Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 1.4e-167 592.8 288 100.0
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 3.2e-127 458.8 306 78.8
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.0e-69 267.7 323 53.6
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 1.0e-69 267.7 328 51.2
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.0e-61 241.1 287 51.6
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 2.0e-60 236.9 262 54.6
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 7.4e-60 235.0 248 55.2
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 7.7e-57 224.9 320 45.9
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.3e-51 207.6 299 47.2
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 5.3e-50 202.2 289 47.8
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 9.1e-50 201.4 309 45.0
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.7e-49 199.9 313 44.4
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 4.5e-49 199.1 303 45.9
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 3.8e-48 196.1 253 47.4
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 3.2e-47 193.0 182 54.9
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 3.6e-46 189.5 276 45.7
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 8.0e-46 188.3 280 43.9
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.5e-44 184.1 291 40.9
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 1.5e-44 184.1 295 41.4
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 2.0e-44 183.7 293 44.0
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.0e-44 183.7 326 42.3
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 5.7e-44 182.2 305 44.3
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 1.7e-43 180.6 292 43.5
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.7e-43 180.6 333 41.1
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 6.3e-43 178.7 321 40.2
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 1.4e-42 177.6 291 39.5
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 3.1e-42 176.4 230 47.8
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 4.1e-42 176.0 386 35.8
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.0e-41 173.7 196 48.5
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 4.5e-41 172.6 276 43.1
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 1.0e-40 171.4 290 40.3
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.3e-40 171.0 227 48.0
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 3.8e-40 169.5 247 42.9
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 5.0e-40 169.1 304 40.8
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 5.0e-40 169.1 281 42.3
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.0e-37 161.4 313 39.0
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 6.8e-37 158.7 293 39.6
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 5.7e-36 155.6 301 40.9
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 1.7e-35 154.1 305 39.3
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 1.8e-34 150.6 324 39.5
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 3.1e-34 149.8 325 36.0
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 9.2e-34 148.3 174 49.4
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 1.6e-33 147.5 305 38.4
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.6e-33 147.5 313 37.7
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 3.5e-33 146.4 300 39.0
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 2.3e-32 143.7 153 53.6
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 2.9e-32 143.3 274 36.5
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 5.0e-32 142.5 149 53.7
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 1.1e-31 141.4 272 38.2
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 2.5e-31 140.2 144 47.2
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 7.3e-31 138.7 151 49.0
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 1.2e-30 137.9 143 48.3
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 1.6e-30 137.5 235 40.9
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.6e-30 137.5 147 50.3
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 1.6e-30 137.5 149 51.7
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 6.1e-30 135.6 141 48.2
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 8.0e-30 135.2 215 40.5
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 8.0e-30 135.2 156 47.4
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 8.0e-30 135.2 134 53.0
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 2.3e-29 133.7 173 42.8
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 3.0e-29 133.3 146 45.9
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 6.8e-29 132.1 270 37.0
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 8.9e-29 131.7 142 48.6
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 1.2e-28 131.3 146 43.8
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 1.2e-28 131.3 154 45.5
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 2.0e-28 130.6 157 45.2
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 2.6e-28 130.2 279 36.6
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 7.5e-28 128.6 274 35.8
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 9.8e-28 128.3 164 43.9
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 1.3e-27 127.9 196 41.8
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 2.2e-27 127.1 145 45.5
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 2.9e-27 126.7 155 45.2
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 2.9e-27 126.7 161 42.2
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 4.9e-27 125.9 136 47.1
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 4.9e-27 125.9 156 44.2
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 4.9e-27 125.9 155 45.2
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 4.9e-27 125.9 133 50.4
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 1.1e-26 124.8 152 45.4
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 4.1e-26 122.9 265 38.9
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 5.4e-26 122.5 332 31.9
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 9.2e-26 121.7 146 42.5
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 2.7e-25 120.2 162 41.4
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 2.7e-25 120.2 271 37.6
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 3.5e-25 119.8 137 45.3
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 4.6e-25 119.4 313 31.3
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 4.6e-25 119.4 271 36.5
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 5.9e-25 119.0 162 40.7
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 5.9e-25 119.0 142 43.0
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 7.8e-25 118.6 147 46.3
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 7.8e-25 118.6 165 41.2
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 7.8e-25 118.6 165 41.2
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 7.8e-25 118.6 147 44.2
