Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.0e-177 623.6 309 100.0
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.0e-83 314.3 246 68.7
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.0e-83 312.8 246 68.3
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.7e-76 288.9 264 62.9
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.4e-74 282.3 240 64.2
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.4e-72 277.3 243 65.8
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.1e-72 276.2 259 60.6
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 8.5e-70 268.1 240 61.7
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 6.1e-68 261.9 243 58.4
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 6.7e-67 258.5 243 58.0
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 1.1e-64 251.1 262 52.7
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 2.4e-64 250.0 241 55.2
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 9.1e-64 248.1 265 53.2
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 9.1e-64 248.1 242 57.0
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.5e-63 245.7 243 59.3
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-62 244.6 242 57.4
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 2.2e-62 243.4 263 52.9
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 7.2e-61 238.4 262 52.7
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 9.4e-61 238.0 263 51.7
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 1.2e-60 237.7 241 53.9
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.6e-60 237.3 264 51.9
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 2.1e-60 236.9 263 52.1
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.7e-60 236.5 196 68.9
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 4.7e-60 235.7 264 51.5
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 1.0e-59 234.6 244 52.5
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.0e-59 234.6 265 51.3
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 5.2e-59 232.3 264 50.4
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 1.2e-58 231.1 265 50.9
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-58 230.7 261 53.6
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 2.0e-58 230.3 264 50.8
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 2.0e-58 230.3 253 53.8
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.4e-58 229.6 240 52.5
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.4e-58 229.6 261 51.0
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 7.5e-58 228.4 241 50.2
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.7e-57 227.3 263 50.2
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.7e-57 227.3 263 50.2
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 3.7e-57 226.1 237 54.0
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.3e-57 224.9 262 50.0
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 8.3e-57 224.9 241 50.6
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.1e-56 224.6 240 51.7
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.4e-56 224.2 240 51.2
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.4e-56 223.4 240 54.6
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.4e-56 223.4 240 54.6
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 4.1e-56 222.6 263 49.8
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 5.4e-56 222.2 263 48.3
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 9.1e-56 221.5 229 56.3
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.6e-55 220.7 224 54.9
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-55 220.3 244 53.7
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 4.5e-55 219.2 238 52.5
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 7.7e-55 218.4 243 51.0
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 1.5e-53 214.2 241 49.0
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 3.2e-53 213.0 263 46.4
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.2e-53 213.0 242 52.5
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.2e-53 213.0 242 52.5
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 2.7e-52 209.9 243 50.2
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 3.6e-52 209.5 257 47.5
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.0e-51 208.0 251 48.2
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 1.0e-51 208.0 265 45.3
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 3.0e-51 206.5 238 50.0
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.0e-51 206.1 258 50.8
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 5.2e-51 205.7 243 45.3
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.8e-51 204.9 238 52.1
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 2.0e-50 203.8 216 54.2
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 4.4e-50 202.6 265 44.2
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 7.5e-50 201.8 265 43.8
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.7e-49 200.7 249 47.0
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 8.3e-49 198.4 237 47.3
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 8.3e-49 198.4 241 46.9
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 3.1e-48 196.4 241 47.7
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.5e-47 193.0 244 51.2
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 4.5e-47 192.6 237 46.8
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 5.9e-47 192.2 241 46.9
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.3e-46 191.0 243 45.7
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 3.8e-46 189.5 243 46.1
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 3.8e-46 189.5 241 45.6
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 3.3e-45 186.4 256 43.4
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 4.3e-45 186.0 243 45.7
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.6e-45 185.7 241 45.2
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 7.3e-45 185.3 241 47.3
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 9.5e-45 184.9 241 45.2
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 9.5e-45 184.9 241 45.6
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-44 184.1 263 43.3
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 2.1e-44 183.7 180 53.9
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 4.7e-44 182.6 243 47.3
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 8.0e-44 181.8 241 44.8
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-43 181.4 254 48.0
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.4e-43 181.0 235 46.0
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.8e-43 180.6 177 55.4
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.3e-43 180.3 219 47.0
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.5e-42 177.6 242 43.0
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 4.4e-42 176.0 241 41.1
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 7.5e-42 175.3 245 43.7
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 7.5e-42 175.3 238 41.2
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 4.9e-41 172.6 244 43.0
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 4.9e-41 172.6 246 43.5
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 1.8e-40 170.6 253 41.9
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 2.4e-40 170.2 225 44.9
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 3.2e-40 169.9 264 39.8
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 4.1e-40 169.5 240 43.3
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 5.4e-40 169.1 243 43.2
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 5.4e-40 169.1 251 40.2
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 9.2e-40 168.3 194 50.0
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 2.0e-39 167.2 243 42.0
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 2.0e-39 167.2 243 42.0
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 3.5e-39 166.4 242 39.3
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.1e-37 161.4 239 41.0
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 2.5e-37 160.2 246 41.1
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 4.3e-37 159.5 243 40.7
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 7.3e-37 158.7 233 41.6
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.2e-36 157.9 244 41.0
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.2e-36 157.9 218 44.0
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 1.2e-36 157.9 241 38.6
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 3.1e-35 153.3 243 41.6
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.2e-35 152.5 269 36.8
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 1.5e-34 151.0 248 39.9
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 3.4e-34 149.8 242 38.4
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.8e-34 149.1 192 44.8
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.9e-33 146.0 263 37.3
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 6.4e-33 145.6 196 45.9
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 8.3e-33 145.2 261 36.4
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-32 144.4 263 36.9
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.4e-32 142.5 169 49.7
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 9.2e-32 141.7 268 35.1
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.2e-31 141.4 244 38.1
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.3e-30 137.1 156 55.1
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.9e-30 136.3 237 38.0
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.3e-29 133.3 198 44.4
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.2e-27 125.9 232 37.1
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 8.9e-27 125.2 140 50.0
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-26 124.8 151 47.7
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.9e-25 120.2 125 52.8
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 1.1e-24 118.2 149 43.6
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.4e-24 117.1 166 42.8
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.2e-20 104.8 133 49.6
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.8e-20 103.6 87 62.1
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 3.6e-20 103.2 126 45.2
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.4e-19 101.3 137 46.7
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 1.4e-19 101.3 100 54.0
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 3.8e-17 93.2 240 30.4
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 3.2e-16 90.1 71 66.2
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 3.5e-15 86.7 227 29.5
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 2.1e-12 77.4 96 46.9
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.8e-11 74.3 62 62.9
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 9.9e-10 68.6 75 48.0
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.4e-09 65.5 77 49.4
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 8.4e-09 65.5 79 46.8
ECA246G0900 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.7e-06 57.8 56 46.4


User provided reference genes

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