Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0143400 Rhododendron simsii HOM05D002230 ORTHO05D010968 2.1e-119 432.6 249 100.0
Rhsim08G0127600 Rhododendron simsii HOM05D009613 ORTHO05D012253 2.2e-60 236.5 109 97.2
Rhsim07G0153600 Rhododendron simsii HOM05D015182 ORTHO05D010968 7.9e-50 201.4 110 79.1
vmacro16180 Vaccinium macrocarpon HOM05D002230 ORTHO05D002441 3.9e-33 146.0 174 70.1
vmacro07191 Vaccinium macrocarpon HOM05D015182 ORTHO05D010968 9.1e-30 134.8 110 58.2
vmacro23372 Vaccinium macrocarpon HOM05D015182 ORTHO05D010968 9.1e-30 134.8 110 58.2
Actinidia32938 Actinidia chinensis HOM05D002230 ORTHO05D002441 3.4e-29 132.9 173 64.2
vmacro10773 Vaccinium macrocarpon HOM05D015182 ORTHO05D000827 1.9e-27 127.1 110 55.5
Cc03_g10880 Coffea canephora HOM05D002230 ORTHO05D002441 5.5e-27 125.6 173 61.8
Dinv36883 Davidia involucrata HOM05D002230 ORTHO05D002441 3.6e-26 122.9 119 83.2
Prupe.1G548200 Prunus persica HOM05D002230 ORTHO05D002441 1.8e-25 120.6 120 80.8
Dinv07890 Davidia involucrata HOM05D002230 ORTHO05D002441 2.3e-25 120.2 75 81.3
Migut.A00192 Erythranthe guttata HOM05D002230 ORTHO05D002441 2.3e-25 120.2 176 43.2
CSS0042856 Camellia sinensis var. sinensis HOM05D002230 ORTHO05D002441 3.0e-25 119.8 171 62.6
Hma1.2p1_0007F.1_g004970 Hydrangea macrophylla HOM05D002230 ORTHO05D002441 3.9e-25 119.4 183 59.0
Dinv44229 Davidia involucrata HOM05D002230 ORTHO05D002441 6.7e-25 118.6 75 81.3
Lj1A1071T61 Lonicera japonica HOM05D002230 ORTHO05D002441 8.8e-25 118.2 121 55.4
Prupe.8G069100 Prunus persica HOM05D002230 ORTHO05D002441 8.8e-25 118.2 120 80.8
DCAR_027245 Daucus carota HOM05D002230 ORTHO05D002441 1.1e-24 117.9 75 80.0
TAR627G1002 Trochodendron aralioides HOM05D002230 ORTHO05D002441 2.6e-24 116.7 75 80.0
MD00G1071300 Malus domestica HOM05D002230 ORTHO05D002441 3.3e-24 116.3 120 75.0
Atru.chr4.1347 Acer truncatum HOM05D002230 ORTHO05D002441 4.4e-24 115.9 75 77.3
CANSAT54G2648 Cannabis sativa HOM05D002230 ORTHO05D002441 5.7e-24 115.5 75 74.7
Ciclev10018567m.g Citrus clementina HOM05D002230 ORTHO05D002441 5.7e-24 115.5 122 63.1
Eucgr.A00036 Eucalyptus grandis HOM05D002230 ORTHO05D002441 9.7e-24 114.8 75 78.7
Nn3g21087 Nelumbo nucifera HOM05D002230 ORTHO05D002441 9.7e-24 114.8 75 78.7
Thecc.10G116300 Theobroma cacao HOM05D002230 ORTHO05D002441 1.3e-23 114.4 122 59.8
TWI38G2091 Tripterygium wilfordii HOM05D002230 ORTHO05D002441 1.7e-23 114.0 75 76.0
Haze_01398 Corylus avellana HOM05D002230 ORTHO05D002441 2.2e-23 113.6 130 51.5
SGA_v2.0_scaffold172G39053 Striga asiatica HOM05D002230 ORTHO05D002441 4.8e-23 112.5 118 51.7
CiPaw.01G173300 Carya illinoinensis HOM05D002230 ORTHO05D002441 6.3e-23 112.1 76 78.9
GSVIVG01020936001 Vitis vinifera HOM05D002230 ORTHO05D002441 8.2e-23 111.7 75 76.0
Ciclev10027707m.g Citrus clementina HOM05D002230 ORTHO05D002441 1.1e-22 111.3 120 64.2
Gorai.011G229500 Gossypium raimondii HOM05D002230 ORTHO05D002441 1.1e-22 111.3 122 63.9
MBI04_g09487_MAGBIO Magnolia biondii HOM05D002230 ORTHO05D002441 1.1e-22 111.3 75 76.0
