Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.3e-97 359.8 183 100.0
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.2e-94 349.0 183 96.2
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 4.4e-90 334.7 183 92.3
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 4.1e-88 328.2 183 90.2
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.6e-84 316.2 180 90.6
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 2.8e-84 315.5 179 88.3
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-82 310.1 178 88.2
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.7e-81 305.1 179 87.7
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.4e-80 303.1 178 86.0
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 4.1e-80 301.6 178 84.3
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.5e-79 298.5 178 83.1
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.5e-79 298.5 178 83.1
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 5.9e-79 297.7 178 85.4
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 1.0e-78 297.0 178 85.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.7e-78 296.2 178 82.6
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.3e-78 295.8 178 83.7
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.0e-78 294.7 179 84.9
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.9e-77 292.7 176 83.0
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 4.3e-77 291.6 179 83.2
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.2e-76 290.0 167 85.6
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 2.8e-76 288.9 179 82.1
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.7e-76 288.1 173 83.2
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.7e-76 288.1 178 80.9
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.7e-76 288.1 178 80.9
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 6.1e-76 287.7 179 81.6
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.0e-75 287.0 172 82.6
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.4e-75 286.6 178 82.6
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.4e-75 286.6 175 83.4
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.8e-75 286.2 172 82.0
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.8e-75 286.2 173 82.7
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.8e-75 286.2 173 82.7
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 5.2e-75 284.6 172 82.0
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 8.9e-75 283.9 172 82.0
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 8.9e-75 283.9 180 80.6
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 8.9e-75 283.9 180 81.1
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 8.9e-75 283.9 180 81.1
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.2e-74 283.5 173 82.1
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.2e-74 283.5 176 81.2
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.0e-74 282.7 180 79.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 2.0e-74 282.7 179 81.6
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.6e-74 282.3 180 80.6
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 7.5e-74 280.8 180 80.0
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.7e-73 279.6 180 77.8
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.7e-73 279.6 178 79.2
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.2e-73 279.3 178 77.5
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.2e-73 279.3 179 79.3
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.2e-73 279.3 179 78.8
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 6.4e-73 277.7 181 79.6
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 8.3e-73 277.3 175 77.7
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-72 276.9 178 78.7
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.4e-72 276.6 180 77.8
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.8e-72 276.2 178 79.8
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.2e-72 275.4 178 77.5
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 5.4e-72 274.6 180 81.1
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 9.2e-72 273.9 178 80.3
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.2e-71 273.5 188 75.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.6e-71 273.1 180 76.7
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.0e-71 272.7 175 77.1
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-71 272.3 178 74.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.5e-71 271.9 178 76.4
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 4.6e-71 271.6 175 80.0
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.0e-71 271.2 178 76.4
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 6.0e-71 271.2 175 78.9
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 7.8e-71 270.8 180 76.7
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.0e-70 270.4 181 77.9
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.3e-70 270.0 178 77.5
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-70 270.0 173 76.3
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.7e-70 269.6 177 76.8
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.7e-70 269.6 177 76.8
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.3e-70 269.2 172 79.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 2.3e-70 269.2 180 75.0
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.0e-70 268.9 181 75.1
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 3.9e-70 268.5 177 76.3
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 3.9e-70 268.5 177 76.3
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 3.9e-70 268.5 179 79.9
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 5.0e-70 268.1 174 77.6
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 6.6e-70 267.7 177 76.3
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-69 266.9 178 76.4
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.1e-69 266.9 178 79.8
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.9e-69 266.2 174 76.4
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.9e-69 266.2 174 77.0
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 1.6e-68 263.1 166 78.3
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 2.1e-68 262.7 186 74.7
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 2.1e-68 262.7 186 74.7
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 3.6e-68 261.9 174 77.0
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 6.2e-68 261.2 178 75.3
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 6.2e-68 261.2 174 74.7
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.0e-68 260.8 174 75.3
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.0e-68 260.8 174 75.3
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 8.0e-68 260.8 180 73.3
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.1e-67 260.4 178 77.5
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 8.9e-67 257.3 174 74.1
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 8.9e-67 257.3 174 75.9
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.2e-66 256.9 174 75.9
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.3e-65 253.4 173 74.0
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.3e-65 253.4 180 73.3
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 6.4e-65 251.1 177 72.3
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.9e-64 249.6 175 69.7
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.2e-64 248.8 176 72.2
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 4.1e-64 248.4 176 74.4
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 7.0e-64 247.7 175 74.3
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 9.2e-64 247.3 185 70.8
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.8e-63 244.2 175 70.3
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.3e-62 242.7 178 70.8
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.3e-62 242.7 181 69.1
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 2.3e-62 242.7 174 71.3
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.3e-62 242.7 175 69.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.9e-62 241.9 180 68.9
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 6.6e-62 241.1 150 78.0
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 1.1e-61 240.4 169 75.1
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 2.5e-61 239.2 178 71.3
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 4.3e-61 238.4 178 69.1
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 7.3e-61 237.7 179 70.9
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 9.5e-61 237.3 175 72.0
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.2e-60 236.9 173 69.9
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.8e-60 235.7 181 67.4
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 3.6e-60 235.3 249 54.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 4.7e-60 235.0 179 68.2
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 4.7e-60 235.0 177 71.2
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 6.2e-60 234.6 175 69.7
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.8e-59 233.0 172 70.3
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 4.0e-59 231.9 179 69.8
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 5.2e-59 231.5 157 75.8
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 6.8e-59 231.1 178 65.7
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 8.9e-59 230.7 143 78.3
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 2.0e-58 229.6 157 77.1
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 4.4e-58 228.4 191 67.0
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 9.9e-58 227.3 179 67.0
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 3.9e-54 215.3 166 68.7
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.1e-53 213.8 173 65.9
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-51 207.2 121 80.2
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.2e-51 204.9 179 65.4
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 6.4e-49 198.0 182 59.9
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.9e-48 196.4 195 61.0
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.5e-47 192.2 171 57.3
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 3.5e-47 192.2 143 63.6
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 4.6e-47 191.8 197 58.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.1e-45 187.2 146 63.7
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.1e-44 183.0 181 55.8
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.0e-39 164.9 89 86.5
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.3e-38 163.7 181 51.9
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.5e-37 160.2 116 70.7
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.3e-36 157.1 86 86.0
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.1e-36 156.4 174 53.4
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.4e-35 152.9 86 81.4
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 3.8e-33 145.6 130 59.2
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 4.9e-33 145.2 89 78.7
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 4.2e-32 142.1 112 66.1
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 3.0e-30 136.0 146 56.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.9e-29 133.3 131 56.5
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 6.4e-25 118.2 128 49.2
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.1e-24 117.5 86 70.9
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.2e-24 115.5 86 70.9
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.2e-23 114.0 126 46.0
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.6e-23 112.1 108 62.0
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.6e-23 112.1 108 62.0
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.1e-19 100.9 105 43.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 3.4e-18 95.9 149 38.9
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.1e-15 86.7 46 84.8
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 7.4e-13 78.2 65 61.5
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.6e-12 77.0 80 50.0
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 6.3e-12 75.1 97 40.2
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.1e-11 72.8 202 36.6
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 9.0e-11 71.2 79 51.9
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.5e-10 70.5 85 47.1


User provided reference genes

Program Settings