Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 0.0e+00 1140.9 591 100.0
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.5e-173 612.5 429 79.3
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.3e-155 552.4 479 65.1
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.3e-154 550.8 479 64.9
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.0e-143 512.3 472 66.3
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.5e-143 511.9 495 63.6
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-139 500.0 479 63.9
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.9e-136 488.8 491 60.7
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.0e-132 476.5 478 61.5
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.7e-125 452.6 478 60.3
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.7e-125 452.6 478 60.3
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.7e-124 448.7 474 59.9
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.7e-124 448.7 481 61.3
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 9.1e-121 438.3 469 57.6
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 5.0e-119 432.6 483 54.0
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.7e-117 426.0 477 59.7
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 2.0e-115 420.6 481 52.8
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-114 417.9 309 73.1
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 4.5e-112 409.5 479 51.4
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.9e-112 409.1 474 56.5
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 5.0e-111 406.0 487 53.6
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.5e-111 405.2 467 55.7
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 5.5e-110 402.5 491 50.5
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 2.1e-109 400.6 485 51.5
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 2.3e-108 397.1 486 53.3
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 8.8e-108 395.2 450 55.1
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 8.8e-108 395.2 494 50.4
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.2e-106 390.6 488 49.0
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 4.8e-106 389.4 485 52.6
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 7.0e-105 385.6 493 50.5
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 1.2e-104 384.8 497 49.1
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 5.9e-104 382.5 484 51.9
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 1.7e-103 380.9 491 49.7
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 1.5e-102 377.9 472 49.2
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.9e-102 377.5 481 49.1
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 3.2e-102 376.7 475 50.3
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 9.4e-102 375.2 489 47.6
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 9.4e-102 375.2 476 50.4
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.2e-101 374.8 474 49.6
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.6e-101 374.4 490 48.0
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.1e-101 374.0 490 47.3
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 2.7e-101 373.6 489 49.5
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 4.7e-101 372.9 490 48.8
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 6.1e-101 372.5 484 48.3
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.3e-100 370.5 484 48.8
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.8e-100 368.6 490 47.8
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 4.4e-99 366.3 478 49.8
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 1.3e-98 364.8 484 47.1
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 3.7e-98 363.2 497 49.5
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 6.3e-98 362.5 475 47.8
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 4.1e-97 359.8 477 48.4
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.1e-97 359.8 501 47.3
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.1e-97 359.8 501 47.3
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 9.2e-97 358.6 485 47.8
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 5.9e-96 355.9 484 48.1
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 5.9e-96 355.9 483 48.4
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 1.0e-95 355.1 482 45.0
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 1.0e-95 355.1 479 50.3
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.8e-95 353.2 479 48.6
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.6e-95 352.4 479 48.9
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 1.9e-94 350.9 479 48.6
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.9e-94 350.9 361 60.1
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 2.5e-94 350.5 499 45.9
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 8.0e-93 345.5 481 47.2
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 5.2e-92 342.8 483 43.3
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 1.2e-91 341.7 483 43.3
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 1.2e-91 341.7 484 44.2
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 1.7e-90 337.8 488 48.0
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 3.7e-90 336.7 483 46.4
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.1e-89 335.1 462 47.2
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 1.4e-89 334.7 482 47.7
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.4e-89 334.0 314 60.2
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.4e-89 334.0 434 48.8
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.6e-88 329.7 488 46.1
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 4.3e-86 323.2 480 44.6
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.3e-86 323.2 297 64.6
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 5.6e-86 322.8 477 48.2
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 7.3e-86 322.4 493 42.4
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 3.1e-84 317.0 471 46.1
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 4.0e-84 316.6 489 45.0
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 5.2e-84 316.2 490 42.4
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 2.6e-83 313.9 481 44.9
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.3e-82 311.6 489 43.1
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 2.9e-82 310.5 490 43.5
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 6.4e-82 309.3 477 44.7
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 1.4e-81 308.1 475 46.9