Gohir.D10G204500 Gossypium hirsutum HOM05D002230 ORTHO05D002441 1.4e-22 110.9 122 63.1
ClCG09G010650 Citrullus lanatus HOM05D002230 ORTHO05D002441 1.8e-22 110.5 75 74.7
Gohir.D03G126950 Gossypium hirsutum HOM05D002230 ORTHO05D002441 1.8e-22 110.5 122 63.1
Cfa015221 Carpinus fangiana HOM05D002230 ORTHO05D002441 3.1e-22 109.8 76 75.0
Gohir.A03G041200 Gossypium hirsutum HOM05D002230 ORTHO05D002441 3.1e-22 109.8 122 69.7
Gorai.003G133300 Gossypium raimondii HOM05D002230 ORTHO05D002441 3.1e-22 109.8 122 63.1
Gohir.A10G197400 Gossypium hirsutum HOM05D002230 ORTHO05D002441 4.1e-22 109.4 75 74.7
MD03G1154000 Malus domestica HOM05D002230 ORTHO05D002441 4.1e-22 109.4 121 72.7
Duzib114G0665 Durio zibethinus HOM05D002230 ORTHO05D002441 5.3e-22 109.0 122 57.4
Sed0010811 Sechium edule HOM05D002230 ORTHO05D002441 5.3e-22 109.0 75 73.3
QL03p066506 Quercus lobata HOM05D002230 ORTHO05D002441 7.0e-22 108.6 180 56.7
MELO3C013185.2 Cucumis melo HOM05D002230 ORTHO05D002441 1.2e-21 107.8 75 74.7
Sed0001302 Sechium edule HOM05D002230 ORTHO05D002441 1.2e-21 107.8 118 75.4
CsaV3_7G021630 Cucumis sativus L. HOM05D002230 ORTHO05D002441 2.0e-21 107.1 75 72.0
HPP92_015122 Vanilla planifolia HOM05D002230 ORTHO05D002441 2.0e-21 107.1 75 72.0
CDE06G0512 Ceratophyllum demersum HOM05D002230 ORTHO05D002441 3.4e-21 106.3 75 77.3
SHI00660 Sapria himalayana HOM05D002230 ORTHO05D002441 3.4e-21 106.3 75 74.7
Cpa.g.sc9.331 Carica papaya HOM05D002230 ORTHO05D002441 4.5e-21 105.9 126 52.4
SalBow4G2246 Salvia bowleyana HOM05D002230 ORTHO05D002441 4.5e-21 105.9 75 72.0
RcHm_v2.0_Chr5g0051051 Rosa chinensis HOM05D002230 ORTHO05D002441 5.9e-21 105.5 120 73.3
Peaxi162Scf00282g00128 Petunia axillaris HOM05D002230 ORTHO05D002441 7.7e-21 105.1 122 68.0
CSS0011706 Camellia sinensis var. sinensis HOM05D002230 ORTHO05D002441 1.0e-20 104.8 121 52.1
Ciclev10027721m.g Citrus clementina HOM05D002230 ORTHO05D002441 1.3e-20 104.4 193 45.6
RcHm_v2.0_Chr4g0406311 Rosa chinensis HOM05D002230 ORTHO05D002441 1.3e-20 104.4 120 73.3
Aa31LG1G7760 Aethionema arabicum HOM05D002230 ORTHO05D002441 2.2e-20 103.6 128 47.7
Lalb_Chr19g0138431 Lupinus albus HOM05D002230 ORTHO05D002441 2.2e-20 103.6 120 65.8
Oeu023211.3 Olea europaea HOM05D002230 ORTHO05D002441 2.9e-20 103.2 75 69.3
Solyc01g097640.3 Solanum lycopersicum HOM05D002230 ORTHO05D002441 2.9e-20 103.2 119 64.7
Sopen00g003550 Solanum pennellii HOM05D002230 ORTHO05D002441 2.9e-20 103.2 119 60.5
Sopen01g041250 Solanum pennellii HOM05D002230 ORTHO05D002441 2.9e-20 103.2 119 60.5
Manes.09G003400 Manihot esculenta HOM05D002230 ORTHO05D002441 3.8e-20 102.8 122 62.3
VMungo1127G0405 Vigna mungo HOM05D002230 ORTHO05D002441 3.8e-20 102.8 78 70.5
Phvul.011G051900 Phaseolus vulgaris HOM05D002230 ORTHO05D002441 5.0e-20 102.4 120 66.7
Nitab4.5_0005729g0040 Nicotiana tabacum HOM05D002230 ORTHO05D002441 1.1e-19 101.3 75 68.0
Nitab4.5_0009733g0020 Nicotiana tabacum HOM05D002230 ORTHO05D002441 1.1e-19 101.3 75 68.0
PGSC0003DMG403019442 Solanum tuberosum HOM05D002230 ORTHO05D002441 1.1e-19 101.3 119 72.3
