Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.7e-227 792.3 417 100.0
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 4.7e-172 608.2 361 92.0
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 7.0e-152 541.2 359 81.9
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 8.0e-148 527.7 345 82.3
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 5.2e-147 525.0 345 81.2
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 2.0e-146 523.1 345 81.4
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 8.3e-145 517.7 344 81.1
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 8.3e-145 517.7 345 80.9
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.1e-144 517.3 345 79.7
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.9e-144 516.5 346 81.5
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.7e-143 512.7 345 80.3
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.3e-142 509.6 345 79.1
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 5.0e-142 508.4 345 79.7
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.9e-141 506.5 345 78.8
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 4.3e-141 505.4 335 80.9
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 5.6e-141 505.0 337 78.9
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.2e-140 503.8 319 87.1
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.2e-140 503.8 345 76.8
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.6e-140 503.4 345 78.6
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.6e-140 503.4 345 78.6
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 4.7e-140 501.9 335 80.3
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.7e-140 501.9 345 78.3
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.1e-139 500.7 345 78.6
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.8e-139 500.0 345 78.0
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.3e-139 499.6 345 78.0
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.3e-139 499.6 345 77.1
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.2e-139 498.4 345 76.8
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 8.9e-139 497.7 345 76.2
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.0e-138 496.5 345 78.3
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.6e-138 496.1 345 78.0
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 2.6e-138 496.1 345 77.1
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 4.4e-138 495.4 345 80.0
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.2e-137 493.0 345 75.4
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 3.7e-137 492.3 347 76.9
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 4.9e-137 491.9 345 75.7
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 3.2e-136 489.2 377 70.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 7.1e-136 488.0 345 76.8
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.2e-135 487.3 372 73.1
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.6e-135 486.9 340 77.9
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.1e-135 486.5 343 77.3
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.5e-135 485.7 340 75.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 6.0e-135 485.0 345 74.5
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.3e-134 483.8 335 77.9
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.3e-134 483.0 345 74.2
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 3.9e-134 482.3 342 76.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 6.6e-134 481.5 345 74.5
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.1e-133 480.7 343 77.0
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.5e-133 480.3 345 75.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.3e-133 479.2 345 73.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 6.2e-132 474.9 345 73.0
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.1e-131 472.6 345 73.6
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 5.2e-131 471.9 345 73.6
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.2e-130 470.7 345 74.2
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 7.6e-130 468.0 340 73.5
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.9e-129 466.1 345 73.3
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 8.4e-129 464.5 345 73.3
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.0e-126 456.1 345 72.5
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.9e-125 453.4 345 71.9
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.3e-125 452.2 315 76.2
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 2.8e-124 449.5 341 72.1
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 6.2e-124 448.4 319 75.9
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.1e-123 447.6 346 70.2
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.4e-123 446.4 331 73.4
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 4.0e-123 445.7 345 69.9
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 3.8e-121 439.1 341 70.7
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 9.3e-120 434.5 399 62.9
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.6e-119 433.7 345 70.1
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.7e-119 433.0 345 69.6
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.6e-119 432.2 345 69.9
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 7.8e-119 431.4 346 69.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.3e-118 430.6 290 77.6
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.3e-118 429.9 345 68.4
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 5.1e-118 428.7 328 70.7
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.8e-116 422.9 345 69.0
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 4.8e-116 422.2 345 68.4
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.4e-115 420.6 345 68.4
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.2e-114 417.5 339 68.1
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 2.0e-114 416.8 345 68.1
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 2.2e-113 413.3 337 67.4
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.2e-113 413.3 341 66.0
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.4e-112 410.6 345 67.8
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 9.3e-112 407.9 289 73.0
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.1e-111 406.8 345 67.5
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.3e-110 404.1 345 66.1
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.8e-110 403.7 373 62.7
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.3e-110 403.3 346 66.2
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.9e-110 402.5 345 65.5
