05D001654 ORTHO05D002773 4.5e-07 59.7 107 39.3
CARHR258780 Cardamine hirsuta HOM05D001654 ORTHO05D002773 5.9e-07 59.3 107 39.3
BcaC04g20838 Brassica carinata HOM05D001654 ORTHO05D002773 7.7e-07 58.9 110 39.1
A10p08660 Brassica napus HOM05D001654 ORTHO05D002773 7.7e-07 58.9 110 39.1
C03p33280 Brassica napus HOM05D001654 ORTHO05D002773 7.7e-07 58.9 106 39.6
C09p38620 Brassica napus HOM05D001654 ORTHO05D002773 7.7e-07 58.9 110 39.1
BolC3t15650H Brassica oleracea HOM05D001654 ORTHO05D002773 7.7e-07 58.9 106 39.6
BolC9t56717H Brassica oleracea HOM05D001654 ORTHO05D002773 7.7e-07 58.9 110 39.1
BraSC37t46137Z Brassica rapa HOM05D001654 ORTHO05D002773 7.7e-07 58.9 110 39.1
Medtr2g005900 Medicago truncatula HOM05D001654 ORTHO05D002773 7.7e-07 58.9 103 39.8
Nitab4.5_0002550g0010 Nicotiana tabacum HOM05D001654 ORTHO05D002773 7.7e-07 58.9 111 36.9
Nitab4.5_0002596g0070 Nicotiana tabacum HOM05D001654 ORTHO05D002773 7.7e-07 58.9 108 41.7
MSTRG.5213 Avicennia marina HOM05D001654 ORTHO05D002773 1.0e-06 58.5 103 38.8
HPP92_019385 Vanilla planifolia HOM05D001654 ORTHO05D002773 1.3e-06 58.2 109 35.8
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 1.7e-06 57.8 117 41.9
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 2.9e-06 57.0 128 39.1
EL10Ac5g11549 Beta vulgaris HOM05D001654 ORTHO05D002773 3.8e-06 56.6 103 39.8
CAN.G798.52 Capsicum annuum HOM05D001654 ORTHO05D002773 3.8e-06 56.6 113 39.8
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 5.0e-06 56.2 178 34.3
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 5.0e-06 56.2 117 42.7
EL10Ac4g08741 Beta vulgaris HOM05D001654 ORTHO05D002773 6.5e-06 55.8 105 39.0
Migut.N00825 Erythranthe guttata HOM05D001654 ORTHO05D002773 8.5e-06 55.5 139 33.8


User provided reference genes

Program Settings