Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 0.0e+00 1719.5 919 100.0
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 0.0e+00 1486.1 920 87.8
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1222.2 939 72.3
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1143.6 931 69.0
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1137.9 931 68.6
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.3e-312 1074.7 915 69.8
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 3.4e-308 1061.6 895 65.6
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.0e-280 970.3 949 60.9
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 9.1e-277 957.2 948 61.6
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 6.3e-270 934.5 952 60.1
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.2e-267 926.0 940 58.5
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.9e-264 915.2 953 58.4
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 8.8e-264 914.1 1011 55.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.5e-263 913.3 948 57.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.6e-263 912.5 968 55.1
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.1e-261 905.6 951 57.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 5.3e-261 904.8 938 58.1
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.6e-260 903.3 954 57.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.9e-259 899.0 942 55.7
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 9.4e-258 894.0 945 56.2
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.7e-256 887.9 952 57.1
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-255 886.3 783 65.3
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.6e-255 885.9 952 57.0
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.3e-254 881.3 952 56.8
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 4.1e-253 878.6 951 56.2
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.7e-252 875.9 1004 52.9
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 3.2e-250 869.0 951 57.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.4e-250 867.5 923 57.7
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.8e-247 857.4 951 56.2
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.7e-246 856.7 951 56.0
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.3e-243 847.0 903 57.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 2.9e-243 845.9 948 54.0
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 3.8e-243 845.5 941 54.2
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-242 843.6 949 55.5
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.5e-242 843.6 945 55.2
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-242 843.2 940 55.6
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.1e-241 839.7 939 55.5
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.1e-241 839.7 942 54.7
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 3.4e-239 832.4 975 55.1
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 5.7e-239 831.6 956 52.3
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.7e-238 828.9 941 53.6
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 8.3e-238 827.8 642 71.7
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-235 818.9 956 53.5
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 7.3e-234 814.7 958 53.2
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.6e-233 813.5 947 53.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.8e-232 810.1 908 54.4
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.2e-231 807.4 982 52.6
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.5e-231 807.0 942 54.0
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.3e-230 803.9 939 51.7
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.6e-228 795.4 953 52.8
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 3.0e-227 792.7 942 51.1
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.3e-226 788.9 900 53.1
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.2e-224 781.9 850 54.6
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.9e-224 781.2 852 54.9
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.2e-223 780.8 917 53.9
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.9e-222 776.2 946 51.7
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.1e-221 774.2 915 54.8
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.0e-220 770.0 945 53.4
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.7e-220 769.6 942 50.3
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 3.5e-220 769.2 895 52.5
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 4.7e-217 758.8 874 52.2
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-216 757.7 916 50.9
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 4.0e-216 755.7 946 52.1
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 8.9e-216 754.6 914 50.9
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.9e-213 746.9 968 49.6
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.5e-210 737.3 891 51.2
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.9e-210 736.9 946 49.0
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 7.3e-210 734.9 928 51.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.1e-209 733.4 921 49.4
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 2.8e-209 733.0 1009 48.0
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 6.2e-209 731.9 955 49.5
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.8e-208 730.3 941 49.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 5.2e-208 728.8 890 50.8
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.5e-207 727.2 912 50.2
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 4.4e-207 725.7 882 53.1
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 9.9e-207 724.5 921 49.9
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.9e-206 723.0 875 51.8
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.9e-206 723.0 916 50.4
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 8.4e-206 721.5 916 50.1
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.6e-204 717.2 846 50.7
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.5e-204 716.1 912 51.3
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.0e-203 714.5 933 50.2
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.3e-202 708.4 845 50.4
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.4e-199 699.5 962 48.8
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 4.4e-199 699.1 891 49.6
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 9.3e-197 691.4 931 48.3
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 7.3e-194 681.8 950 48.6
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.8e-193 679.9 921 49.2
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.1e-193 678.3 941 48.0
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-189 667.9 926 46.8
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 9.3e-189 664.8 980 45.2
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.5e-186 657.5 947 47.7
