Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0252400 Rhododendron simsii HOM05D000912 ORTHO05D008392 1.4e-197 693.0 397 100.0
Rhsim08G0252600 Rhododendron simsii HOM05D000912 ORTHO05D008392 1.4e-197 693.0 397 100.0
vmacro18721 Vaccinium macrocarpon HOM05D000912 ORTHO05D008392 4.1e-149 531.9 394 81.7
Actinidia21901 Actinidia chinensis HOM05D000912 ORTHO05D008392 1.6e-137 493.4 368 81.8
Dinv37770 Davidia involucrata HOM05D000912 ORTHO05D008392 7.4e-127 458.0 259 90.7
GSVIVG01029443001 Vitis vinifera HOM05D000912 ORTHO05D008392 6.3e-126 454.9 257 88.3
Lj9A544G34 Lonicera japonica HOM05D000912 ORTHO05D008392 8.2e-126 454.5 255 89.4
Hma1.2p1_0073F.1_g038580 Hydrangea macrophylla HOM05D000912 ORTHO05D008392 1.0e-123 447.6 259 86.1
Oeu007970.1 Olea europaea HOM05D000912 ORTHO05D008392 3.8e-123 445.7 255 88.2
CSS0011648 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D008392 1.6e-121 440.3 357 77.3
CSS0042059 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D008392 4.7e-121 438.7 357 77.0
HanXRQChr09g0277451 Helianthus annuus HOM05D000912 ORTHO05D008392 4.7e-121 438.7 259 85.3
Lsat_1_v5_gn_4_106121 Lactuca sativa HOM05D000912 ORTHO05D008392 6.1e-121 438.3 259 85.3
CAN.G68.13 Capsicum annuum HOM05D000912 ORTHO05D008392 1.0e-120 437.6 255 85.5
Sopen08g006330 Solanum pennellii HOM05D000912 ORTHO05D008392 1.8e-120 436.8 255 85.5
PGSC0003DMG400007658 Solanum tuberosum HOM05D000912 ORTHO05D008392 1.8e-120 436.8 255 85.5
SGA_v2.0_scaffold14G07132 Striga asiatica HOM05D000912 ORTHO05D008392 3.0e-120 436.0 261 83.5
Cc11_g00030 Coffea canephora HOM05D000912 ORTHO05D008392 5.2e-120 435.3 257 84.4
Sabra14G0003000 Salix brachista HOM05D000912 ORTHO05D008392 6.8e-120 434.9 258 84.9
Potri.014G000400 Populus trichocarpa HOM05D000912 ORTHO05D008392 1.5e-119 433.7 258 84.9
Ciclev10028057m.g Citrus clementina HOM05D000912 ORTHO05D008392 3.4e-119 432.6 258 84.9
Nitab4.5_0000348g0140 Nicotiana tabacum HOM05D000912 ORTHO05D008392 4.4e-119 432.2 255 84.7
Peaxi162Scf01205g00156 Petunia axillaris HOM05D000912 ORTHO05D008392 1.3e-118 430.6 255 84.7
SalBow5G0605 Salvia bowleyana HOM05D000912 ORTHO05D008392 3.7e-118 429.1 256 83.6
SalBow5G2613 Salvia bowleyana HOM05D000912 ORTHO05D008392 4.8e-118 428.7 256 83.6
ECA229G0002 Erigeron canadensis HOM05D000912 ORTHO05D008392 8.3e-118 427.9 255 84.7
ECA232G1388 Erigeron canadensis HOM05D000912 ORTHO05D008392 8.3e-118 427.9 255 84.7
ECA233G4728 Erigeron canadensis HOM05D000912 ORTHO05D008392 8.3e-118 427.9 255 84.7
Duzib235G1169 Durio zibethinus HOM05D000912 ORTHO05D008392 1.1e-117 427.6 258 82.9
Cfa002159 Carpinus fangiana HOM05D000912 ORTHO05D008392 1.4e-117 427.2 258 82.6
Gohir.D05G117700 Gossypium hirsutum HOM05D000912 ORTHO05D008392 1.4e-117 427.2 256 84.0
Gorai.009G121600 Gossypium raimondii HOM05D000912 ORTHO05D008392 1.4e-117 427.2 256 84.0
