Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0077300 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.3e-260 901.7 467 100.0
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.9e-63 245.4 338 46.7
RhsimUnG0052900 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.4e-46 189.9 307 43.6
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.4e-45 186.0 311 40.5
Rhsim11G0186100 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.7e-42 175.6 290 42.8
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.2e-40 169.5 316 39.6
RhsimUnG0085900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.8e-39 167.9 309 40.5
Rhsim05G0007500 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.0e-39 166.8 267 44.2
Rhsim09G0015100 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.8e-32 143.3 298 38.6
Rhsim10G0184600 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.4e-30 137.1 274 38.0
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.0e-29 135.6 348 33.3
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.1e-27 127.9 348 32.5
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-25 121.7 326 32.8
Rhsim07G0051900 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.3e-25 120.2 185 43.8
Rhsim02G0044900 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.7e-25 119.8 139 54.0
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.1e-23 115.5 348 31.9
Rhsim01G0124400 Rhododendron simsii HOM05D003061 ORTHO05D003427 5.3e-23 113.2 57 96.5
RhsimUnG0075300 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.3e-23 113.2 94 64.9
Rhsim09G0039900 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.6e-22 110.9 315 33.0
RhsimUnG0177800 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.2e-20 103.6 154 42.2
Rhsim04G0035700 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-19 101.7 154 42.2
CSS0050048 Camellia sinensis var. sinensis HOM05D003061 ORTHO05D003427 6.7e-18 96.3 68 75.0
vmacro21146 Vaccinium macrocarpon HOM05D003061 ORTHO05D003427 1.9e-17 94.7 58 79.3
Rhsim08G0178600 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-16 91.7 106 55.7
Rhsim08G0017800 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.4e-15 88.6 157 38.9
Rhsim01G0095600 Rhododendron simsii HOM05D000121 ORTHO05D000102 3.1e-15 87.4 205 37.6
RhsimUnG0053300 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.1e-15 87.0 76 60.5
DCAR_013218 Daucus carota HOM05D003061 ORTHO05D003427 3.8e-13 80.5 53 75.5
ATR1134G015 Amborella trichopoda HOM05D003061 ORTHO05D003427 5.0e-13 80.1 54 74.1
HanXRQChr10g0287421 Helianthus annuus HOM05D003061 ORTHO05D003427 5.0e-13 80.1 53 71.7
HanXRQChr13g0405101 Helianthus annuus HOM05D003061 ORTHO05D003427 6.5e-13 79.7 53 71.7
Hma1.2p1_0324F.1_g125730 Hydrangea macrophylla HOM05D003061 ORTHO05D003427 6.5e-13 79.7 54 74.1
Rhsim08G0091100 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.5e-13 79.7 52 82.7
