Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0147200 Rhododendron simsii HOM05D004132 ORTHO05D018840 2.6e-152 542.0 264 100.0
Rhsim02G0198900 Rhododendron simsii HOM05D004132 ORTHO05D018840 2.7e-93 345.9 207 84.5
Rhsim01G0214100 Rhododendron simsii HOM05D004132 ORTHO05D018840 1.1e-73 280.8 214 70.1
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 7.6e-51 204.9 127 76.4
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 8.4e-50 201.4 116 81.0
CSS0033836 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D018840 1.7e-47 193.7 116 77.6
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 2.3e-47 193.4 126 71.4
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 6.6e-47 191.8 126 70.6
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 4.3e-46 189.1 107 80.4
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 7.3e-46 188.3 103 81.6
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 9.6e-46 188.0 103 81.6
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 2.1e-45 186.8 127 68.5
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 2.8e-45 186.4 126 68.3
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 2.8e-45 186.4 103 80.6
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.8e-45 186.4 107 80.4
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 3.6e-45 186.0 103 79.6
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 4.7e-45 185.7 103 79.6
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 4.7e-45 185.7 103 79.6
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 4.7e-45 185.7 126 69.0
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 4.7e-45 185.7 103 81.6
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 6.2e-45 185.3 103 80.6
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 6.2e-45 185.3 103 79.6
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 6.2e-45 185.3 107 78.5
GSVIVG01020335001 Vitis vinifera HOM05D004132 ORTHO05D006273 6.2e-45 185.3 136 68.4
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 8.1e-45 184.9 103 80.6
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 8.1e-45 184.9 103 78.6
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 1.1e-44 184.5 103 79.6
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 1.1e-44 184.5 103 79.6
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 1.1e-44 184.5 126 68.3
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 1.1e-44 184.5 102 81.4
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 1.4e-44 184.1 103 78.6
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 1.4e-44 184.1 126 68.3
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 1.8e-44 183.7 103 78.6
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 2.4e-44 183.3 103 79.6
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 2.4e-44 183.3 126 67.5
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 2.4e-44 183.3 126 67.5
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 3.1e-44 183.0 126 67.5
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 4.0e-44 182.6 103 79.6
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 4.0e-44 182.6 103 78.6
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 4.0e-44 182.6 126 68.3
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 4.0e-44 182.6 103 78.6
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 5.2e-44 182.2 131 67.9
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 6.8e-44 181.8 103 78.6
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 6.8e-44 181.8 103 78.6
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 6.8e-44 181.8 126 67.5
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 6.8e-44 181.8 103 77.7
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 6.8e-44 181.8 102 79.4
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 6.8e-44 181.8 104 77.9
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 1.2e-43 181.0 103 77.7
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.2e-43 181.0 103 78.6
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.2e-43 181.0 103 78.6
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 1.2e-43 181.0 102 79.4
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 1.2e-43 181.0 102 80.4
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 1.2e-43 181.0 103 78.6
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 1.5e-43 180.6 102 77.5
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 2.0e-43 180.3 116 73.3
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 2.0e-43 180.3 126 67.5
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 2.0e-43 180.3 102 78.4
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 2.0e-43 180.3 103 77.7
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 2.0e-43 180.3 128 66.4
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 2.0e-43 180.3 103 78.6
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 2.6e-43 179.9 103 78.6
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 2.6e-43 179.9 126 66.7
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 2.6e-43 179.9 103 77.7
GSVIVG01020347001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.6e-43 179.9 136 66.2
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 3.4e-43 179.5 107 78.5
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 4.4e-43 179.1 107 78.5
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 4.4e-43 179.1 103 77.7
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 5.8e-43 178.7 102 76.5
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 5.8e-43 178.7 103 77.7
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 5.8e-43 178.7 103 77.7
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 5.8e-43 178.7 103 77.7
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 7.6e-43 178.3 103 78.6
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 9.9e-43 177.9 103 77.7