arahy.Tifrunner.gnm1.ann1.1L678P Arachis hypogaea HOM05D000912 ORTHO05D008392 3.1e-117 426.0 256 82.8
arahy.Tifrunner.gnm1.ann1.400PFG Arachis hypogaea HOM05D000912 ORTHO05D008392 3.1e-117 426.0 256 82.8
Haze_16247 Corylus avellana HOM05D000912 ORTHO05D008392 3.1e-117 426.0 258 82.2
CiPaw.01G092100 Carya illinoinensis HOM05D000912 ORTHO05D008392 4.1e-117 425.6 256 83.2
Manes.06G180101 Manihot esculenta HOM05D000912 ORTHO05D008392 1.2e-116 424.1 258 82.9
THA.LOC104813622 Tarenaya hassleriana HOM05D000912 ORTHO05D008392 1.6e-116 423.7 265 78.9
MELO3C019564.2 Cucumis melo HOM05D000912 ORTHO05D008392 2.0e-116 423.3 263 81.7
Nn8g41283 Nelumbo nucifera HOM05D000912 ORTHO05D008392 2.0e-116 423.3 256 82.8
Thecc.06G049200 Theobroma cacao HOM05D000912 ORTHO05D008392 2.0e-116 423.3 256 83.2
TAR626G1580 Trochodendron aralioides HOM05D000912 ORTHO05D008392 2.0e-116 423.3 259 82.2
Nitab4.5_0001070g0120 Nicotiana tabacum HOM05D000912 ORTHO05D008392 2.7e-116 422.9 267 80.9
Potri.007G003500 Populus trichocarpa HOM05D000912 ORTHO05D008392 2.7e-116 422.9 258 82.6
Atru.chr3.4083 Acer truncatum HOM05D000912 ORTHO05D001086 4.5e-116 422.2 258 82.6
Gohir.A05G116800 Gossypium hirsutum HOM05D000912 ORTHO05D008392 5.9e-116 421.8 256 83.2
QL05p085123 Quercus lobata HOM05D000912 ORTHO05D008392 5.9e-116 421.8 256 82.8
Glyma.07G000500 Glycine max HOM05D000912 ORTHO05D008392 1.0e-115 421.0 258 81.8
MSTRG.16592 Avicennia marina HOM05D000912 ORTHO05D008392 1.3e-115 420.6 256 82.0
CsaV3_3G018030 Cucumis sativus L. HOM05D000912 ORTHO05D008392 1.3e-115 420.6 263 81.0
VMungo0331G0828 Vigna mungo HOM05D000912 ORTHO05D008392 2.2e-115 419.9 258 81.4
Sed0004063 Sechium edule HOM05D000912 ORTHO05D008392 2.9e-115 419.5 259 83.0
TPR.G38709 Trifolium pratense HOM05D000912 ORTHO05D008392 8.5e-115 417.9 256 80.5
Phvul.010G165800 Phaseolus vulgaris HOM05D000912 ORTHO05D008392 1.9e-114 416.8 258 80.2
Glyma.08G226600 Glycine max HOM05D000912 ORTHO05D008392 4.2e-114 415.6 258 80.2
Aqoxy7G02558 Aquilegia oxysepala HOM05D000912 ORTHO05D008392 7.2e-114 414.8 256 80.9
unitig_26.g9061 Utricularia gibba HOM05D000912 ORTHO05D008392 7.2e-114 414.8 257 81.7
Aa31LG7G1180 Aethionema arabicum HOM05D000912 ORTHO05D008392 2.1e-113 413.3 265 77.7
Migut.B00598 Erythranthe guttata HOM05D000912 ORTHO05D008392 2.7e-113 412.9 262 79.4
TWI75G1320 Tripterygium wilfordii HOM05D000912 ORTHO05D008392 4.7e-113 412.1 258 79.5
Medtr4g005070 Medicago truncatula HOM05D000912 ORTHO05D008392 6.1e-113 411.8 258 80.2
CARHR017180 Cardamine hirsuta HOM05D000912 ORTHO05D008392 8.0e-113 411.4 265 77.7
Sp1g14870 Schrenkiella parvula HOM05D000912 ORTHO05D008392 1.4e-112 410.6 265 77.4
AL1G28890 Arabidopsis lyrata HOM05D000912 ORTHO05D008392 1.8e-112 410.2 264 77.7