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.9e-186 657.1 930 46.6
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 2.5e-186 656.8 902 47.6
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.7e-185 652.9 922 49.3
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.4e-184 651.0 607 63.1
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.7e-182 644.0 885 47.2
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.9e-182 642.5 693 56.9
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.2e-181 639.8 894 47.8
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.1e-180 637.1 664 54.7
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 7.9e-180 635.2 887 47.0
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 4.3e-178 629.4 900 47.1
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 4.8e-177 625.9 928 46.7
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 7.6e-175 618.6 862 49.2
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 8.7e-171 605.1 947 44.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.4e-168 597.8 931 44.6
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.8e-166 589.7 917 45.3
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 6.5e-166 589.0 871 47.4
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.3e-163 580.5 872 44.4
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.3e-161 574.7 858 46.5
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.7e-161 574.3 856 46.4
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 4.8e-161 572.8 942 43.2
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.0e-158 565.1 879 44.4
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.7e-158 564.3 879 44.1
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 7.2e-157 558.9 863 44.0
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 6.1e-156 555.8 947 41.5
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.4e-155 554.7 697 49.1
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.8e-155 554.3 869 46.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-148 531.6 944 42.4
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.2e-148 531.6 944 42.4
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.6e-148 531.2 955 42.3
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.1e-148 530.8 940 42.0
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 2.1e-148 530.8 938 42.6
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.1e-148 530.8 943 42.7
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.7e-148 530.4 959 42.0
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 6.1e-148 529.3 940 41.7
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 3.0e-147 526.9 938 42.6
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.0e-146 524.2 940 41.7
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.7e-145 520.0 924 42.0
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.8e-144 517.7 920 42.3
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 5.9e-143 512.7 899 44.2
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.5e-141 507.3 687 49.8
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 2.1e-140 504.2 920 41.1
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 3.1e-136 490.3 847 41.1
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.0e-134 485.3 842 42.4
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 9.4e-133 478.8 505 58.0
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.5e-125 454.9 883 39.4
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.2e-125 453.4 881 38.8
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.5e-125 453.0 631 49.8
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.5e-122 444.9 471 53.7
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.6e-122 444.1 947 37.8
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.7e-121 440.3 849 42.9
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 8.3e-113 412.5 848 40.3
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.1e-104 383.6 334 67.1
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 7.3e-101 372.9 635 43.9
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 3.6e-100 370.5 537 44.7
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.4e-98 363.6 411 54.3
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.1e-91 342.4 1053 34.9
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.5e-90 338.6 932 33.2
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.4e-81 306.2 813 33.0
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.9e-80 305.1 395 54.9
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.7e-78 298.5 756 35.8
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-77 295.4 823 33.3
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.6e-74 284.6 370 47.8
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 3.9e-70 270.8 292 54.5
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.5e-69 268.9 959 29.3
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.5e-61 242.3 410 47.8
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 3.3e-61 241.1 750 34.3
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 7.4e-61 240.0 355 44.5
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 5.3e-51 207.2 274 45.6
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 4.2e-48 197.6 229 51.5
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.7e-47 194.9 504 35.9
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.8e-46 192.2 276 43.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.3e-44 186.0 282 48.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.5e-42 179.1 194 51.5
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 5.0e-41 174.1 343 32.4
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 4.2e-40 171.0 111 74.8
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-31 142.1 266 45.9
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.8e-28 131.0 117 57.3
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 4.8e-28 131.0 129 57.4
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 2.6e-26 125.2 151 48.3
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.2e-25 122.1 142 48.6
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 9.7e-21 106.7 90 72.2
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.5e-18 98.2 158 39.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.7e-18 97.1 118 48.3
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.1e-16 93.2 80 53.8
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 3.2e-16 91.7 114 48.2
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.3e-12 79.7 88 47.7
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.8e-12 78.6 99 47.5
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.4e-11 75.5 48 68.8
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 3.3e-08 65.1 47 53.2
Hund13661 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.0e-06 58.5 71 57.7


User provided reference genes

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