Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0168100 Rhododendron simsii HOM05D007651 ORTHO05D002997 6.0e-247 857.1 431 100.0
Rhsim04G0060600 Rhododendron simsii HOM05D007651 ORTHO05D000898 9.0e-118 427.9 597 46.9
Rhsim04G0115000 Rhododendron simsii HOM05D007651 ORTHO05D000898 2.5e-19 100.9 122 42.6
Rhsim01G0153500 Rhododendron simsii HOM05D011344 ORTHO05D016379 4.3e-19 100.1 179 36.9
Rhsim02G0102000 Rhododendron simsii HOM05D002347 ORTHO05D000898 5.6e-19 99.8 122 42.6
Rhsim02G0142200 Rhododendron simsii HOM05D007651 ORTHO05D000898 5.6e-19 99.8 122 42.6
Rhsim09G0109800 Rhododendron simsii HOM05D007651 ORTHO05D000898 5.6e-19 99.8 122 42.6
Rhsim05G0139900 Rhododendron simsii HOM05D007651 ORTHO05D000898 2.3e-17 94.4 212 32.5
Rhsim05G0160000 Rhododendron simsii HOM05D011344 ORTHO05D016379 2.3e-17 94.4 125 43.2
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 3.1e-17 94.0 143 32.9
Rhsim11G0015600 Rhododendron simsii HOM05D011344 ORTHO05D016379 8.9e-17 92.4 125 44.0
QL03p022565 Quercus lobata HOM05D007651 ORTHO05D000898 1.5e-16 91.7 143 32.2
RhsimUnG0074900 Rhododendron simsii HOM05D011344 ORTHO05D016379 3.4e-16 90.5 125 41.6
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 1.1e-14 85.5 146 34.9
Atru.chr10.462 Acer truncatum HOM05D004096 ORTHO05D000898 7.3e-11 72.8 84 39.3
RcHm_v2.0_Chr2g0155601 Rosa chinensis HOM05D004096 ORTHO05D000898 1.6e-10 71.6 68 44.1
FAN27G1870 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.1e-10 71.2 80 37.5
Nn3g19299 Nelumbo nucifera HOM05D007651 ORTHO05D000898 2.1e-10 71.2 84 36.9
FAN20G1880 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.8e-10 70.9 80 37.5
FvH4_2g09911 Fragaria vesca HOM05D004096 ORTHO05D000898 8.1e-10 69.3 80 37.5
FAN24G1944 Fragaria x ananassa HOM05D004096 ORTHO05D000898 8.1e-10 69.3 80 37.5
RcHm_v2.0_Chr6g0266671 Rosa chinensis HOM05D004096 ORTHO05D000898 8.1e-10 69.3 80 36.2
Hma1.2p1_0381F.1_g139960 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 1.1e-09 68.9 119 32.8
Atru.chr8.438 Acer truncatum HOM05D004096 ORTHO05D000898 2.4e-09 67.8 117 29.9
Glyma.10G201800 Glycine max HOM05D007651 ORTHO05D000898 4.0e-09 67.0 108 29.6
MD09G1260400 Malus domestica HOM05D007651 ORTHO05D001192 4.0e-09 67.0 108 30.6
Prupe.7G070100 Prunus persica HOM05D004096 ORTHO05D000898 4.0e-09 67.0 117 28.2
Rhsim02G0161600 Rhododendron simsii HOM05D011344 ORTHO05D016379 4.0e-09 67.0 108 35.2
CANSAT01G2817 Cannabis sativa HOM05D007651 ORTHO05D001192 5.2e-09 66.6 88 35.2
QL02p048445 Quercus lobata HOM05D007651 ORTHO05D001192 5.2e-09 66.6 88 34.1
Rhsim01G0134000 Rhododendron simsii HOM05D066245 ORTHO05D000898 5.2e-09 66.6 43 72.1
Peaxi162Scf00104g01921 Petunia axillaris HOM05D007651 ORTHO05D000898 6.8e-09 66.2 108 31.5
FvH4_7g31230 Fragaria vesca HOM05D000045 ORTHO05D000067 8.9e-09 65.9 97 28.9
Dinv15468 Davidia involucrata HOM05D008396 ORTHO05D000898 1.2e-08 65.5 77 33.8
Dinv40248 Davidia involucrata HOM05D008396 ORTHO05D000898 1.2e-08 65.5 155 27.7
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.5e-08 65.1 88 33.0
Dinv14218 Davidia involucrata HOM05D008396 ORTHO05D000898 1.5e-08 65.1 77 35.1
FAN13G2044 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.5e-08 65.1 116 32.8
