Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 3.1e-161 571.6 270 100.0
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 9.9e-123 443.7 268 75.4
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.1e-118 430.3 267 75.3
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.9e-114 414.8 261 73.6
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.3e-111 406.8 265 69.4
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 5.6e-110 401.4 260 71.2
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 4.0e-108 395.2 266 68.8
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 7.6e-107 391.0 266 66.9
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.8e-101 372.5 262 64.1
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 9.0e-100 367.5 261 64.4
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.6e-99 365.9 266 60.9
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 7.6e-99 364.4 264 61.4
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.0e-98 364.0 268 59.7
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 2.9e-98 362.5 264 61.4
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.1e-97 360.5 264 62.1
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 5.5e-97 358.2 266 60.9
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 6.0e-96 354.8 266 60.5
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 5.7e-94 348.2 264 61.0
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.3e-93 347.1 264 58.3
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.3e-93 347.1 264 58.3
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 2.8e-93 345.9 261 59.4
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 6.2e-93 344.7 260 61.2
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.4e-92 343.6 261 59.0
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.4e-92 343.6 264 59.1
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 2.4e-92 342.8 261 59.8
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 4.1e-92 342.0 263 57.8
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.2e-91 340.5 260 61.5
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 5.8e-91 338.2 261 59.0
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 2.9e-90 335.9 258 62.0
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 5.0e-90 335.1 261 56.3
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.9e-89 333.2 260 60.0
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 7.1e-89 331.3 261 57.9
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 9.3e-89 330.9 268 58.6
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 2.7e-88 329.3 266 56.4
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.0e-87 327.4 264 55.7
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 3.9e-87 325.5 261 56.7
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 2.5e-86 322.8 265 56.2
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.6e-85 320.1 262 58.0
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.1e-84 317.4 265 55.5
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 2.4e-84 316.2 265 55.5
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.9e-84 314.7 316 48.1
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.2e-83 313.9 263 57.0
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.5e-83 313.5 266 54.5
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.0e-83 313.2 249 59.8
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 1.0e-82 310.8 247 57.9
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 5.0e-82 308.5 260 57.7
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 7.2e-81 304.7 261 55.6
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 7.9e-80 301.2 262 55.7
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 8.8e-79 297.7 267 54.7
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 3.3e-78 295.8 264 53.4
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 5.7e-78 295.0 273 53.1
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.2e-77 293.1 267 54.3
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.4e-76 290.4 246 54.1
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.8e-76 290.0 250 52.4
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 9.1e-76 287.7 268 55.6
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 9.1e-76 287.7 265 51.7
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 2.0e-75 286.6 268 49.6
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.6e-75 286.2 263 52.9
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 2.9e-74 282.7 261 49.8
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 3.8e-74 282.3 264 51.1
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 5.5e-73 278.5 273 50.9
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 1.5e-70 270.4 260 49.2
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.2e-69 266.5 239 53.6
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.7e-69 265.8 239 53.6
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 6.3e-69 265.0 239 53.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 3.1e-68 262.7 262 48.5
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 5.3e-68 261.9 221 53.4
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 9.1e-68 261.2 263 49.8
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 4.5e-67 258.8 262 50.4
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.9e-65 253.4 268 46.3
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.9e-65 253.4 263 48.7
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 6.1e-64 248.4 266 48.9
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.0e-63 245.7 260 50.0
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 2.6e-62 243.0 275 47.6
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 9.7e-62 241.1 267 45.7
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.3e-61 240.7 260 49.2
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.3e-61 240.7 264 47.0
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 1.1e-60 237.7 269 45.0
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.1e-60 237.7 244 45.9
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.1e-60 236.1 270 44.8
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 7.7e-59 231.5 267 44.6
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.7e-59 231.5 267 44.6
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 7.7e-59 231.5 268 47.0
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.2e-58 229.9 267 44.6
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.8e-58 229.2 267 44.6
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.1e-57 227.6 264 43.2
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 1.1e-57 227.6 268 46.6
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.9e-57 226.9 268 45.1
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 4.2e-57 225.7 241 51.5
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 4.2e-57 225.7 247 44.1
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 7.2e-57 224.9 260 43.1
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 2.7e-56 223.0 249 45.0
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.0e-55 221.1 273 44.0
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.4e-55 220.7 245 44.1
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.8e-55 220.3 251 44.6
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.2e-55 218.8 268 42.9
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 8.8e-55 218.0 250 44.8
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.0e-54 216.9 268 42.5
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 4.4e-54 215.7 247 43.7
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 7.5e-54 214.9 252 44.8
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 7.5e-54 214.9 192 56.8
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 9.8e-54 214.5 266 41.4
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 9.8e-54 214.5 266 41.4
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.3e-53 214.2 247 44.1
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.8e-53 213.0 250 44.0
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 3.7e-53 212.6 267 40.4
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 2.4e-52 209.9 255 42.7
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 3.1e-52 209.5 251 45.0
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.1e-52 209.1 267 39.7
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 4.1e-52 209.1 267 40.1
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 7.0e-52 208.4 250 42.4
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 9.1e-52 208.0 252 44.8
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 9.1e-52 208.0 245 42.9
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 2.0e-51 206.8 262 42.4
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 2.7e-51 206.5 251 44.2
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 2.7e-51 206.5 260 40.4
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.5e-51 206.1 251 43.4
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.5e-51 206.1 263 39.5
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 5.9e-51 205.3 253 43.9
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 1.3e-50 204.1 235 46.0
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.2e-50 203.4 137 65.0
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 5.0e-50 202.2 251 42.6
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.5e-49 200.7 192 53.6
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 3.6e-48 196.1 278 40.6
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.6e-48 196.1 270 41.1
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 4.7e-48 195.7 272 38.6
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.3e-47 193.4 155 56.8
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 2.2e-45 186.8 248 41.1
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 2.2e-45 186.8 248 41.1
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 3.1e-44 183.0 248 40.7
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 3.1e-44 183.0 248 40.7
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 3.1e-44 183.0 248 40.7
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 9.1e-44 181.4 193 50.8
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 5.0e-42 175.6 267 37.1
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.5e-41 174.1 203 44.3
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 4.2e-41 172.6 267 35.2
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 7.2e-41 171.8 242 39.3
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 2.1e-40 170.2 262 39.3
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 2.8e-40 169.9 252 38.5
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 6.1e-40 168.7 189 46.0
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 5.7e-38 162.2 270 35.9
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.7e-37 160.6 277 38.3
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 4.3e-33 146.0 182 40.7
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.8e-32 143.3 124 55.6
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 8.9e-31 138.3 259 34.0
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 2.0e-22 110.5 133 37.6
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.0e-18 98.2 121 42.1
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 3.0e-18 96.7 118 46.6
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 3.1e-15 86.7 123 39.0
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 1.2e-14 84.7 55 63.6
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 2.6e-14 83.6 112 37.5
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 1.7e-13 80.9 60 60.0
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 4.9e-13 79.3 111 43.2
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 3.0e-10 70.1 99 41.4
MCO05G023 Micromonas commoda HOM05D004162 ORTHO05D004543 3.3e-09 66.6 298 23.2
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 1.1e-07 61.6 99 39.4


User provided reference genes

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