CSS0027702 Camellia sinensis var. sinensis HOM05D003061 ORTHO05D003427 8.5e-13 79.3 54 74.1
DCAR_028413 Daucus carota HOM05D003061 ORTHO05D003427 8.5e-13 79.3 53 73.6
TAR365G1220 Trochodendron aralioides HOM05D003061 ORTHO05D003427 8.5e-13 79.3 54 74.1
Zm00001eb210850 Zea mays HOM05D003061 ORTHO05D003427 1.4e-12 78.6 54 66.7
ECA247G1891 Erigeron canadensis HOM05D003061 ORTHO05D003427 3.2e-12 77.4 53 69.8
Lsat_1_v5_gn_9_38740 Lactuca sativa HOM05D003061 ORTHO05D003427 3.2e-12 77.4 53 69.8
Rhsim07G0053500 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.2e-12 77.4 110 46.4
PSO017G2126 Papaver somniferum HOM05D003061 ORTHO05D003427 4.2e-12 77.0 54 70.4
PSO170G4069 Papaver somniferum HOM05D003061 ORTHO05D003427 4.2e-12 77.0 54 70.4
Actinidia11447 Actinidia chinensis HOM05D003061 ORTHO05D003427 9.4e-12 75.9 59 62.7
ECA232G2506 Erigeron canadensis HOM05D003061 ORTHO05D003427 9.4e-12 75.9 53 67.9
GSVIVG01038099001 Vitis vinifera HOM05D003061 ORTHO05D003427 1.2e-11 75.5 54 66.7
Dinv44171 Davidia involucrata HOM05D003061 ORTHO05D003427 1.6e-11 75.1 54 68.5
Rhsim02G0131300 Rhododendron simsii HOM05D029833 ORTHO05D009356 2.1e-11 74.7 97 44.3
Lj2C295G3 Lonicera japonica HOM05D000113 ORTHO05D001798 2.7e-11 74.3 53 66.0
CDE08G0304 Ceratophyllum demersum HOM05D003061 ORTHO05D003427 3.6e-11 73.9 54 68.5
Duzib213G0322 Durio zibethinus HOM05D003061 ORTHO05D003427 3.6e-11 73.9 53 67.9
Gohir.A04G051100 Gossypium hirsutum HOM05D003061 ORTHO05D003427 3.6e-11 73.9 53 67.9
Os03g0845700 Oryza sativa ssp. japonica HOM05D003061 ORTHO05D003427 4.6e-11 73.6 54 66.7
Gohir.1Z049425 Gossypium hirsutum HOM05D003061 ORTHO05D003427 6.1e-11 73.2 52 69.2
Gohir.A01G039000 Gossypium hirsutum HOM05D003061 ORTHO05D003427 6.1e-11 73.2 52 69.2
Gohir.D01G026700 Gossypium hirsutum HOM05D003061 ORTHO05D003427 6.1e-11 73.2 52 69.2
Lj6A129G20 Lonicera japonica HOM05D003061 ORTHO05D003427 6.1e-11 73.2 56 62.5
Gohir.D05G330000 Gossypium hirsutum HOM05D003061 ORTHO05D003427 7.9e-11 72.8 53 66.0
Gorai.009G353600 Gossypium raimondii HOM05D003061 ORTHO05D003427 7.9e-11 72.8 53 66.0
Nn1g09671 Nelumbo nucifera HOM05D003061 ORTHO05D003427 7.9e-11 72.8 54 68.5
Duzib187G1782 Durio zibethinus HOM05D003061 ORTHO05D003427 1.0e-10 72.4 53 66.0
Thecc.07G152900 Theobroma cacao HOM05D003061 ORTHO05D003427 1.0e-10 72.4 53 66.0
Gorai.002G036100 Gossypium raimondii HOM05D003061 ORTHO05D003427 1.4e-10 72.0 52 67.3
Peaxi162Scf00001g00572 Petunia axillaris HOM05D003061 ORTHO05D003427 1.4e-10 72.0 54 68.5
Solyc03g031690.3 Solanum lycopersicum HOM05D003061 ORTHO05D003427 1.4e-10 72.0 54 68.5
Sopen03g005560 Solanum pennellii HOM05D003061 ORTHO05D003427 1.4e-10 72.0 54 68.5
Oeu034173.1 Olea europaea HOM05D003061 ORTHO05D003427 1.8e-10 71.6 52 67.3
PGSC0003DMG400005079 Solanum tuberosum HOM05D003061 ORTHO05D003427 1.8e-10 71.6 54 66.7
Manes.11G127900 Manihot esculenta HOM05D003061 ORTHO05D003427 2.3e-10 71.2 54 66.7
Os06g0697400 Oryza sativa ssp. japonica HOM05D003061 ORTHO05D003427 2.3e-10 71.2 54 63.0