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 1.8e-112 410.2 257 80.5
BolC5t30214H Brassica oleracea HOM05D000912 ORTHO05D008392 3.0e-112 409.5 265 77.4
Carub.0001s1646 Capsella rubella HOM05D000912 ORTHO05D008392 4.0e-112 409.1 264 77.3
PSO063G4559 Papaver somniferum HOM05D000912 ORTHO05D008392 5.2e-112 408.7 257 77.8
PSO170G5414 Papaver somniferum HOM05D000912 ORTHO05D008392 5.2e-112 408.7 257 77.8
Lj3g0002366 Lotus japonicus HOM05D000912 ORTHO05D008392 6.8e-112 408.3 258 77.9
AT1G16720 Arabidopsis thaliana HOM05D000912 ORTHO05D008392 1.5e-111 407.1 259 78.8
BcaC05g25533 Brassica carinata HOM05D000912 ORTHO05D008392 1.5e-111 407.1 259 78.8
A06p12690 Brassica napus HOM05D000912 ORTHO05D008392 1.5e-111 407.1 265 77.0
C05p14990 Brassica napus HOM05D000912 ORTHO05D008392 1.5e-111 407.1 265 77.0
BraA06t24429Z Brassica rapa HOM05D000912 ORTHO05D008392 1.5e-111 407.1 265 77.0
Lalb_Chr04g0264781 Lupinus albus HOM05D000912 ORTHO05D008392 1.5e-111 407.1 256 78.5
ATR0626G080 Amborella trichopoda HOM05D000912 ORTHO05D008392 2.0e-111 406.8 259 78.0
FAN02G2903 Fragaria x ananassa HOM05D000912 ORTHO05D001232 2.0e-111 406.8 257 79.4
CANSAT01G2443 Cannabis sativa HOM05D000912 ORTHO05D008392 2.6e-111 406.4 258 79.1
RcHm_v2.0_Chr2g0148341 Rosa chinensis HOM05D000912 ORTHO05D008392 2.6e-111 406.4 258 79.1
FAN05G3420 Fragaria x ananassa HOM05D000912 ORTHO05D001232 5.7e-111 405.2 258 78.3
FAN14G0321 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.3e-110 404.1 267 76.4
FAN14G4043 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.3e-110 404.1 267 76.4
MD09G1169900 Malus domestica HOM05D000912 ORTHO05D008392 2.8e-110 402.9 258 77.9
Prupe.3G028100 Prunus persica HOM05D000912 ORTHO05D008392 2.8e-110 402.9 258 77.9
FvH4_6g36340 Fragaria vesca HOM05D000912 ORTHO05D008392 4.8e-110 402.1 258 77.9
FAN09G3798 Fragaria x ananassa HOM05D000912 ORTHO05D001232 4.8e-110 402.1 258 77.9
Psat7g264640 Pisum sativum HOM05D000912 ORTHO05D008392 7.0e-109 398.3 258 77.1
CDE05G1860 Ceratophyllum demersum HOM05D000912 ORTHO05D008392 1.6e-108 397.1 260 75.0
COL.COLO4_26806 Corchorus olitorius HOM05D000912 ORTHO05D008392 1.3e-107 394.0 256 78.9
ClCG05G010460 Citrullus lanatus HOM05D000912 ORTHO05D008392 8.6e-107 391.3 322 65.8
Ca_03787_v3 Cicer arietinum L. HOM05D000912 ORTHO05D008392 7.2e-106 388.3 262 75.2
Hund18549 Selenicereus undatus HOM05D000912 ORTHO05D008392 4.4e-103 379.0 254 74.0
Os02g0137700 Oryza sativa ssp. japonica HOM05D000912 ORTHO05D008392 1.3e-102 377.5 260 72.3
SEGI_09830 Sequoiadendron giganteum HOM05D000912 ORTHO05D008392 2.8e-102 376.3 257 72.0
DCAR_028447 Daucus carota HOM05D000912 ORTHO05D008392 6.3e-102 375.2 257 75.9
EL10Ac7g18104 Beta vulgaris HOM05D000912 ORTHO05D008392 1.1e-101 374.4 256 73.4
AUR62025686 Chenopodium quinoa HOM05D000912 ORTHO05D008392 2.4e-101 373.2 258 74.0
