Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0164000 Rhododendron simsii HOM05D006217 ORTHO05D008480 6.5e-256 887.9 886 100.0
vmacro19344 Vaccinium macrocarpon HOM05D006217 ORTHO05D008480 1.3e-163 581.3 963 69.1
CSS0020542 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 1.5e-156 557.8 883 78.0
CSS0050348 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 7.2e-146 522.3 881 75.1
CSS0026115 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 3.6e-145 520.0 881 75.5
Hma1.2p1_0572F.1_g181090 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 4.5e-140 503.1 882 79.5
Dinv13121 Davidia involucrata HOM05D006217 ORTHO05D008480 3.0e-136 490.3 883 80.3
MD14G1189200 Malus domestica HOM05D006217 ORTHO05D008480 2.8e-134 483.8 886 76.9
MD06G1183200 Malus domestica HOM05D006217 ORTHO05D008480 9.1e-133 478.8 882 73.6
Prupe.5G181900 Prunus persica HOM05D006217 ORTHO05D008480 7.7e-132 475.7 870 74.1
RcHm_v2.0_Chr7g0179951 Rosa chinensis HOM05D006217 ORTHO05D008480 2.5e-130 470.7 886 72.8
Nn4g22966 Nelumbo nucifera HOM05D006217 ORTHO05D008480 5.5e-130 469.5 881 72.8
FvH4_5g16180 Fragaria vesca HOM05D006217 ORTHO05D008480 1.2e-129 468.4 881 73.2
Actinidia04949 Actinidia chinensis HOM05D006217 ORTHO05D008480 3.0e-128 463.8 271 81.5
Manes.06G099200 Manihot esculenta HOM05D006217 ORTHO05D008480 4.4e-127 459.9 883 77.0
Peaxi162Scf00017g02228 Petunia axillaris HOM05D006217 ORTHO05D008480 1.7e-126 458.0 881 77.3
CANSAT80G1888 Cannabis sativa HOM05D006217 ORTHO05D008480 2.2e-126 457.6 883 78.7
CiPaw.11G034100 Carya illinoinensis HOM05D006217 ORTHO05D008480 2.4e-125 454.1 883 78.7
Ciclev10018817m.g Citrus clementina HOM05D006217 ORTHO05D008480 5.3e-125 453.0 883 77.6
QL10p013967 Quercus lobata HOM05D006217 ORTHO05D008480 9.1e-125 452.2 885 77.6
PGSC0003DMG400024573 Solanum tuberosum HOM05D006217 ORTHO05D008480 2.0e-124 451.1 881 76.2
CAN.G853.39 Capsicum annuum HOM05D006217 ORTHO05D008480 5.0e-123 446.4 881 75.7
Eucgr.K02896 Eucalyptus grandis HOM05D006217 ORTHO05D008480 6.5e-123 446.0 881 72.2
Sopen03g032670 Solanum pennellii HOM05D006217 ORTHO05D008480 6.5e-123 446.0 881 76.2
Lalb_Chr12g0201281 Lupinus albus HOM05D006217 ORTHO05D008480 1.9e-122 444.5 882 76.0
PGR044G0185 Punica granatum HOM05D006217 ORTHO05D008480 1.9e-122 444.5 883 76.6
DCAR_016511 Daucus carota HOM05D006217 ORTHO05D008480 3.2e-122 443.7 895 71.1
Solyc03g113630.3 Solanum lycopersicum HOM05D006217 ORTHO05D008480 7.2e-122 442.6 881 76.0
arahy.Tifrunner.gnm1.ann1.KCM1HB Arachis hypogaea HOM05D006217 ORTHO05D008480 1.2e-121 441.8 880 78.0
Aqoxy3G03170 Aquilegia oxysepala HOM05D006217 ORTHO05D008480 2.1e-121 441.0 893 71.4
ECA232G4291 Erigeron canadensis HOM05D006217 ORTHO05D008480 2.1e-121 441.0 895 77.2
Lj4g0005624 Lotus japonicus HOM05D006217 ORTHO05D008480 3.6e-121 440.3 883 77.6
arahy.Tifrunner.gnm1.ann1.C8Z94U Arachis hypogaea HOM05D006217 ORTHO05D008480 4.7e-121 439.9 880 77.7
MSTRG.23079 Avicennia marina HOM05D006217 ORTHO05D008480 8.0e-121 439.1 879 77.0