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.1e-109 401.0 345 66.7
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.2e-105 386.7 287 70.7
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.2e-105 386.7 347 62.0
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.8e-105 386.0 345 64.6
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.8e-105 386.0 345 64.6
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 6.4e-105 385.2 345 62.9
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 4.2e-104 382.5 345 64.1
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 2.1e-103 380.2 326 63.8
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 3.5e-103 379.4 345 62.9
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 6.0e-103 378.6 319 68.7
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.7e-102 374.8 338 63.3
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 2.5e-101 373.2 345 64.6
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 7.4e-101 371.7 261 73.2
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 7.4e-101 371.7 345 60.3
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.1e-100 370.2 345 61.2
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.4e-99 366.7 324 62.3
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.6e-98 363.2 343 61.5
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.8e-98 362.1 348 58.6
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.3e-97 360.9 366 58.2
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.7e-97 360.5 345 59.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.7e-95 353.2 350 57.1
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 3.5e-95 352.8 345 61.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 5.1e-94 349.0 295 65.4
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.7e-94 348.2 347 57.1
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 2.5e-93 346.7 348 56.9
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 5.9e-90 335.5 346 56.6
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.7e-89 334.0 346 57.2
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.8e-89 332.8 333 59.5
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.1e-88 331.3 338 58.3
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.9e-88 330.5 325 61.2
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.2e-87 327.8 324 59.3
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 3.9e-86 322.8 346 56.9
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 3.9e-86 322.8 346 56.9
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 4.3e-85 319.3 346 56.1
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 9.7e-85 318.2 278 65.8
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 3.7e-84 316.2 346 55.5
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.4e-83 314.3 346 54.9
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.4e-83 313.5 348 54.6
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 3.4e-82 309.7 345 53.0
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.3e-81 307.8 334 50.6
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.8e-81 306.2 346 53.2
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 8.5e-81 305.1 321 53.0
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 7.9e-79 298.5 343 55.4
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.9e-78 296.2 292 61.6
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.8e-78 295.0 345 51.0
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 3.3e-77 293.1 347 52.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.7e-76 290.8 345 51.6
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.2e-76 290.4 344 54.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 5.3e-75 285.8 318 52.8
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 6.9e-75 285.4 341 52.2
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 5.0e-73 279.3 343 51.9
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.4e-72 277.7 263 60.8
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 4.2e-72 276.2 285 58.9
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.5e-72 275.8 325 51.1
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.0e-70 270.0 342 50.3
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 8.8e-70 268.5 303 55.4
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-69 267.7 206 71.4
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.8e-68 263.5 284 56.7
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 8.2e-68 261.9 296 55.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 6.5e-65 252.3 289 52.6
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 6.1e-63 245.7 356 49.2
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 3.0e-62 243.4 354 48.6
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 6.7e-62 242.3 342 41.8
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.0e-61 240.7 338 43.8
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 3.7e-60 236.5 291 50.2
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 7.7e-58 228.8 326 44.2
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 9.4e-56 221.9 138 89.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 4.0e-54 216.5 296 45.6
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.8e-51 207.6 343 37.9
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 5.9e-50 202.6 242 51.2
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 5.9e-50 202.6 185 58.4
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 9.5e-48 195.3 226 52.2
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 6.3e-44 182.6 306 45.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 7.0e-43 179.1 139 70.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.3e-41 174.1 228 48.2
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.3e-38 164.1 172 58.7
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 2.7e-34 150.6 284 40.1
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.6e-32 142.9 321 37.4
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 4.9e-28 129.8 172 51.2
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 3.2e-27 127.1 306 37.6
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 2.1e-23 114.4 284 35.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 2.1e-23 114.4 284 35.2
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.3e-16 90.5 111 53.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 8.1e-15 85.9 55 83.6
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.5e-13 81.6 54 79.6
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 5.8e-13 79.7 111 48.6
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.8e-12 77.0 306 30.4


User provided reference genes

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