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 9.9e-43 177.9 126 65.9
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 1.3e-42 177.6 102 76.5
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 1.3e-42 177.6 103 77.7
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 1.3e-42 177.6 103 77.7
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 1.3e-42 177.6 103 76.7
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 1.3e-42 177.6 103 77.7
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 2.2e-42 176.8 133 63.2
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 2.2e-42 176.8 103 75.7
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 2.2e-42 176.8 103 75.7
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 2.2e-42 176.8 103 77.7
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 2.9e-42 176.4 102 75.5
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 2.9e-42 176.4 103 77.7
Oeu056055.1 Olea europaea HOM05D004132 ORTHO05D006273 2.9e-42 176.4 102 79.4
QL04p095492 Quercus lobata HOM05D004132 ORTHO05D018840 2.9e-42 176.4 121 66.1
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 2.9e-42 176.4 102 78.4
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 3.8e-42 176.0 103 75.7
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 4.9e-42 175.6 103 76.7
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 4.9e-42 175.6 126 66.7
SEGI_05248 Sequoiadendron giganteum HOM05D004132 ORTHO05D006273 4.9e-42 175.6 131 64.1
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 6.4e-42 175.3 102 77.5
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 6.4e-42 175.3 126 64.3
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 8.4e-42 174.9 103 75.7
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 1.1e-41 174.5 103 76.7
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 1.1e-41 174.5 103 76.7
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 1.4e-41 174.1 103 76.7
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 1.4e-41 174.1 135 63.0
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 1.9e-41 173.7 103 76.7
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 1.9e-41 173.7 103 76.7
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 1.9e-41 173.7 103 76.7
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 1.9e-41 173.7 103 76.7
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 1.9e-41 173.7 103 75.7
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 2.4e-41 173.3 107 75.7
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 2.4e-41 173.3 103 75.7
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 3.2e-41 172.9 103 76.7
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 4.2e-41 172.6 103 75.7
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 4.2e-41 172.6 103 75.7
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 4.2e-41 172.6 103 74.8
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 5.4e-41 172.2 103 76.7
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 5.4e-41 172.2 103 72.8
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 7.1e-41 171.8 103 75.7
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 7.1e-41 171.8 103 75.7
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 7.1e-41 171.8 103 73.8
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 7.1e-41 171.8 102 75.5
Rhsim06G0102600 Rhododendron simsii HOM05D004132 ORTHO05D018840 9.3e-41 171.4 146 63.7
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 9.3e-41 171.4 103 75.7
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.2e-40 171.0 103 73.8
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 1.2e-40 171.0 102 75.5
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 1.6e-40 170.6 131 59.5
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 1.6e-40 170.6 103 75.7
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 4.6e-40 169.1 103 71.8
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 1.3e-39 167.5 99 75.8
Hma1.2p1_0634F.1_g192870 Hydrangea macrophylla HOM05D004132 ORTHO05D018840 3.9e-39 166.0 118 65.3
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 8.7e-39 164.9 193 47.7
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 8.7e-39 164.9 103 72.8
Oeu050047.1 Olea europaea HOM05D004132 ORTHO05D018840 2.5e-38 163.3 102 73.5
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 7.3e-38 161.8 131 57.3
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 3.6e-37 159.5 109 65.1
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 2.4e-36 156.8 97 71.1
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 5.3e-36 155.6 102 66.7
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 9.0e-36 154.8 103 65.0
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 1.1e-33 147.9 102 64.7
FAN21G3660 Fragaria x ananassa HOM05D004132 ORTHO05D035098 9.6e-30 134.8 94 67.0
GSVIVG01020319001 Vitis vinifera HOM05D004132 ORTHO05D035098 1.8e-28 130.6 73 82.2
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 3.4e-27 126.3 102 59.8
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 1.9e-25 120.6 78 73.1
ECA233G2583 Erigeron canadensis HOM05D004132 ORTHO05D006273 1.6e-21 107.5 103 51.5
Haze_26151 Corylus avellana HOM05D004132 ORTHO05D006273 1.3e-18 97.8 89 51.7
Rhsim07G0156000 Rhododendron simsii HOM05D004132 ORTHO05D340189 1.2e-16 91.3 52 90.4
Cfa022583 Carpinus fangiana HOM05D004132 ORTHO05D006273 2.3e-15 87.0 81 50.6
Hma1.2p1_0666F.1_g199485 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 2.5e-14 83.6 43 79.1
Dinv25394 Davidia involucrata HOM05D004132 ORTHO05D006273 1.3e-13 81.3 47 72.3
Rhsim08G0191600 Rhododendron simsii HOM05D000159 ORTHO05D000148 8.5e-10 68.6 43 79.1
GSVIVG01012128001 Vitis vinifera HOM05D004132 ORTHO05D006273 5.5e-09 65.9 98 43.9


User provided reference genes

Program Settings