TPR.G38418 Trifolium pratense HOM05D006217 ORTHO05D008480 2.3e-120 437.6 886 75.1
Migut.I00075 Erythranthe guttata HOM05D006217 ORTHO05D008480 3.0e-120 437.2 882 77.3
CsaV3_1G008120 Cucumis sativus L. HOM05D006217 ORTHO05D008480 4.0e-120 436.8 883 75.4
TAR622G0668 Trochodendron aralioides HOM05D006217 ORTHO05D008480 6.8e-120 436.0 892 77.1
Atru.BG.200.p Acer truncatum HOM05D006217 ORTHO05D008480 8.8e-120 435.6 837 69.2
Cpa.g.sc35.13 Carica papaya HOM05D006217 ORTHO05D008480 3.4e-119 433.7 886 77.3
Haze_07417 Corylus avellana HOM05D006217 ORTHO05D008480 2.2e-118 431.0 885 77.5
Ca_21873_v3 Cicer arietinum L. HOM05D006217 ORTHO05D008480 2.8e-118 430.6 886 74.9
Lj9C455T7 Lonicera japonica HOM05D006217 ORTHO05D008480 3.7e-118 430.3 963 66.1
Sabra15G0093400 Salix brachista HOM05D006217 ORTHO05D008480 1.1e-117 428.7 882 76.8
Duzib205G0682 Durio zibethinus HOM05D006217 ORTHO05D008480 4.1e-117 426.8 881 77.3
Potri.015G069100 Populus trichocarpa HOM05D006217 ORTHO05D008480 1.2e-116 425.2 883 76.9
GSVIVG01007844001 Vitis vinifera HOM05D006217 ORTHO05D008480 3.5e-116 423.7 271 74.5
Psat4g055880 Pisum sativum HOM05D006217 ORTHO05D008480 4.5e-116 423.3 887 71.1
COL.COLO4_26823 Corchorus olitorius HOM05D006217 ORTHO05D008480 7.7e-116 422.5 881 76.4
Gohir.D12G277600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 1.0e-115 422.2 846 79.1
Gorai.008G298300 Gossypium raimondii HOM05D006217 ORTHO05D008480 1.0e-115 422.2 846 78.4
MELO3C002229.2 Cucumis melo HOM05D006217 ORTHO05D008480 1.7e-115 421.4 881 70.4
Gohir.A12G276600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 2.3e-115 421.0 846 79.1
Medtr4g107210 Medicago truncatula HOM05D006217 ORTHO05D008480 2.3e-115 421.0 887 76.4
HanXRQChr16g0503451 Helianthus annuus HOM05D006217 ORTHO05D008480 9.5e-114 415.6 895 76.5
AUR62008306 Chenopodium quinoa HOM05D006217 ORTHO05D008480 2.1e-113 414.5 884 75.5
Glyma.05G032300 Glycine max HOM05D006217 ORTHO05D008480 2.8e-113 414.1 886 76.1
Sc12g0005700 Simmondsia chinensis HOM05D006217 ORTHO05D008480 3.6e-113 413.7 884 70.8
AUR62021789 Chenopodium quinoa HOM05D006217 ORTHO05D008480 4.7e-113 413.3 884 76.1
SalBow5G1548 Salvia bowleyana HOM05D006217 ORTHO05D008480 2.0e-111 407.9 882 76.2
TWI15G0191 Tripterygium wilfordii HOM05D006217 ORTHO05D008480 3.4e-111 407.1 886 76.3
Cc04_g16120 Coffea canephora HOM05D006217 ORTHO05D008480 2.2e-110 404.4 271 72.3
Glyma.17G094300 Glycine max HOM05D006217 ORTHO05D008480 1.2e-108 398.7 887 75.6
ClCG01G014190 Citrullus lanatus HOM05D006217 ORTHO05D008480 5.9e-108 396.4 883 75.0
SGA_v2.0_scaffold56G20089 Striga asiatica HOM05D006217 ORTHO05D008480 5.6e-106 389.8 877 74.7
EL10Ac5g10869 Beta vulgaris HOM05D006217 ORTHO05D008480 7.3e-106 389.4 884 75.3
Phvul.003G195800 Phaseolus vulgaris HOM05D006217 ORTHO05D008480 1.2e-105 388.7 825 78.2
Lsat_1_v5_gn_4_74540 Lactuca sativa HOM05D006217 ORTHO05D008480 2.1e-105 387.9 881 75.8
THA.LOC104809230 Tarenaya hassleriana HOM05D006217 ORTHO05D008480 6.1e-105 386.3 880 75.8
Carub.0002s2163 Capsella rubella HOM05D006217 ORTHO05D008480 1.2e-103 382.1 883 75.2