ATR0317G080 Amborella trichopoda HOM05D002230 ORTHO05D002441 1.9e-19 100.5 135 48.1
Lalb_Chr01g0003061 Lupinus albus HOM05D002230 ORTHO05D002441 2.5e-19 100.1 129 46.5
Ah.04g150630 Amaranthus hybridus HOM05D002230 ORTHO05D002441 4.2e-19 99.4 125 49.6
FAN07G1373 Fragaria x ananassa HOM05D002230 ORTHO05D002441 4.2e-19 99.4 120 71.7
FAN17G0610 Fragaria x ananassa HOM05D002230 ORTHO05D002441 5.5e-19 99.0 75 69.3
Glyma.11G125100 Glycine max HOM05D002230 ORTHO05D002441 7.2e-19 98.6 120 61.7
Glyma.12G049700 Glycine max HOM05D002230 ORTHO05D002441 7.2e-19 98.6 78 69.2
unitig_748.g7990 Utricularia gibba HOM05D002230 ORTHO05D002441 1.2e-18 97.8 75 68.0
FvH4_4g10660 Fragaria vesca HOM05D002230 ORTHO05D002441 3.6e-18 96.3 120 70.8
FAN12G3082 Fragaria x ananassa HOM05D002230 ORTHO05D002441 3.6e-18 96.3 120 70.8
FAN12G3273 Fragaria x ananassa HOM05D002230 ORTHO05D002441 3.6e-18 96.3 120 70.8
Psat7g208680 Pisum sativum HOM05D002230 ORTHO05D002441 3.6e-18 96.3 120 60.8
Sc13g0000880 Simmondsia chinensis HOM05D002230 ORTHO05D002441 3.6e-18 96.3 75 70.7
THA.LOC104815521 Tarenaya hassleriana HOM05D002230 ORTHO05D002441 3.6e-18 96.3 100 53.0
SEGI_31495 Sequoiadendron giganteum HOM05D002230 ORTHO05D002441 4.7e-18 95.9 128 46.1
EL10Ac3g07289 Beta vulgaris HOM05D002230 ORTHO05D002441 1.0e-17 94.7 75 69.3
AagrBONN_evm.TU.Sc2ySwM_369.529 Anthoceros agrestis HOM05D002230 ORTHO05D002441 5.2e-17 92.4 128 43.8
CAN.G134.124 Capsicum annuum HOM05D002230 ORTHO05D002441 6.7e-17 92.0 67 67.2
CDE04G3562 Ceratophyllum demersum HOM05D002230 ORTHO05D002441 6.7e-17 92.0 79 67.1
Ca_20807_v3 Cicer arietinum L. HOM05D002230 ORTHO05D002441 8.8e-17 91.7 121 57.9
Lj1g0018031 Lotus japonicus HOM05D002230 ORTHO05D002441 1.1e-16 91.3 78 61.5
Lj3g0013974 Lotus japonicus HOM05D002230 ORTHO05D002441 1.1e-16 91.3 78 61.5
Rhsim05G0118800 Rhododendron simsii HOM05D009613 ORTHO05D012253 2.6e-16 90.1 58 65.5
Potri.017G017700 Populus trichocarpa HOM05D002230 ORTHO05D002441 3.3e-16 89.7 122 68.0
TPR.G34218 Trifolium pratense HOM05D002230 ORTHO05D002441 3.3e-16 89.7 78 64.1
Hund16448 Selenicereus undatus HOM05D002230 ORTHO05D002441 7.4e-16 88.6 69 68.1
Thhalv10006612m.g Eutrema salsugineum HOM05D002230 ORTHO05D002441 9.7e-16 88.2 75 61.3
Thhalv10027216m.g Eutrema salsugineum HOM05D002230 ORTHO05D002441 9.7e-16 88.2 75 58.7
Lsat_1_v5_gn_6_31421 Lactuca sativa HOM05D002230 ORTHO05D002441 9.7e-16 88.2 119 50.4
Medtr4g068150 Medicago truncatula HOM05D002230 ORTHO05D002441 1.3e-15 87.8 120 46.7
A10p05300 Brassica napus HOM05D002230 ORTHO05D002441 3.7e-15 86.3 75 60.0
BraA10t42795Z Brassica rapa HOM05D002230 ORTHO05D002441 3.7e-15 86.3 75 60.0
BolC5t29262H Brassica oleracea HOM05D002230 ORTHO05D002441 4.8e-15 85.9 75 60.0
BcaC05g24645 Brassica carinata HOM05D002230 ORTHO05D002441 6.3e-15 85.5 75 60.0
C05p04900 Brassica napus HOM05D002230 ORTHO05D002441 6.3e-15 85.5 75 60.0
Mapoly0040s0120 Marchantia polymorpha HOM05D002230 ORTHO05D002441 8.2e-15 85.1 72 62.5