Potri.013G120500 Populus trichocarpa HOM05D003061 ORTHO05D003427 2.3e-10 71.2 54 64.8
AL1G62980 Arabidopsis lyrata HOM05D003061 ORTHO05D003427 3.0e-10 70.9 53 62.3
AT1G54250 Arabidopsis thaliana HOM05D003061 ORTHO05D003427 3.0e-10 70.9 53 62.3
Cc07_g14770 Coffea canephora HOM05D003061 ORTHO05D003427 3.0e-10 70.9 54 64.8
Thhalv10029046m.g Eutrema salsugineum HOM05D003061 ORTHO05D003427 3.0e-10 70.9 53 62.3
Manes.04G038000 Manihot esculenta HOM05D003061 ORTHO05D003427 3.0e-10 70.9 54 66.7
vmacro23283 Vaccinium macrocarpon HOM05D000163 ORTHO05D009356 3.0e-10 70.9 181 30.9
Atru.chr10.967 Acer truncatum HOM05D003061 ORTHO05D003427 3.9e-10 70.5 53 62.3
AL5G41530 Arabidopsis lyrata HOM05D003061 ORTHO05D003427 3.9e-10 70.5 53 62.3
AT3G59600 Arabidopsis thaliana HOM05D003061 ORTHO05D003427 3.9e-10 70.5 53 62.3
Carub.0001s4349 Capsella rubella HOM05D003061 ORTHO05D003427 3.9e-10 70.5 53 60.4
Carub.0005s2632 Capsella rubella HOM05D003061 ORTHO05D003427 3.9e-10 70.5 53 62.3
TWI63G1505 Tripterygium wilfordii HOM05D003061 ORTHO05D003427 3.9e-10 70.5 54 64.8
Aa31LG10G13920 Aethionema arabicum HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 62.3
Aa31sc143G50 Aethionema arabicum HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 62.3
BcaC07g40492 Brassica carinata HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 62.3
A09p51870 Brassica napus HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 62.3
C08p34610 Brassica napus HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 62.3
BolC8t51063H Brassica oleracea HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 62.3
BraA09t40623Z Brassica rapa HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 62.3
CARHR044620 Cardamine hirsuta HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 60.4
Sp1g40680 Schrenkiella parvula HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 62.3
Sp5g03560 Schrenkiella parvula HOM05D003061 ORTHO05D003427 5.1e-10 70.1 53 62.3
BcaC07g40469 Brassica carinata HOM05D003061 ORTHO05D003427 6.7e-10 69.7 53 60.4
Thhalv10006298m.g Eutrema salsugineum HOM05D003061 ORTHO05D003427 6.7e-10 69.7 53 60.4
Nitab4.5_0000210g0140 Nicotiana tabacum HOM05D003061 ORTHO05D003427 6.7e-10 69.7 55 61.8
Aqoxy5G00553 Aquilegia oxysepala HOM05D003061 ORTHO05D003427 8.8e-10 69.3 53 66.0
Nitab4.5_0000250g0230 Nicotiana tabacum HOM05D003061 ORTHO05D003427 8.8e-10 69.3 54 64.8
Nitab4.5_0001403g0030 Nicotiana tabacum HOM05D003061 ORTHO05D003427 8.8e-10 69.3 54 64.8
Rhsim02G0102300 Rhododendron simsii HOM05D000030 ORTHO05D000031 8.8e-10 69.3 270 28.5
MSTRG.14899 Avicennia marina HOM05D003061 ORTHO05D003427 1.1e-09 68.9 53 64.2
CAN.G404.51 Capsicum annuum HOM05D003061 ORTHO05D003427 1.1e-09 68.9 54 64.8
Eucgr.L01795 Eucalyptus grandis HOM05D003061 ORTHO05D003427 1.5e-09 68.6 70 54.3
Prupe.4G249600 Prunus persica HOM05D003061 ORTHO05D003427 1.5e-09 68.6 54 57.4