Eucgr.F04061 Eucalyptus grandis HOM05D000912 ORTHO05D008392 1.2e-100 370.9 251 76.5
AUR62001304 Chenopodium quinoa HOM05D000912 ORTHO05D008392 1.6e-100 370.5 258 73.6
MBI16_g40724_MAGBIO Magnolia biondii HOM05D000912 ORTHO05D008392 2.0e-100 370.2 261 72.8
Os06g0704700 Oryza sativa ssp. japonica HOM05D000912 ORTHO05D008392 3.5e-100 369.4 265 70.2
Zm00001eb227320 Zea mays HOM05D000912 ORTHO05D008392 1.7e-99 367.1 264 70.1
HPP92_015272 Vanilla planifolia HOM05D000912 ORTHO05D008392 3.3e-98 362.8 281 66.2
Pp3c25_2890 Physcomitrium patens HOM05D000912 ORTHO05D008392 5.4e-93 345.5 257 63.4
Cpa.g.sc4293.2 Carica papaya HOM05D000912 ORTHO05D008392 4.6e-92 342.4 205 83.9
Pp3c16_11160 Physcomitrium patens HOM05D000912 ORTHO05D008392 2.3e-91 340.1 259 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4434 Anthoceros agrestis HOM05D000912 ORTHO05D008392 1.4e-88 330.9 261 62.5
Thhalv10007626m.g Eutrema salsugineum HOM05D000912 ORTHO05D008392 2.0e-87 327.0 205 78.5
Mapoly0022s0049 Marchantia polymorpha HOM05D000912 ORTHO05D008392 1.9e-85 320.5 279 58.4
CBR_g46441 Chara braunii HOM05D000912 ORTHO05D008392 1.8e-80 303.9 259 59.1
SMO337G0061 Selaginella moellendorffii HOM05D000912 ORTHO05D008392 2.5e-74 283.5 258 55.8
MCO08G214 Micromonas commoda HOM05D000912 ORTHO05D008392 5.8e-39 166.0 261 39.8
MD07G1024000 Malus domestica HOM05D000912 ORTHO05D008392 1.1e-37 161.8 121 68.6
Cre13.g578650 Chlamydomonas reinhardtii HOM05D000912 ORTHO05D008392 2.1e-36 157.5 259 39.4
BcaC05g24902 Brassica carinata HOM05D000912 ORTHO05D008392 3.0e-35 153.7 124 66.9
C05p08430 Brassica napus HOM05D000912 ORTHO05D008392 3.0e-35 153.7 124 66.9
BolC5t29594H Brassica oleracea HOM05D000912 ORTHO05D008392 3.0e-35 153.7 124 66.9
MD07G1024200 Malus domestica HOM05D000912 ORTHO05D008392 3.2e-29 133.7 90 73.3
PRCOL_00001268 Prasinoderma coloniale HOM05D000912 ORTHO05D008392 5.1e-27 126.3 284 32.4
MD07G1017500 Malus domestica HOM05D000912 ORTHO05D008392 1.1e-13 82.0 57 66.7
Cre02.g142146 Chlamydomonas reinhardtii HOM05D006026 ORTHO05D007502 4.1e-08 63.5 130 34.6
Thecc.10G140900 Theobroma cacao HOM05D000912 ORTHO05D008392 7.0e-08 62.8 51 58.8
ATR0661G296 Amborella trichopoda HOM05D006026 ORTHO05D007502 2.9e-06 57.4 135 31.9
AagrBONN_evm.TU.Sc2ySwM_228.3661 Anthoceros agrestis HOM05D006026 ORTHO05D007502 2.9e-06 57.4 92 39.1
Cpa.g.sc20.183 Carica papaya HOM05D006026 ORTHO05D007502 2.9e-06 57.4 121 30.6
Mapoly0013s0111 Marchantia polymorpha HOM05D006026 ORTHO05D007502 2.9e-06 57.4 92 38.0
PRCOL_00003008 Prasinoderma coloniale HOM05D006026 ORTHO05D007502 5.0e-06 56.6 96 38.5
Pp3c27_8140 Physcomitrium patens HOM05D006026 ORTHO05D007502 6.5e-06 56.2 101 35.6
HanXRQChr02g0049421 Helianthus annuus HOM05D006026 ORTHO05D007502 8.5e-06 55.8 126 31.0


User provided reference genes

Program Settings