Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.7e-250 867.8 467 100.0
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-175 620.2 464 78.0
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.0e-164 580.9 473 72.5
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 6.4e-162 574.7 472 67.2
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.9e-161 573.2 472 66.9
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.4e-150 534.6 474 68.4
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-148 530.0 469 69.7
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-146 523.9 494 64.6
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.0e-143 512.7 479 63.9
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.3e-142 509.2 485 59.2
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.3e-142 508.8 474 66.0
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 6.5e-138 495.0 472 64.8
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 6.5e-138 495.0 472 64.8
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.2e-130 469.9 476 63.9
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-128 463.8 412 65.3
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.5e-126 456.4 470 58.5
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 2.0e-123 446.8 475 52.8
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.4e-121 438.0 472 61.7
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 6.1e-120 435.3 478 51.5
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 2.0e-118 430.3 480 56.2
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 4.8e-117 425.6 479 52.8
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 9.1e-116 421.4 488 50.0
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.5e-115 420.6 478 54.8
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 2.2e-114 416.8 480 49.6
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.9e-114 416.4 486 48.8
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.8e-114 416.0 486 48.6
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 8.5e-114 414.8 478 54.2
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.1e-113 414.5 481 49.1
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 2.5e-113 413.3 484 49.0
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.2e-113 412.9 471 50.1
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 9.4e-113 411.4 478 53.8
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 8.0e-112 408.3 486 49.0
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.4e-111 407.5 486 48.1
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.8e-111 404.8 475 48.8
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 1.1e-110 404.4 471 49.7
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.0e-110 403.7 491 51.7
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 2.6e-110 403.3 472 49.4
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 5.7e-110 402.1 471 49.3
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 9.7e-110 401.4 473 55.0
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 1.3e-109 401.0 412 55.1
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 3.7e-109 399.4 478 47.3
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.8e-109 399.1 483 52.2
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.4e-108 397.5 479 48.0
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 7.0e-108 395.2 469 49.3
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 1.0e-106 391.3 484 47.5
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 1.3e-106 391.0 472 48.5
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.3e-106 391.0 487 47.2
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.7e-106 390.6 480 47.3
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.8e-106 389.4 354 68.1
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 3.2e-105 386.3 496 47.8
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 3.2e-105 386.3 496 47.8
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.5e-105 385.6 476 50.0
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 5.5e-105 385.6 478 49.2
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.2e-105 385.2 476 50.2
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 3.6e-104 382.9 482 45.2
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 4.7e-104 382.5 480 46.2
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 6.1e-104 382.1 476 43.9
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 8.0e-104 381.7 476 50.0
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 6.8e-103 378.6 471 46.3
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 4.4e-102 375.9 472 47.5
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 4.8e-101 372.5 479 45.9
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 2.4e-100 370.2 484 47.1
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 5.4e-100 369.0 488 45.3
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 9.1e-100 368.2 476 42.6
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 9.1e-100 368.2 484 49.4
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 9.1e-100 368.2 477 43.2
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 4.5e-99 365.9 477 42.8
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 7.7e-99 365.2 485 49.1
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 1.2e-96 357.8 488 45.3
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 3.6e-96 356.3 484 48.6
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 4.7e-96 355.9 484 45.9
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.1e-96 355.5 409 49.9
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.8e-95 354.0 397 50.1
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 8.8e-95 351.7 479 48.2
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.5e-94 350.9 464 44.2
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 2.2e-93 347.1 473 48.8
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.2e-93 347.1 479 46.8
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 4.9e-93 345.9 492 45.9
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 4.9e-93 345.9 480 43.8
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.1e-92 344.7 339 57.5
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 3.1e-92 343.2 477 48.4
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.1e-92 342.8 291 70.1
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 5.4e-92 342.4 474 43.7
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 9.1e-92 341.7 476 49.8
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.6e-91 340.9 327 56.6
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 6.6e-90 335.5 474 48.9
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 4.0e-87 326.2 476 42.4