RcHm_v2.0_Chr5g0052071 Rosa chinensis HOM05D003061 ORTHO05D003427 1.5e-09 68.6 53 60.4
Sed0020025 Sechium edule HOM05D003061 ORTHO05D003427 1.5e-09 68.6 54 61.1
SGA_v2.0_scaffold37G14643 Striga asiatica HOM05D003061 ORTHO05D003427 1.5e-09 68.6 53 64.2
MD03G1174900 Malus domestica HOM05D003061 ORTHO05D003427 2.0e-09 68.2 54 55.6
MD11G1193000 Malus domestica HOM05D003061 ORTHO05D003427 2.0e-09 68.2 54 55.6
Ciclev10022723m.g Citrus clementina HOM05D003061 ORTHO05D003427 2.5e-09 67.8 53 62.3
Migut.I00625 Erythranthe guttata HOM05D003061 ORTHO05D003427 2.5e-09 67.8 52 65.4
PGR014G0006 Punica granatum HOM05D003061 ORTHO05D003427 2.5e-09 67.8 56 57.1
PGR083G0444 Punica granatum HOM05D003061 ORTHO05D003427 2.5e-09 67.8 56 57.1
Rhsim08G0158700 Rhododendron simsii HOM05D008219 ORTHO05D340272 2.5e-09 67.8 173 32.9
THA.LOC104799640 Tarenaya hassleriana HOM05D003061 ORTHO05D003427 2.5e-09 67.8 53 60.4
Cpa.g.sc9.338 Carica papaya HOM05D003061 ORTHO05D003427 3.3e-09 67.4 53 64.2
FvH4_7g05580 Fragaria vesca HOM05D003061 ORTHO05D003427 4.3e-09 67.0 58 53.4
THA.LOC104803962 Tarenaya hassleriana HOM05D003061 ORTHO05D003427 4.3e-09 67.0 52 61.5
RcHm_v2.0_Chr1g0332731 Rosa chinensis HOM05D003061 ORTHO05D003427 5.7e-09 66.6 53 56.6
RcHm_v2.0_Chr6g0273601 Rosa chinensis HOM05D003061 ORTHO05D003427 5.7e-09 66.6 53 56.6
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 5.7e-09 66.6 356 23.9
Glyma.02G168300 Glycine max HOM05D003061 ORTHO05D003427 7.4e-09 66.2 54 59.3
CDE06G1076 Ceratophyllum demersum HOM05D003061 ORTHO05D003427 9.7e-09 65.9 40 72.5
FAN01G1955 Fragaria x ananassa HOM05D003061 ORTHO05D003427 1.3e-08 65.5 54 55.6
FAN03G2895 Fragaria x ananassa HOM05D003061 ORTHO05D003427 1.3e-08 65.5 53 56.6
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.3e-08 65.5 53 56.6
FAN23G1129 Fragaria x ananassa HOM05D003061 ORTHO05D003427 1.3e-08 65.5 53 56.6
FAN23G2416 Fragaria x ananassa HOM05D003061 ORTHO05D003427 1.3e-08 65.5 53 56.6
Phvul.007G263200 Phaseolus vulgaris HOM05D003061 ORTHO05D003427 1.3e-08 65.5 54 57.4
SEGI_19745 Sequoiadendron giganteum HOM05D003061 ORTHO05D003427 1.3e-08 65.5 53 62.3
VMungo0720G2551 Vigna mungo HOM05D003061 ORTHO05D003427 1.3e-08 65.5 54 57.4
Eucgr.A00023 Eucalyptus grandis HOM05D003061 ORTHO05D003427 1.7e-08 65.1 53 60.4
Sabra13G0101800 Salix brachista HOM05D003061 ORTHO05D003427 2.2e-08 64.7 39 71.8
CsaV3_4G002660 Cucumis sativus L. HOM05D003061 ORTHO05D003427 2.8e-08 64.3 54 59.3
Glyma.09G103700 Glycine max HOM05D003061 ORTHO05D003427 2.8e-08 64.3 54 55.6
Rhsim05G0113800 Rhododendron simsii HOM05D010265 ORTHO05D009356 3.7e-08 63.9 332 25.0
CANSAT56G2539 Cannabis sativa HOM05D003061 ORTHO05D003427 4.8e-08 63.5 53 58.5
Ca_09160_v3 Cicer arietinum L. HOM05D003061 ORTHO05D003427 4.8e-08 63.5 52 57.7
Ca_30293_v3 Cicer arietinum L. HOM05D003061 ORTHO05D003427 4.8e-08 63.5 52 57.7
GSVIVG01038101001 Vitis vinifera HOM05D003061 ORTHO05D003427 4.8e-08 63.5 54 61.1