BcaC08g46912 Brassica carinata HOM05D006217 ORTHO05D008480 7.5e-103 379.4 881 61.4
MBI15_g21026_MAGBIO Magnolia biondii HOM05D006217 ORTHO05D008480 1.3e-102 378.6 883 70.9
AL2G34730 Arabidopsis lyrata HOM05D006217 ORTHO05D008480 1.7e-102 378.3 883 75.3
Thhalv10018112m.g Eutrema salsugineum HOM05D006217 ORTHO05D008480 4.9e-102 376.7 883 75.1
Sp5g29980 Schrenkiella parvula HOM05D006217 ORTHO05D008480 8.3e-102 375.9 880 75.0
AT1G74850 Arabidopsis thaliana HOM05D006217 ORTHO05D008480 1.4e-101 375.2 883 75.3
A07p40490 Brassica napus HOM05D006217 ORTHO05D008480 1.4e-101 375.2 881 74.7
Aa31LG4G5060 Aethionema arabicum HOM05D006217 ORTHO05D008480 2.4e-101 374.4 857 76.8
BraA07t31592Z Brassica rapa HOM05D006217 ORTHO05D008480 2.4e-101 374.4 881 74.7
C06p48860 Brassica napus HOM05D006217 ORTHO05D008480 7.0e-101 372.9 881 74.7
BolC6t39922H Brassica oleracea HOM05D006217 ORTHO05D008480 7.0e-101 372.9 881 74.7
Hund02699 Selenicereus undatus HOM05D006217 ORTHO05D008480 9.2e-101 372.5 885 69.9
PSO591G0410 Papaver somniferum HOM05D006217 ORTHO05D008480 1.2e-100 372.1 883 74.0
PSO832G0921 Papaver somniferum HOM05D006217 ORTHO05D008480 2.7e-100 370.9 884 74.2
BcaC08g46950 Brassica carinata HOM05D006217 ORTHO05D008480 4.6e-100 370.2 881 74.8
ATR0681G229 Amborella trichopoda HOM05D006217 ORTHO05D008480 1.6e-89 335.1 876 68.0
CDE10G0055 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 1.7e-86 325.1 846 71.2
CDE10G0083 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 1.7e-86 325.1 850 70.7
CARHR068160 Cardamine hirsuta HOM05D006217 ORTHO05D008480 7.3e-82 309.7 224 67.4
BcaC08g46908 Brassica carinata HOM05D006217 ORTHO05D008480 6.2e-81 306.6 240 62.1
HPP92_019917 Vanilla planifolia HOM05D006217 ORTHO05D008480 6.2e-81 306.6 841 71.8
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 2.2e-78 298.1 255 55.7
VMungo1215G1148 Vigna mungo HOM05D006217 ORTHO05D008480 3.8e-78 297.4 245 61.6
Ah.11g046350 Amaranthus hybridus HOM05D006217 ORTHO05D008480 1.7e-75 288.5 734 75.5
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 1.7e-75 288.5 248 54.0
unitig_750.g28482 Utricularia gibba HOM05D006217 ORTHO05D008480 1.6e-73 282.0 232 59.5
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 2.8e-73 281.2 879 65.4
Sed0019903 Sechium edule HOM05D006217 ORTHO05D008480 2.8e-65 254.6 734 80.1
FAN18G2370 Fragaria x ananassa HOM05D006217 ORTHO05D008480 3.0e-59 234.6 881 63.5
FAN04G0516 Fragaria x ananassa HOM05D006217 ORTHO05D008480 3.9e-59 234.2 879 63.3
FAN13G2523 Fragaria x ananassa HOM05D006217 ORTHO05D008480 5.1e-59 233.8 881 63.5
FAN08G1390 Fragaria x ananassa HOM05D006217 ORTHO05D008480 1.5e-58 232.3 881 63.1
SEGI_32227 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 7.4e-58 229.9 223 51.6
ECA232G0106 Erigeron canadensis HOM05D006217 ORTHO05D008480 2.0e-55 221.9 232 54.3
Hma1.2p1_0572F.1_g181080 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 8.4e-54 216.5 289 65.1
CARHR068170 Cardamine hirsuta HOM05D006217 ORTHO05D008480 1.3e-51 209.1 290 64.8