FAN13G3102 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.5e-08 65.1 116 32.8
FAN14G2992 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.5e-08 65.1 77 32.5
FAN17G2177 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.5e-08 65.1 77 32.5
FAN18G1768 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.5e-08 65.1 116 32.8
FAN18G2232 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.5e-08 65.1 116 32.8
FAN23G0656 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.5e-08 65.1 77 32.5
Dinv01422 Davidia involucrata HOM05D008396 ORTHO05D000898 2.0e-08 64.7 91 34.1
FAN20G0331 Fragaria x ananassa HOM05D004096 ORTHO05D019141 2.0e-08 64.7 77 32.5
Gohir.D06G186000 Gossypium hirsutum HOM05D007651 ORTHO05D000898 2.0e-08 64.7 88 33.0
Potri.004G091800 Populus trichocarpa HOM05D007651 ORTHO05D000898 2.0e-08 64.7 88 34.1
Rhsim06G0015800 Rhododendron simsii HOM05D066245 ORTHO05D024735 2.0e-08 64.7 47 63.8
RcHm_v2.0_Chr6g0266661 Rosa chinensis HOM05D007993 ORTHO05D000898 2.0e-08 64.7 99 30.3
COL.COLO4_10042 Corchorus olitorius HOM05D007651 ORTHO05D000898 2.6e-08 64.3 88 33.0
Dinv07106 Davidia involucrata HOM05D008396 ORTHO05D000898 3.4e-08 63.9 91 34.1
Prupe.7G017400 Prunus persica HOM05D004096 ORTHO05D000898 3.4e-08 63.9 87 31.0
THA.LOC104805598 Tarenaya hassleriana HOM05D007651 ORTHO05D000898 3.4e-08 63.9 88 31.8
FAN28G1999 Fragaria x ananassa HOM05D004096 ORTHO05D010213 4.4e-08 63.5 116 31.9
RcHm_v2.0_Chr4g0423011 Rosa chinensis HOM05D004096 ORTHO05D000898 4.4e-08 63.5 81 30.9
Prupe.5G238300 Prunus persica HOM05D004096 ORTHO05D000898 5.8e-08 63.2 71 35.2
Ah.05g176190 Amaranthus hybridus HOM05D006463 ORTHO05D002997 7.6e-08 62.8 117 31.6
CAN.G11.14 Capsicum annuum HOM05D007651 ORTHO05D001192 7.6e-08 62.8 95 32.6
Nitab4.5_0000625g0020 Nicotiana tabacum HOM05D007651 ORTHO05D001192 7.6e-08 62.8 95 32.6
Nitab4.5_0000901g0120 Nicotiana tabacum HOM05D007651 ORTHO05D001192 7.6e-08 62.8 95 32.6
Sc12g0007730 Simmondsia chinensis HOM05D024065 ORTHO05D026145 7.6e-08 62.8 115 27.8
Sopen03g007480 Solanum pennellii HOM05D007651 ORTHO05D000898 7.6e-08 62.8 95 32.6
PGSC0003DMG400016690 Solanum tuberosum HOM05D007651 ORTHO05D000898 7.6e-08 62.8 95 32.6
Ah.09g225330 Amaranthus hybridus HOM05D006463 ORTHO05D002997 9.9e-08 62.4 117 31.6
Ah.14g082230 Amaranthus hybridus HOM05D006463 ORTHO05D002997 9.9e-08 62.4 117 31.6
Ciclev10021259m.g Citrus clementina HOM05D008396 ORTHO05D000898 9.9e-08 62.4 195 22.1
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 9.9e-08 62.4 101 27.7
FvH4_4g03350 Fragaria vesca HOM05D004096 ORTHO05D029627 9.9e-08 62.4 103 28.2
FAN21G3088 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.9e-08 62.4 77 31.2
Gohir.A06G176700 Gossypium hirsutum HOM05D007651 ORTHO05D000898 9.9e-08 62.4 88 31.8
Manes.03G097100 Manihot esculenta HOM05D007651 ORTHO05D001192 9.9e-08 62.4 88 31.8
Ah.03g145400 Amaranthus hybridus HOM05D006463 ORTHO05D002997 1.3e-07 62.0 117 31.6
Duzib106G0239 Durio zibethinus HOM05D007651 ORTHO05D000898 1.3e-07 62.0 88 31.8
Solyc03g043600.3 Solanum lycopersicum HOM05D007651 ORTHO05D000898 1.3e-07 62.0 95 31.6
Dinv08235 Davidia involucrata HOM05D008396 ORTHO05D000898 1.7e-07 61.6 91 30.8