arahy.Tifrunner.gnm1.ann1.8X2FSE Arachis hypogaea HOM05D003061 ORTHO05D003427 8.2e-08 62.8 52 55.8
unitig_22.g5666 Utricularia gibba HOM05D003061 ORTHO05D003427 8.2e-08 62.8 53 54.7
Rhsim06G0241200 Rhododendron simsii HOM05D010265 ORTHO05D009356 1.4e-07 62.0 106 37.7
arahy.Tifrunner.gnm1.ann1.7FZ0TQ Arachis hypogaea HOM05D003061 ORTHO05D003427 1.8e-07 61.6 54 53.7
arahy.Tifrunner.gnm1.ann1.F6URWD Arachis hypogaea HOM05D003061 ORTHO05D003427 1.8e-07 61.6 54 53.7
arahy.Tifrunner.gnm1.ann1.P1WWXN Arachis hypogaea HOM05D003061 ORTHO05D003427 1.8e-07 61.6 54 53.7
Rhsim07G0045700 Rhododendron simsii HOM05D003061 ORTHO05D003427 1.8e-07 61.6 57 52.6
Medtr1g056890 Medicago truncatula HOM05D003061 ORTHO05D003427 2.4e-07 61.2 52 53.8
Rhsim08G0205100 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.4e-07 61.2 111 38.7
Lalb_Chr02g0153901 Lupinus albus HOM05D003061 ORTHO05D003427 3.1e-07 60.8 54 53.7
TPR.G2792 Trifolium pratense HOM05D003061 ORTHO05D003427 3.1e-07 60.8 52 53.8
Aa31LG1G25300 Aethionema arabicum HOM05D003061 ORTHO05D003427 4.1e-07 60.5 49 59.2
Rhsim05G0212200 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.1e-07 60.5 78 43.6
Actinidia04257 Actinidia chinensis HOM05D003061 ORTHO05D003427 5.3e-07 60.1 68 47.1
Rhsim04G0148100 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.3e-07 60.1 45 64.4
arahy.Tifrunner.gnm1.ann1.Q2EMXV Arachis hypogaea HOM05D003061 ORTHO05D003427 6.9e-07 59.7 52 53.8
Lj5g0006202 Lotus japonicus HOM05D003061 ORTHO05D003427 6.9e-07 59.7 52 53.8
Lj5g0017482 Lotus japonicus HOM05D003061 ORTHO05D003427 6.9e-07 59.7 52 53.8
Nitab4.5_0009322g0010 Nicotiana tabacum HOM05D003061 ORTHO05D003427 6.9e-07 59.7 40 67.5
vmacro00246 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 6.9e-07 59.7 170 30.0
Rhsim11G0006600 Rhododendron simsii HOM05D008219 ORTHO05D018100 9.1e-07 59.3 78 42.3
HPP92_012795 Vanilla planifolia HOM05D003061 ORTHO05D003427 9.1e-07 59.3 35 74.3
Dinv43978 Davidia involucrata HOM05D003061 ORTHO05D003427 1.2e-06 58.9 54 55.6
TWI38G1137 Tripterygium wilfordii HOM05D003061 ORTHO05D003427 1.5e-06 58.5 54 53.7
vmacro13583 Vaccinium macrocarpon HOM05D003061 ORTHO05D003427 1.5e-06 58.5 54 53.7
Dinv09469 Davidia involucrata HOM05D003061 ORTHO05D003427 2.6e-06 57.8 54 57.4
Rhsim05G0208300 Rhododendron simsii HOM05D010265 ORTHO05D009356 2.6e-06 57.8 84 41.7
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.6e-06 57.8 135 34.1
EL10Ac4g10363 Beta vulgaris HOM05D003061 ORTHO05D003427 5.9e-06 56.6 54 50.0
Haze_01408 Corylus avellana HOM05D003061 ORTHO05D003427 7.7e-06 56.2 54 59.3
Hma1.2p1_1582F.1_g291980 Hydrangea macrophylla HOM05D003061 ORTHO05D003427 7.7e-06 56.2 54 51.9
Pp3c2_14410 Physcomitrium patens HOM05D003061 ORTHO05D003427 7.7e-06 56.2 54 57.4
SMO163G0085 Selaginella moellendorffii HOM05D003061 ORTHO05D003427 7.7e-06 56.2 56 57.1


User provided reference genes

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