Thecc.03G001400 Theobroma cacao HOM05D006217 ORTHO05D008480 2.3e-51 208.4 288 65.3
Mapoly0003s0152 Marchantia polymorpha HOM05D006217 ORTHO05D008480 7.4e-50 203.4 822 68.5
VMungo1215G2521 Vigna mungo HOM05D006217 ORTHO05D008480 2.2e-46 191.8 285 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2637 Anthoceros agrestis HOM05D006217 ORTHO05D008480 5.5e-45 187.2 841 66.9
Pp3c11_11830 Physcomitrium patens HOM05D006217 ORTHO05D008480 2.3e-43 181.8 201 42.8
unitig_750.g28484 Utricularia gibba HOM05D006217 ORTHO05D008480 4.3e-42 177.6 253 56.1
SMO353G0114 Selaginella moellendorffii HOM05D006217 ORTHO05D008480 2.8e-41 174.9 812 61.6
CBR_g63077 Chara braunii HOM05D006217 ORTHO05D008480 1.3e-30 139.4 271 50.9
AUR62021792 Chenopodium quinoa HOM05D006217 ORTHO05D008480 3.0e-19 101.7 142 85.2
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 2.0e-18 99.0 202 30.7
Pp3c4_4900 Physcomitrium patens HOM05D006217 ORTHO05D005119 3.8e-14 84.7 194 27.3
Lsat_1_v5_gn_3_59501 Lactuca sativa HOM05D001195 ORTHO05D001138 1.9e-13 82.4 50 68.0
TPR.G3276 Trifolium pratense HOM05D004127 ORTHO05D005119 6.8e-11 73.9 203 27.1
FvH4_5g08849 Fragaria vesca HOM05D006217 ORTHO05D008480 8.8e-11 73.6 56 57.1
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 8.8e-11 73.6 203 24.1
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 1.5e-10 72.8 175 26.3
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 2.6e-10 72.0 158 32.3
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 3.4e-10 71.6 207 24.6
PSO357G0209 Papaver somniferum HOM05D004127 ORTHO05D005119 3.4e-10 71.6 200 25.0
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 3.4e-10 71.6 203 25.1
Ciclev10018807m.g Citrus clementina HOM05D004127 ORTHO05D005119 5.7e-10 70.9 209 24.4
Nitab4.5_0000363g0190 Nicotiana tabacum HOM05D004127 ORTHO05D005119 7.5e-10 70.5 200 24.0
Nitab4.5_0007407g0040 Nicotiana tabacum HOM05D004127 ORTHO05D005119 7.5e-10 70.5 200 24.0
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 7.5e-10 70.5 203 24.1
Gohir.D11G112800 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.3e-09 69.7 207 23.7
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 1.7e-09 69.3 200 24.5
Haze_05068 Corylus avellana HOM05D004127 ORTHO05D005119 1.7e-09 69.3 184 25.0
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.7e-09 69.3 207 24.2
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 1.7e-09 69.3 207 24.2
BcaB02g10389 Brassica carinata HOM05D004127 ORTHO05D005119 2.2e-09 68.9 258 23.6
CBR_g41643 Chara braunii HOM05D005862 ORTHO05D007731 2.2e-09 68.9 116 33.6
Peaxi162Scf00058g02410 Petunia axillaris HOM05D004127 ORTHO05D005119 2.2e-09 68.9 200 24.5
QL12p019388 Quercus lobata HOM05D004127 ORTHO05D005119 2.2e-09 68.9 203 24.1
Sed0017741 Sechium edule HOM05D006217 ORTHO05D011532 2.2e-09 68.9 111 36.0
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 2.8e-09 68.6 235 23.0
TWI75G0020 Tripterygium wilfordii HOM05D004127 ORTHO05D005119 2.8e-09 68.6 201 24.4