Sp1g05450 Schrenkiella parvula HOM05D002230 ORTHO05D002441 8.2e-15 85.1 75 58.7
AT1G06720 Arabidopsis thaliana HOM05D002230 ORTHO05D002441 1.1e-14 84.7 72 58.3
Aqoxy1G01987 Aquilegia oxysepala HOM05D002230 ORTHO05D002441 1.8e-14 84.0 74 58.1
BraA09t42020Z Brassica rapa HOM05D002230 ORTHO05D002441 2.4e-14 83.6 127 43.3
Pp3c13_14960 Physcomitrium patens HOM05D002230 ORTHO05D002441 2.4e-14 83.6 76 57.9
C08p51050 Brassica napus HOM05D002230 ORTHO05D002441 9.1e-14 81.6 127 43.3
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 9.1e-14 81.6 102 55.9
SGA_v2.0_scaffold105G30315 Striga asiatica HOM05D002230 ORTHO05D051377 1.2e-13 81.3 57 70.2
BolC8t52632H Brassica oleracea HOM05D002230 ORTHO05D002441 2.6e-13 80.1 127 42.5
HanXRQChr14g0454041 Helianthus annuus HOM05D002230 ORTHO05D002441 2.6e-13 80.1 68 60.3
AL1G16730 Arabidopsis lyrata HOM05D002230 ORTHO05D002441 3.5e-13 79.7 75 54.7
A09p66820 Brassica napus HOM05D002230 ORTHO05D002441 3.5e-13 79.7 127 42.5
AUR62018398 Chenopodium quinoa HOM05D002230 ORTHO05D002441 4.5e-13 79.3 120 44.2
ECA233G0320 Erigeron canadensis HOM05D002230 ORTHO05D002441 5.9e-13 79.0 67 58.2
Sp7g16520 Schrenkiella parvula HOM05D002230 ORTHO05D002441 5.9e-13 79.0 75 57.3
vmacro16092 Vaccinium macrocarpon HOM05D001028 ORTHO05D000827 5.9e-13 79.0 110 37.3
Os03g0333100 Oryza sativa ssp. japonica HOM05D002230 ORTHO05D002441 7.7e-13 78.6 75 52.0
SMO358G0014 Selaginella moellendorffii HOM05D002230 ORTHO05D002441 1.0e-12 78.2 73 57.5
Cre10.g445600 Chlamydomonas reinhardtii HOM05D002230 ORTHO05D002441 1.3e-12 77.8 72 56.9
Carub.0001s0605 Capsella rubella HOM05D002230 ORTHO05D002441 1.7e-12 77.4 69 55.1
arahy.Tifrunner.gnm1.ann1.XT66D5 Arachis hypogaea HOM05D002230 ORTHO05D002441 3.8e-12 76.3 163 32.5
Zm00001eb015920 Zea mays HOM05D002230 ORTHO05D002441 3.8e-12 76.3 74 54.1
RcHm_v2.0_Chr2g0114561 Rosa chinensis HOM05D002230 ORTHO05D002441 5.0e-12 75.9 67 61.2
AUR62021045 Chenopodium quinoa HOM05D002230 ORTHO05D002441 6.5e-12 75.5 67 61.2
ECA236G3424 Erigeron canadensis HOM05D002230 ORTHO05D002441 6.5e-12 75.5 118 48.3
RhsimUnG0042400 Rhododendron simsii HOM05D009613 ORTHO05D012253 1.5e-11 74.3 36 80.6
arahy.Tifrunner.gnm1.ann1.W5M1I0 Arachis hypogaea HOM05D002230 ORTHO05D002441 1.9e-11 73.9 163 31.9
PSO170G1574 Papaver somniferum HOM05D002230 ORTHO05D002441 3.2e-11 73.2 75 58.7
PSO782G1699 Papaver somniferum HOM05D002230 ORTHO05D002441 3.2e-11 73.2 75 58.7
SHI22050 Sapria himalayana HOM05D002230 ORTHO05D002441 2.3e-09 67.0 50 68.0
RhsimUnG0002500 Rhododendron simsii HOM05D015182 ORTHO05D010968 6.7e-09 65.5 70 45.7
CARHR006400 Cardamine hirsuta HOM05D002230 ORTHO05D002441 1.5e-08 64.3 75 48.0
PRCOL_00006812 Prasinoderma coloniale HOM05D002230 ORTHO05D002441 2.8e-07 60.1 75 46.7
MCO01G316 Micromonas commoda HOM05D002230 ORTHO05D002441 4.8e-07 59.3 76 46.1
Rhsim01G0084500 Rhododendron simsii HOM05D009613 ORTHO05D012253 1.4e-06 57.8 31 77.4
FAN12G0585 Fragaria x ananassa HOM05D002230 ORTHO05D002441 1.8e-06 57.4 75 45.3


User provided reference genes

Program Settings