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 1.7e-24 117.5 144 45.8
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 3.0e-24 116.7 293 34.8
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 6.6e-24 115.5 151 43.0
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.5e-23 114.4 158 41.8
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 3.3e-23 113.2 298 33.2
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 3.3e-23 113.2 174 42.0
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 4.3e-23 112.8 172 41.3
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 2.8e-22 110.2 137 41.6
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 3.6e-22 109.8 125 51.2
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 1.8e-21 107.5 148 41.9
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 4.0e-21 106.3 323 29.4
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 3.4e-20 103.2 299 32.4
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 5.8e-20 102.4 158 39.9
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 1.7e-19 100.9 173 37.0
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 2.2e-19 100.5 140 42.1
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 3.7e-19 99.8 123 47.2
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 8.3e-19 98.6 270 33.7
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 2.4e-18 97.1 294 30.6
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 3.2e-18 96.7 121 43.8
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 2.7e-17 93.6 150 37.3
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 1.3e-16 91.3 207 34.8
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 3.0e-16 90.1 135 37.8
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 3.9e-16 89.7 160 36.2
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 5.0e-16 89.4 151 37.1
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 8.6e-16 88.6 123 37.4
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 1.5e-15 87.8 191 30.9
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 3.3e-15 86.7 127 38.6
Prupe.2G102500 Prunus persica HOM05D005220 ORTHO05D006082 9.5e-15 85.1 129 40.3
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 1.2e-14 84.7 172 33.1
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 1.6e-14 84.3 161 36.0
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.6e-14 84.3 160 35.0
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.1e-14 84.0 160 35.0
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.8e-14 83.6 160 35.0
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 2.8e-14 83.6 140 33.6
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.6e-14 83.2 142 35.2
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 4.7e-14 82.8 141 32.6
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 8.1e-14 82.0 56 60.7
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.6e-12 77.0 127 36.2
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 4.4e-12 76.3 287 26.8
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 3.2e-10 70.1 81 46.9
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 9.2e-10 68.6 126 31.7
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.2e-09 68.2 119 30.3
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 1.6e-09 67.8 123 28.5
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.0e-08 65.1 238 25.2
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.3e-08 64.7 123 30.1
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 1.3e-08 64.7 130 30.0
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 1.3e-08 64.7 136 30.9
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 1.3e-08 64.7 136 30.9
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.3e-08 64.7 134 29.1
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.3e-08 64.7 200 26.0
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 1.7e-08 64.3 165 29.1
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 1.7e-08 64.3 222 25.2
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.7e-08 64.3 51 49.0
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 2.3e-08 63.9 169 30.2
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.0e-08 63.5 134 31.3
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 3.0e-08 63.5 217 22.1
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 3.9e-08 63.2 230 26.5
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 3.9e-08 63.2 126 33.3
ECA232G0957 Erigeron canadensis HOM05D005220 ORTHO05D006082 3.9e-08 63.2 136 26.5
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 3.9e-08 63.2 138 31.2
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.9e-08 63.2 157 27.4
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 5.1e-08 62.8 231 26.4
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 5.1e-08 62.8 129 29.5
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 8.6e-08 62.0 127 28.3
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 1.5e-07 61.2 123 30.9
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 1.9e-07 60.8 175 24.6
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 2.5e-07 60.5 234 24.4
THA.LOC104818515 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.5e-07 60.5 112 33.9
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 3.3e-07 60.1 149 26.8
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 4.3e-07 59.7 226 23.9
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 5.6e-07 59.3 126 27.0
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 5.6e-07 59.3 155 25.2
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 5.6e-07 59.3 180 26.7
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 9.5e-07 58.5 123 27.6
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 9.5e-07 58.5 245 25.7
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.2e-06 58.2 186 25.8
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 1.2e-06 58.2 245 24.9
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.6e-06 57.8 215 24.7
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.6e-06 57.8 162 27.2
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 2.1e-06 57.4 295 25.1
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 2.1e-06 57.4 204 24.0
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 2.1e-06 57.4 154 24.7
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.8e-06 57.0 192 26.0
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 2.8e-06 57.0 189 25.9
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 3.6e-06 56.6 188 28.7
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.6e-06 56.6 305 25.6
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.6e-06 56.6 171 24.0
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 3.6e-06 56.6 237 25.7
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 4.7e-06 56.2 178 24.7
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 6.2e-06 55.8 254 24.8
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 6.2e-06 55.8 185 22.7
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 8.1e-06 55.5 185 22.7


User provided reference genes

Program Settings