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 3.7e-09 68.2 184 24.5
Atru.BG.78.p Acer truncatum HOM05D004127 ORTHO05D005119 4.8e-09 67.8 210 24.8
Cfa005772 Carpinus fangiana HOM05D004127 ORTHO05D005119 4.8e-09 67.8 184 25.0
Actinidia25862 Actinidia chinensis HOM05D004127 ORTHO05D005119 6.3e-09 67.4 203 24.1
Aa31LG1G8250 Aethionema arabicum HOM05D004127 ORTHO05D005119 6.3e-09 67.4 201 24.4
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 8.3e-09 67.0 207 23.7
ECA247G3842 Erigeron canadensis HOM05D004127 ORTHO05D005119 8.3e-09 67.0 209 23.9
Thhalv10006755m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 1.1e-08 66.6 203 23.6
Gohir.A11G108300 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.1e-08 66.6 207 23.7
Gorai.007G121300 Gossypium raimondii HOM05D004127 ORTHO05D005119 1.1e-08 66.6 207 23.7
A05p14200 Brassica napus HOM05D004127 ORTHO05D005119 1.4e-08 66.2 201 24.4
Lsat_1_v5_gn_9_4701 Lactuca sativa HOM05D004127 ORTHO05D005119 1.4e-08 66.2 207 24.2
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 1.4e-08 66.2 207 24.2
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 1.4e-08 66.2 203 23.2
Solyc06g009520.3 Solanum lycopersicum HOM05D004127 ORTHO05D005119 1.8e-08 65.9 200 23.0
Sopen06g004180 Solanum pennellii HOM05D004127 ORTHO05D005119 1.8e-08 65.9 200 23.0
Thecc.01G315900 Theobroma cacao HOM05D004127 ORTHO05D005119 2.4e-08 65.5 207 23.7
HanXRQChr10g0285041 Helianthus annuus HOM05D004127 ORTHO05D005119 3.1e-08 65.1 209 23.4
PGSC0003DMG402007298 Solanum tuberosum HOM05D004127 ORTHO05D005119 3.1e-08 65.1 200 23.0
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 4.1e-08 64.7 184 24.5
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 7.0e-08 63.9 164 23.8
CiPaw.07G119200 Carya illinoinensis HOM05D004127 ORTHO05D005119 9.1e-08 63.5 188 25.0
CBR_g31210 Chara braunii HOM05D004127 ORTHO05D005119 9.1e-08 63.5 169 26.0
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 1.2e-07 63.2 204 23.0
CAN.G1280.36 Capsicum annuum HOM05D004127 ORTHO05D005119 1.6e-07 62.8 200 21.5
Duzib138G0806 Durio zibethinus HOM05D004127 ORTHO05D005119 1.6e-07 62.8 204 23.0
Oeu058159.1 Olea europaea HOM05D004127 ORTHO05D005119 1.6e-07 62.8 203 23.6
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 2.0e-07 62.4 203 22.7
Potri.016G006800 Populus trichocarpa HOM05D002244 ORTHO05D002269 3.5e-07 61.6 149 22.8
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 5.9e-07 60.8 203 22.7
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 5.9e-07 60.8 184 22.8
Rhsim01G0292100 Rhododendron simsii HOM05D004127 ORTHO05D005119 7.7e-07 60.5 167 23.4
Lj1P1246T17 Lonicera japonica HOM05D002244 ORTHO05D002269 1.3e-06 59.7 136 26.5
Pp3c8_15500 Physcomitrium patens HOM05D054395 ORTHO05D048776 2.2e-06 58.9 67 41.8
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 6.5e-06 57.4 63 33.3
Duzib235G0088 Durio zibethinus HOM05D002244 ORTHO05D002269 8.5e-06 57.0 128 24.2
VMungo1215G0876 Vigna mungo HOM05D002244 ORTHO05D002269 8.5e-06 57.0 129 24.0


User provided reference genes

Program Settings