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 3.2e-81 307.0 483 44.9
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.1e-81 306.6 481 43.7
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 5.4e-81 306.2 477 45.9
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 9.2e-81 305.4 302 54.6
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 6.0e-80 302.8 478 43.7
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 1.7e-79 301.2 498 41.8
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 3.0e-79 300.4 484 44.0
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 8.6e-79 298.9 406 47.0
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 9.5e-78 295.4 482 45.0
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 6.2e-77 292.7 487 43.3
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 6.2e-77 292.7 487 43.3
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-76 292.0 480 45.8
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 1.8e-76 291.2 499 41.9
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.1e-76 290.4 264 62.9
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 3.4e-75 287.0 501 41.1
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 9.8e-75 285.4 497 41.9
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 6.4e-74 282.7 502 41.6
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 3.2e-73 280.4 480 43.8
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 7.1e-73 279.3 338 48.2
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 4.6e-72 276.6 488 40.4
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 4.6e-72 276.6 337 48.1
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.0e-71 273.9 486 42.6
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 3.3e-70 270.4 474 43.9
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.3e-70 270.0 363 48.2
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 2.8e-69 267.3 481 39.1
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 1.4e-68 265.0 506 38.3
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 4.0e-68 263.5 506 36.6
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 4.4e-67 260.0 504 39.5
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 9.9e-67 258.8 439 43.3
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.3e-66 258.5 414 43.0
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 3.8e-66 256.9 505 39.6
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 1.4e-65 255.0 476 41.6
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 7.8e-64 249.2 490 37.3
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-63 248.8 339 46.6
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 3.0e-63 247.3 318 50.6
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 8.1e-61 239.2 317 49.5
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 4.2e-57 226.9 306 47.7
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.2e-56 225.3 314 48.7
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 5.1e-55 219.9 487 37.6
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.5e-46 191.8 243 50.2
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 1.5e-43 181.8 215 47.9
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.9e-42 176.8 281 44.1
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 7.1e-41 172.9 471 33.8
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 3.9e-39 167.2 297 42.8
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.9e-36 156.4 192 49.0
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.5e-33 146.7 168 58.3
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.3e-30 137.5 202 44.1
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.7e-30 136.7 237 40.1
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.1e-28 132.5 107 68.2
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.5e-27 127.1 167 50.9
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.9e-26 124.4 150 48.7
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.8e-26 124.0 150 51.3
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 3.2e-25 120.9 192 45.8
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.2e-25 120.6 161 49.1
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 9.3e-25 119.4 260 38.5
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 2.1e-24 118.2 413 29.1
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.7e-24 117.9 319 35.7
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 3.0e-23 114.4 150 43.3
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 1.4e-20 105.5 127 48.0
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.2e-19 102.4 88 63.6
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.1e-15 87.0 73 64.4
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-12 79.3 127 40.2
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 2.9e-10 71.2 280 25.0
Psat7g258720 Pisum sativum HOM05D001219 ORTHO05D001017 5.5e-09 67.0 368 25.5
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 7.2e-09 66.6 80 45.0
PGR142G0733 Punica granatum HOM05D003317 ORTHO05D003696 1.2e-08 65.9 283 25.8
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 1.6e-08 65.5 270 24.4
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 1.6e-08 65.5 277 27.4
Mapoly0061s0105 Marchantia polymorpha HOM05D043561 ORTHO05D038408 2.7e-08 64.7 248 25.8
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.3e-07 61.6 73 52.1
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 3.0e-07 61.2 290 25.5
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 5.2e-07 60.5 295 29.5
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 5.2e-07 60.5 276 29.0
Nn2g11037 Nelumbo nucifera HOM05D002125 ORTHO05D002105 6.7e-07 60.1 233 22.7
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 6.7e-07 60.1 269 26.8
TAR623G1068 Trochodendron aralioides HOM05D002125 ORTHO05D002105 6.7e-07 60.1 156 27.6
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 1.1e-06 59.3 340 24.7
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 1.1e-06 59.3 154 27.9
Psat3g012240 Pisum sativum HOM05D001219 ORTHO05D001017 2.6e-06 58.2 145 26.2
Nitab4.5_0028416g0010 Nicotiana tabacum HOM05D002813 ORTHO05D003203 4.4e-06 57.4 210 25.7
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 7.4e-06 56.6 286 27.3
Psat0s1674g0080 Pisum sativum HOM05D001219 ORTHO05D001017 7.4e-06 56.6 430 24.2
HPP92_004371 Vanilla planifolia HOM05D003317 ORTHO05D003696 7.4e-06 56.6 135 32.6
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 9.7e-06 56.2 277 27.8


User provided reference genes

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