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.2e-86 324.7 476 46.6
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.5e-86 324.3 481 41.4
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 3.4e-86 323.2 478 41.6
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 7.5e-86 322.0 479 43.8
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 2.2e-85 320.5 481 43.7
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.2e-84 316.6 475 47.6
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 4.1e-84 316.2 480 43.8
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 4.1e-84 316.2 480 43.8
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 9.2e-84 315.1 481 44.3
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.6e-83 312.8 359 48.2
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 4.6e-83 312.8 495 40.8
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.3e-82 311.2 466 47.2
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 2.9e-82 310.1 491 41.3
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.9e-82 310.1 472 41.5
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 8.6e-82 308.5 493 41.2
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 3.6e-80 303.1 486 39.9
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-79 301.2 476 46.4
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.9e-77 293.5 329 49.5
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.9e-77 293.5 477 44.7
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 8.3e-77 292.0 329 49.2
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 3.2e-76 290.0 406 44.8
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 5.4e-76 289.3 398 46.0
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 7.0e-76 288.9 497 38.2
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 3.0e-74 283.5 495 38.8
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 6.6e-74 282.3 294 51.0
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-73 281.2 259 60.6
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 2.1e-72 277.3 432 43.3
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 6.2e-72 275.8 475 41.9
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 1.1e-71 275.0 224 59.4
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 6.8e-71 272.3 471 39.1
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 1.2e-70 271.6 322 49.7
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 2.2e-69 267.3 506 35.8
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 2.9e-69 266.9 298 54.7
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 5.4e-68 262.7 500 37.0
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 1.5e-65 254.6 488 37.9
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 4.3e-65 253.1 480 41.5
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.1e-63 246.9 336 44.6
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 8.4e-61 238.8 276 56.2
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 8.4e-53 212.2 239 55.6
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.2e-52 209.9 256 49.2
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 7.1e-52 209.1 172 57.0
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 3.6e-48 196.8 295 42.7
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 1.5e-46 191.4 473 32.8
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 7.6e-38 162.5 317 37.9
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 9.3e-36 155.6 169 50.3
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.2e-35 155.2 156 54.5
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 7.4e-33 146.0 102 68.6
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-32 144.8 232 39.2
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.8e-32 144.1 273 37.0
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.0e-30 137.9 167 61.7
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 6.5e-29 132.9 196 45.4
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 1.9e-28 131.3 403 28.8
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.1e-26 123.2 167 54.5
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.3e-24 118.6 87 70.1
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 6.9e-23 112.8 125 48.0
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.2e-21 107.8 97 58.8
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.2e-21 107.8 207 36.2
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 3.0e-18 97.4 79 57.0
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.1e-18 96.7 72 69.4
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.7e-17 93.2 144 40.3
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 2.8e-16 90.9 148 35.1
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.9e-14 83.2 126 37.3
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 7.2e-12 76.3 220 27.3
Cfa011788 Carpinus fangiana HOM05D002125 ORTHO05D002105 2.7e-11 74.3 218 26.6
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 7.9e-11 72.8 220 27.3
CsaV3_6G018970 Cucumis sativus L. HOM05D002125 ORTHO05D002105 3.0e-10 70.9 220 27.3
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 1.1e-09 68.9 222 26.1
CANSAT54G1695 Cannabis sativa HOM05D002125 ORTHO05D002105 3.3e-09 67.4 218 25.2
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.7e-09 66.6 79 46.8
GSVIVG01030257001 Vitis vinifera HOM05D002125 ORTHO05D002105 7.4e-09 66.2 218 26.1
QL01p025894 Quercus lobata HOM05D002125 ORTHO05D002105 3.7e-08 63.9 218 25.7
TAR374G1076 Trochodendron aralioides HOM05D002503 ORTHO05D002810 6.3e-08 63.2 387 26.4
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.1e-07 60.5 82 39.0
Nn2g11037 Nelumbo nucifera HOM05D002125 ORTHO05D002105 5.3e-07 60.1 218 24.8
Ah.15g090380 Amaranthus hybridus HOM05D002125 ORTHO05D002105 6.9e-07 59.7 150 30.0
Eucgr.J01853 Eucalyptus grandis HOM05D002125 ORTHO05D002105 1.5e-06 58.5 167 31.7
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 2.0e-06 58.2 280 24.6
AUR62011479 Chenopodium quinoa HOM05D001219 ORTHO05D001017 2.6e-06 57.8 227 27.8
AUR62016292 Chenopodium quinoa HOM05D001219 ORTHO05D001017 2.6e-06 57.8 275 25.1
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 3.4e-06 57.4 280 24.6
SalBow5G5277 Salvia bowleyana HOM05D001905 ORTHO05D001820 3.4e-06 57.4 372 24.2
CAN.G48.42 Capsicum annuum HOM05D002503 ORTHO05D002810 4.5e-06 57.0 408 24.8
Glyma.14G200300 Glycine max HOM05D002125 ORTHO05D002105 4.5e-06 57.0 220 24.1
HanXRQChr12g0371751 Helianthus annuus HOM05D002813 ORTHO05D003203 5.9e-06 56.6 268 28.4
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 7.7e-06 56.2 360 24.4


User provided reference genes

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