Dinv09269 Davidia involucrata HOM05D008396 ORTHO05D000898 1.7e-07 61.6 91 33.0
Dinv12671 Davidia involucrata HOM05D008396 ORTHO05D000898 1.7e-07 61.6 81 35.8
Dinv13152 Davidia involucrata HOM05D008396 ORTHO05D000898 1.7e-07 61.6 91 33.0
FvH4_1g25481 Fragaria vesca HOM05D004096 ORTHO05D010213 1.7e-07 61.6 77 28.6
FvH4_2g25151 Fragaria vesca HOM05D004096 ORTHO05D010213 1.7e-07 61.6 77 28.6
FvH4_6g40321 Fragaria vesca HOM05D004096 ORTHO05D010213 1.7e-07 61.6 77 28.6
FAN13G0792 Fragaria x ananassa HOM05D017852 ORTHO05D000898 1.7e-07 61.6 81 29.6
FAN28G0827 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.7e-07 61.6 77 29.9
Migut.L00474 Erythranthe guttata HOM05D007651 ORTHO05D001192 2.2e-07 61.2 88 31.8
Gorai.010G218300 Gossypium raimondii HOM05D007651 ORTHO05D000898 2.2e-07 61.2 88 31.8
AUR62025070 Chenopodium quinoa HOM05D006463 ORTHO05D002997 2.9e-07 60.8 117 30.8
FAN02G1156 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.9e-07 60.8 116 31.9
Hma1.2p1_1820F.1_g304200 Hydrangea macrophylla HOM05D007651 ORTHO05D001192 2.9e-07 60.8 91 31.9
Cc02_g32350 Coffea canephora HOM05D002461 ORTHO05D000898 3.8e-07 60.5 113 33.6
Thecc.10G176700 Theobroma cacao HOM05D007651 ORTHO05D001192 3.8e-07 60.5 108 28.7
GSVIVG01030888001 Vitis vinifera HOM05D007651 ORTHO05D001192 3.8e-07 60.5 85 34.1
Ah.05g175690 Amaranthus hybridus HOM05D006463 ORTHO05D002997 4.9e-07 60.1 109 32.1
Ah.13g066380 Amaranthus hybridus HOM05D006463 ORTHO05D002997 4.9e-07 60.1 109 32.1
Ah.15g095980 Amaranthus hybridus HOM05D006463 ORTHO05D002997 4.9e-07 60.1 109 32.1
MSTRG.3530 Avicennia marina HOM05D007651 ORTHO05D001192 4.9e-07 60.1 88 33.0
AUR62022496 Chenopodium quinoa HOM05D006463 ORTHO05D002997 4.9e-07 60.1 118 32.2
Prupe.3G152100 Prunus persica HOM05D007651 ORTHO05D001192 4.9e-07 60.1 88 31.8
SGA_v2.0_scaffold174G39280 Striga asiatica HOM05D007651 ORTHO05D000898 4.9e-07 60.1 88 31.8
AUR62014151 Chenopodium quinoa HOM05D006463 ORTHO05D002997 6.4e-07 59.7 118 32.2
AUR62026206 Chenopodium quinoa HOM05D006463 ORTHO05D002997 6.4e-07 59.7 118 32.2
Dinv24488 Davidia involucrata HOM05D008396 ORTHO05D000898 6.4e-07 59.7 77 31.2
FAN24G0382 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.4e-07 59.7 72 31.9
FAN26G2536 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.4e-07 59.7 77 29.9
CSS0020998 Camellia sinensis var. sinensis HOM05D007651 ORTHO05D000898 8.4e-07 59.3 88 31.8
AUR62040414 Chenopodium quinoa HOM05D006463 ORTHO05D002997 8.4e-07 59.3 118 32.2
Dinv19003 Davidia involucrata HOM05D007651 ORTHO05D000898 8.4e-07 59.3 108 28.7
FAN12G1875 Fragaria x ananassa HOM05D004096 ORTHO05D000898 8.4e-07 59.3 100 30.0
Lsat_1_v5_gn_8_19140 Lactuca sativa HOM05D005502 ORTHO05D001421 8.4e-07 59.3 126 27.8
AUR62033286 Chenopodium quinoa HOM05D006463 ORTHO05D002997 1.1e-06 58.9 118 32.2
RcHm_v2.0_Chr1g0347831 Rosa chinensis HOM05D004096 ORTHO05D000898 1.1e-06 58.9 80 30.0
Ah.04g160940 Amaranthus hybridus HOM05D006463 ORTHO05D002997 1.4e-06 58.5 109 31.2
Cpa.g.sc116.14 Carica papaya HOM05D007651 ORTHO05D001192 1.4e-06 58.5 108 29.6
Dinv17955 Davidia involucrata HOM05D008396 ORTHO05D000898 1.4e-06 58.5 64 39.1
