Gene: AT3G59600

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G59600
  • Transcript Identifier AT3G59600.1
  • Gene Type Coding gene
  • Location Chr3 : 22016629-22017923 : positive

Gene Family Information

  • ID HOM05D003061
  • #Genes/#Species 224/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G59600.1
  • symbol NRPB8B
  • uniprot Q9M1A8

Descriptions

  • Description RNA polymerase Rpb8
  • Computational description NRPB8B; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase, Rpb8 (InterPro:IPR005570); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb8 (TAIR:AT1G54250.1); Has 513 Blast hits to 511 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 205; Plants - 84; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
Gene Ontologytranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0000418
IDA
Gene OntologyRNA polymerase IV complex1
GO:0000419
IDA
Gene OntologyRNA polymerase V complex1
GO:0005665
IDA, IPI
IBA
Gene OntologyRNA polymerase II, core complex1 2
GO:0005736
IBA
Gene OntologyRNA polymerase I complex2
GO:0005666
IBA
Gene OntologyRNA polymerase III complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005570 RNA polymerase, Rpb8
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
15.1.6.6 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 8