Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.1e-306 1055.8 534 100.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 1.5e-247 859.4 504 86.7
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.4e-240 836.3 517 83.8
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 3.8e-235 818.1 504 81.7
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 1.4e-224 783.1 505 78.4
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 9.7e-223 776.9 517 76.8
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 2.8e-222 775.4 504 78.2
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 1.1e-221 773.5 504 77.2
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.4e-221 773.1 518 75.7
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.8e-221 772.7 517 75.6
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.8e-221 772.7 517 75.6
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 4.1e-221 771.5 505 77.6
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 5.3e-221 771.2 504 76.4
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.7e-219 766.1 517 75.6
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 1.7e-219 766.1 507 75.9
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 1.1e-218 763.5 505 75.6
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 1.5e-218 763.1 504 76.6
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.9e-218 762.7 504 76.4
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 2.5e-218 762.3 518 75.3
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 3.2e-218 761.9 517 75.8
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 4.0e-216 755.0 502 75.1
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 6.8e-216 754.2 507 76.7
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 2.6e-215 752.3 517 73.7
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 2.2e-214 749.2 517 74.7
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 2.8e-214 748.8 507 75.5
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 1.1e-213 746.9 508 76.0
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.4e-213 746.5 504 75.0
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.4e-213 745.7 504 74.8
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.2e-212 743.4 504 75.0
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 1.2e-212 743.4 517 73.3
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 2.0e-212 742.7 504 75.6
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.7e-212 742.3 504 73.6
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 4.5e-212 741.5 507 73.6
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 7.7e-212 740.7 504 74.6
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 1.0e-211 740.3 497 74.0
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 1.3e-211 740.0 526 71.5
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 1.7e-211 739.6 504 75.0
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 3.8e-211 738.4 504 75.0
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 5.0e-211 738.0 510 72.9
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 6.5e-211 737.6 506 73.1
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 2.5e-210 735.7 547 69.1
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 3.3e-210 735.3 506 73.3
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 5.5e-210 734.6 504 74.2
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 2.8e-209 732.3 516 71.5
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 2.8e-209 732.3 517 72.5
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 1.4e-208 729.9 557 67.9
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 1.8e-208 729.6 544 69.3
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 3.0e-208 728.8 506 71.7
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 4.0e-208 728.4 506 71.5
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 2.0e-207 726.1 505 72.3
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 3.4e-207 725.3 520 72.3
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 2.8e-206 722.2 519 70.7
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 3.1e-205 718.8 523 68.6
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 9.2e-205 717.2 517 70.6
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 1.6e-204 716.5 504 71.0
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 8.6e-203 710.7 476 76.9
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.9e-202 709.5 505 69.3
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 7.3e-202 707.6 508 71.7
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 5.2e-200 701.4 520 70.2
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 8.9e-200 700.7 505 69.1
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.9e-198 694.9 515 70.3
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.2e-196 690.3 504 68.8
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 2.7e-196 689.1 505 68.3
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 3.5e-196 688.7 505 69.3
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 5.0e-195 684.9 504 67.7
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 5.6e-194 681.4 528 65.5
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 2.8e-193 679.1 458 75.3
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 3.6e-193 678.7 504 68.7
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.0e-192 675.2 501 68.5
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 4.1e-189 665.2 504 69.4
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 3.3e-186 655.6 503 66.8
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.2e-185 653.7 507 67.3
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 3.6e-185 652.1 508 66.3
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 8.1e-185 651.0 504 66.7
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.4e-184 650.2 504 66.7
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 4.0e-184 648.7 520 63.5
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.5e-183 646.7 507 66.9
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 2.0e-183 646.4 506 66.4
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 5.8e-183 644.8 506 66.2
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 5.8e-183 644.8 503 66.4
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 9.9e-183 644.0 503 65.4
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.3e-182 643.7 516 65.3
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.3e-182 643.7 504 66.5
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 1.7e-182 643.3 506 66.0
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 3.7e-182 642.1 516 65.1
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.7e-182 642.1 431 75.6
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 2.4e-181 639.4 504 66.3
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 9.2e-181 637.5 507 65.5
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 2.7e-180 636.0 525 64.2
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 4.6e-180 635.2 508 66.1
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 1.0e-179 634.0 525 63.0
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.3e-179 633.6 517 64.0
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 1.9e-178 629.8 526 63.5
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 1.2e-177 627.1 518 63.1
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 2.0e-175 619.8 503 64.0
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 9.9e-175 617.5 518 63.5
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 2.9e-174 615.9 517 63.4
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 1.9e-173 613.2 518 63.1
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 2.4e-173 612.8 518 63.5
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 2.4e-173 612.8 504 64.7
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 1.0e-171 607.4 504 61.7
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.7e-171 606.7 504 64.5
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.6e-169 600.1 442 69.9
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 3.1e-168 595.9 504 62.9
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 1.7e-166 590.1 504 59.7
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 1.2e-164 583.9 507 59.0
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 2.6e-159 566.2 494 60.5
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.7e-158 563.5 442 66.1
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 3.8e-158 562.4 449 65.3
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 2.5e-146 523.1 355 74.9
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 3.1e-128 463.0 392 61.5
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 1.3e-126 457.6 442 57.2
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 7.9e-124 448.4 388 58.5
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 4.4e-122 442.6 509 46.8
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 3.7e-121 439.5 519 47.0
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 1.7e-113 414.1 492 43.5
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 7.5e-106 388.7 470 48.7
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 5.0e-102 375.9 467 44.3
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 6.0e-63 246.1 439 40.5
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 6.4e-57 226.1 129 86.8
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 6.0e-47 193.0 123 75.6
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.6e-36 158.3 137 64.2
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 1.3e-30 138.7 271 36.2
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 5.5e-24 116.7 89 66.3
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 5.5e-24 116.7 73 75.3
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 9.3e-24 115.9 76 73.7
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.9e-22 110.5 69 75.4
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 3.7e-20 104.0 103 58.3
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 1.1e-19 102.4 80 61.2
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-18 99.0 133 40.6
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 6.1e-15 86.7 265 26.4
Actinidia18430 Actinidia chinensis HOM05D020173 ORTHO05D007020 2.0e-13 81.6 60 66.7
Actinidia18436 Actinidia chinensis HOM05D005650 ORTHO05D007020 2.2e-12 78.2 56 67.9
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-10 72.0 53 56.6
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 2.1e-07 61.6 46 69.6
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 8.8e-06 56.2 117 36.8


User provided reference genes

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