Dinv17956 Davidia involucrata HOM05D008396 ORTHO05D000898 1.4e-06 58.5 64 39.1
FAN06G1954 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.4e-06 58.5 90 32.2
AUR62027906 Chenopodium quinoa HOM05D006463 ORTHO05D002997 1.9e-06 58.2 118 32.2
AUR62039012 Chenopodium quinoa HOM05D006463 ORTHO05D002997 1.9e-06 58.2 118 31.4
AUR62039014 Chenopodium quinoa HOM05D006463 ORTHO05D002997 1.9e-06 58.2 118 31.4
Dinv10220 Davidia involucrata HOM05D008396 ORTHO05D000898 1.9e-06 58.2 64 37.5
ECA238G0783 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.9e-06 58.2 85 32.9
FvH4_4g05321 Fragaria vesca HOM05D004096 ORTHO05D000898 1.9e-06 58.2 81 29.6
Lsat_1_v5_gn_4_136680 Lactuca sativa HOM05D002069 ORTHO05D001421 1.9e-06 58.2 84 34.5
Ah.10g026780 Amaranthus hybridus HOM05D006463 ORTHO05D002997 2.4e-06 57.8 117 29.9
CiPaw.04G045400 Carya illinoinensis HOM05D007651 ORTHO05D001192 2.4e-06 57.8 88 30.7
AUR62033155 Chenopodium quinoa HOM05D006463 ORTHO05D002997 2.4e-06 57.8 89 33.7
FAN27G2070 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.4e-06 57.8 82 31.7
CSS0032349 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 3.2e-06 57.4 114 32.5
AUR62022349 Chenopodium quinoa HOM05D006463 ORTHO05D002997 3.2e-06 57.4 89 33.7
Dinv13142 Davidia involucrata HOM05D008396 ORTHO05D000898 3.2e-06 57.4 91 31.9
FAN15G0550 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.2e-06 57.4 103 30.1
FAN18G0847 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.2e-06 57.4 90 32.2
Lsat_1_v5_gn_2_81300 Lactuca sativa HOM05D007651 ORTHO05D000898 3.2e-06 57.4 90 31.1
RcHm_v2.0_Chr1g0372251 Rosa chinensis HOM05D004096 ORTHO05D000898 3.2e-06 57.4 81 29.6
AUR62038451 Chenopodium quinoa HOM05D006463 ORTHO05D002997 4.2e-06 57.0 118 31.4
AUR62044722 Chenopodium quinoa HOM05D006463 ORTHO05D002997 4.2e-06 57.0 118 31.4
Ciclev10002333m.g Citrus clementina HOM05D008396 ORTHO05D000898 4.2e-06 57.0 123 26.0
FAN15G0356 Fragaria x ananassa HOM05D004096 ORTHO05D000898 4.2e-06 57.0 77 26.0
Rhsim01G0159600 Rhododendron simsii HOM05D011344 ORTHO05D016379 4.2e-06 57.0 125 33.6
Atru.chr1.1775 Acer truncatum HOM05D007651 ORTHO05D001192 5.4e-06 56.6 88 30.7
Ciclev10011294m.g Citrus clementina HOM05D007651 ORTHO05D001192 5.4e-06 56.6 88 33.0
Lsat_1_v5_gn_4_110341 Lactuca sativa HOM05D002069 ORTHO05D001421 5.4e-06 56.6 109 29.4
Sc01g0004780 Simmondsia chinensis HOM05D024065 ORTHO05D000898 5.4e-06 56.6 91 29.7
AUR62030114 Chenopodium quinoa HOM05D002461 ORTHO05D000898 7.1e-06 56.2 80 36.2
AUR62037309 Chenopodium quinoa HOM05D006463 ORTHO05D002997 7.1e-06 56.2 90 36.7
Dinv36340 Davidia involucrata HOM05D008396 ORTHO05D000898 7.1e-06 56.2 88 28.4
FAN13G2291 Fragaria x ananassa HOM05D004096 ORTHO05D000898 7.1e-06 56.2 103 30.1
Atru.chr12.1974 Acer truncatum HOM05D008396 ORTHO05D000898 9.3e-06 55.8 81 33.3
Atru.chr3.1743 Acer truncatum HOM05D008396 ORTHO05D000898 9.3e-06 55.8 130 27.7
CSS0002149 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 9.3e-06 55.8 49 49.0
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 9.3e-06 55.8 85 31.8
Dinv08228 Davidia involucrata HOM05D008396 ORTHO05D000898 9.3e-06 55.8 91 28.6


User provided reference genes

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