Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 1.2e-128 463.8 346 100.0
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 3.6e-101 372.5 263 85.2
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 5.5e-94 348.6 258 76.7
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.1e-89 334.3 274 69.7
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 6.8e-84 315.1 253 75.5
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 1.1e-81 307.8 261 72.0
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.0e-80 303.5 240 75.0
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 3.0e-79 299.7 273 65.2
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 3.9e-79 299.3 293 67.9
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 6.6e-79 298.5 273 61.5
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 1.5e-78 297.4 253 69.2
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 1.9e-78 297.0 273 64.5
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 3.3e-78 296.2 261 72.4
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 1.2e-77 294.3 248 70.6
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 8.0e-77 291.6 266 72.9
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.1e-76 291.2 261 72.8
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 1.8e-76 290.4 249 74.7
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 4.0e-76 289.3 287 67.6
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 4.0e-76 289.3 262 64.9
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.6e-75 286.6 261 72.0
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 9.8e-75 284.6 255 65.1
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 9.8e-75 284.6 174 83.3
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 1.9e-73 280.4 263 60.8
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 2.4e-73 280.0 289 59.2
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 4.1e-73 279.3 177 83.1
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 7.0e-73 278.5 174 82.8
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 1.6e-72 277.3 247 72.5
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 2.1e-72 276.9 172 82.6
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 4.6e-72 275.8 254 61.4
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 4.6e-72 275.8 238 76.5
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 6.0e-72 275.4 301 56.5
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 1.0e-71 274.6 254 62.6
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 3.0e-71 273.1 174 79.3
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 5.1e-71 272.3 174 82.2
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 8.6e-71 271.6 266 62.8
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 1.5e-70 270.8 244 61.9
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 1.5e-70 270.8 247 66.4
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 1.9e-70 270.4 224 67.0
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.3e-70 269.6 174 77.6
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 9.5e-70 268.1 246 65.4
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 9.5e-70 268.1 175 79.4
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 2.1e-69 266.9 256 68.8
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.1e-68 264.6 170 78.2
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.1e-68 264.6 260 58.5
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.8e-68 263.8 289 56.4
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 3.1e-68 263.1 300 58.0
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 6.8e-68 261.9 171 78.4
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.0e-67 260.4 170 77.6
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.6e-67 260.0 247 63.2
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 2.6e-67 260.0 170 77.6
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 3.4e-67 259.6 170 77.1
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 4.4e-67 259.2 175 78.3
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 4.4e-67 259.2 170 77.1
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 7.5e-67 258.5 171 76.6
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 7.5e-67 258.5 170 77.1
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 7.5e-67 258.5 245 60.4
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 1.3e-66 257.7 171 76.0
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 1.3e-66 257.7 171 76.0
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 1.3e-66 257.7 171 76.0
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 2.2e-66 256.9 174 75.9
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 6.4e-66 255.4 174 74.7
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 8.3e-66 255.0 170 78.8
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.4e-65 254.2 171 77.8
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.9e-65 253.8 272 60.7
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.9e-65 253.8 211 66.8
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 9.2e-65 251.5 175 76.6
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 1.6e-64 250.8 212 64.2
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 2.1e-64 250.4 247 63.6
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 4.6e-64 249.2 174 75.9
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 4.6e-64 249.2 174 75.9
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 7.8e-64 248.4 172 76.7
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.0e-63 248.1 171 74.9
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 1.2e-61 241.1 172 74.4
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 1.2e-61 241.1 169 74.0
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 1.6e-61 240.7 161 76.4
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 1.6e-61 240.7 161 76.4
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 1.6e-61 240.7 162 77.2
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.1e-61 240.4 176 71.6
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 2.1e-61 240.4 170 75.3
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 1.4e-60 237.7 172 75.6
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 2.4e-60 236.9 161 74.5
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 2.4e-60 236.9 246 66.3
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.4e-59 233.0 162 75.9
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 5.8e-59 232.3 168 74.4
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 9.9e-59 231.5 162 75.9
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 1.7e-58 230.7 219 62.6
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 8.4e-58 228.4 168 72.6
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 1.4e-57 227.6 166 72.9
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 1.9e-57 227.3 160 75.6
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 7.1e-57 225.3 200 64.5
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 2.1e-56 223.8 216 65.7
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 4.6e-56 222.6 160 76.2
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.7e-55 220.7 168 69.0
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 4.0e-52 209.5 172 64.0
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 4.4e-51 206.1 169 65.1
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 1.7e-50 204.1 224 54.9
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 2.2e-50 203.8 200 57.0
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.2e-49 199.9 174 66.1
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 6.0e-48 195.7 150 66.7
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 6.0e-48 195.7 150 66.7
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 1.0e-47 194.9 169 62.7
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 1.9e-46 190.7 125 77.6
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 3.3e-46 189.9 163 62.6
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 9.6e-46 188.3 173 58.4
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 3.4e-43 179.9 119 76.5
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 2.2e-42 177.2 200 57.0
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 2.5e-38 163.7 120 75.0
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 6.9e-36 155.6 125 68.0
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 4.0e-28 129.8 171 42.7
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 7.6e-27 125.6 111 66.7
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 2.9e-26 123.6 167 41.3
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 1.1e-25 121.7 72 86.1
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 2.1e-24 117.5 64 92.2
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 5.7e-22 109.4 107 60.7
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 2.1e-16 90.9 74 68.9
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 5.1e-15 86.3 125 49.6
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 6.7e-15 85.9 137 58.4
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 1.1e-14 85.1 128 46.9
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 5.7e-14 82.8 134 44.0
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.1e-12 78.6 108 50.0
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 1.8e-12 77.8 132 40.9
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 4.1e-12 76.6 40 92.5
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 9.1e-12 75.5 42 83.3
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.5e-11 74.7 39 92.3
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 2.5e-09 67.4 77 58.4
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 1.0e-07 62.0 40 75.0
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.3e-06 57.0 35 74.3


User provided reference genes

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