Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0249000 Rhododendron simsii HOM05D001172 ORTHO05D024737 6.7e-111 404.1 209 100.0
Rhsim07G0248900 Rhododendron simsii HOM05D001172 ORTHO05D024737 2.7e-88 328.9 200 86.5
Rhsim07G0248800 Rhododendron simsii HOM05D001172 ORTHO05D024737 4.4e-70 268.5 204 72.1
vmacro17153 Vaccinium macrocarpon HOM05D001172 ORTHO05D024737 3.0e-50 202.6 293 46.8
Actinidia37947 Actinidia chinensis HOM05D001172 ORTHO05D001128 9.0e-31 137.9 201 46.8
CSS0000285 Camellia sinensis var. sinensis HOM05D001172 ORTHO05D024737 1.2e-14 84.3 183 41.0
Nitab4.5_0001561g0100 Nicotiana tabacum HOM05D001172 ORTHO05D001128 2.9e-13 79.7 172 35.5
Nitab4.5_0001685g0030 Nicotiana tabacum HOM05D001172 ORTHO05D001128 5.0e-13 79.0 172 35.5
Rhsim10G0206300 Rhododendron simsii HOM05D001172 ORTHO05D001128 8.4e-13 78.2 169 34.9
Nn5g30840 Nelumbo nucifera HOM05D001172 ORTHO05D001128 9.3e-12 74.7 202 33.7
Lj2A484T46 Lonicera japonica HOM05D001172 ORTHO05D001128 3.0e-10 69.7 204 33.3
Manes.02G110100 Manihot esculenta HOM05D001172 ORTHO05D001128 3.9e-10 69.3 139 36.7
arahy.Tifrunner.gnm1.ann1.JM6ZP6 Arachis hypogaea HOM05D001172 ORTHO05D001128 5.1e-10 68.9 131 36.6
VMungo1215G1143 Vigna mungo HOM05D001172 ORTHO05D001128 5.1e-10 68.9 185 33.5
COL.COLO4_22492 Corchorus olitorius HOM05D001172 ORTHO05D001128 1.5e-09 67.4 139 35.3
Lalb_Chr09g0321471 Lupinus albus HOM05D001172 ORTHO05D001128 1.5e-09 67.4 188 32.4
ECA232G3628 Erigeron canadensis HOM05D001172 ORTHO05D001128 1.9e-09 67.0 139 33.1
Nitab4.5_0008809g0040 Nicotiana tabacum HOM05D001172 ORTHO05D001128 1.9e-09 67.0 182 33.0
Glyma.11G080500 Glycine max HOM05D001172 ORTHO05D001128 2.5e-09 66.6 131 36.6
Glyma.01G162900 Glycine max HOM05D001172 ORTHO05D001128 3.3e-09 66.2 180 34.4
Hund14173 Selenicereus undatus HOM05D001172 ORTHO05D001128 5.7e-09 65.5 184 33.7
Actinidia28731 Actinidia chinensis HOM05D001172 ORTHO05D001128 7.4e-09 65.1 203 32.5
Hma1.2p1_0561F.1_g178980 Hydrangea macrophylla HOM05D001172 ORTHO05D001128 7.4e-09 65.1 188 31.9
PGSC0003DMG400022525 Solanum tuberosum HOM05D001172 ORTHO05D001128 9.7e-09 64.7 131 36.6
Dinv40143 Davidia involucrata HOM05D000041 ORTHO05D010141 1.3e-08 64.3 123 38.2
HanXRQChr15g0484751 Helianthus annuus HOM05D001172 ORTHO05D001128 2.2e-08 63.5 171 32.7
Glyma.02G044300 Glycine max HOM05D001172 ORTHO05D001128 3.7e-08 62.8 182 33.5
Sopen03g006110 Solanum pennellii HOM05D001172 ORTHO05D001128 4.8e-08 62.4 131 35.9
Cfa007027 Carpinus fangiana HOM05D001172 ORTHO05D001128 6.3e-08 62.0 123 37.4
Haze_03706 Corylus avellana HOM05D001172 ORTHO05D001128 6.3e-08 62.0 123 37.4
PGSC0003DMG400023881 Solanum tuberosum HOM05D001172 ORTHO05D001128 6.3e-08 62.0 123 37.4
Aqoxy6G02017 Aquilegia oxysepala HOM05D001172 ORTHO05D001128 8.2e-08 61.6 174 32.8
Peaxi162Scf00439g00037 Petunia axillaris HOM05D001172 ORTHO05D001128 8.2e-08 61.6 123 37.4
Phvul.003G267100 Phaseolus vulgaris HOM05D001172 ORTHO05D001128 8.2e-08 61.6 189 30.7
Cc07_g11290 Coffea canephora HOM05D001172 ORTHO05D001128 1.1e-07 61.2 202 31.7
Lj2g0002819 Lotus japonicus HOM05D001172 ORTHO05D001128 1.1e-07 61.2 184 32.1
PGR102G2081 Punica granatum HOM05D001172 ORTHO05D001128 1.1e-07 61.2 177 31.6
Hund16619 Selenicereus undatus HOM05D001172 ORTHO05D001128 1.1e-07 61.2 170 33.5
Solyc03g033330.3 Solanum lycopersicum HOM05D001172 ORTHO05D001128 1.1e-07 61.2 132 35.6
Lsat_1_v5_gn_3_71041 Lactuca sativa HOM05D001172 ORTHO05D001128 1.4e-07 60.8 133 34.6
QL06p051995 Quercus lobata HOM05D001172 ORTHO05D001128 1.4e-07 60.8 123 37.4
HanXRQChr09g0257201 Helianthus annuus HOM05D001172 ORTHO05D001128 1.8e-07 60.5 123 37.4
Lsat_1_v5_gn_2_75500 Lactuca sativa HOM05D001172 ORTHO05D001128 1.8e-07 60.5 203 30.5
MBI05_g16045_MAGBIO Magnolia biondii HOM05D001172 ORTHO05D001128 1.8e-07 60.5 119 37.0
Peaxi162Scf00328g00120 Petunia axillaris HOM05D001172 ORTHO05D001128 1.8e-07 60.5 123 37.4
Potri.005G108200 Populus trichocarpa HOM05D001172 ORTHO05D001128 1.8e-07 60.5 123 35.0
CAN.G354.65 Capsicum annuum HOM05D001172 ORTHO05D001128 2.4e-07 60.1 131 35.1
Duzib187G1536 Durio zibethinus HOM05D001172 ORTHO05D001128 2.4e-07 60.1 184 29.9
Nitab4.5_0000188g0240 Nicotiana tabacum HOM05D001172 ORTHO05D001128 2.4e-07 60.1 178 30.9
Peaxi162Scf00718g00012 Petunia axillaris HOM05D001172 ORTHO05D001128 2.4e-07 60.1 131 34.4
Atru.chr3.904 Acer truncatum HOM05D001172 ORTHO05D001128 3.1e-07 59.7 123 35.8
HanXRQChr13g0414531 Helianthus annuus HOM05D001172 ORTHO05D001128 3.1e-07 59.7 171 30.4
Lalb_Chr16g0377391 Lupinus albus HOM05D001172 ORTHO05D001128 3.1e-07 59.7 182 31.3
FAN23G2982 Fragaria x ananassa HOM05D001172 ORTHO05D001128 4.1e-07 59.3 187 29.9
Sc03g0003770 Simmondsia chinensis HOM05D001172 ORTHO05D001128 4.1e-07 59.3 124 36.3
Solyc02g083400.3 Solanum lycopersicum HOM05D001172 ORTHO05D001128 4.1e-07 59.3 204 31.4
Ah.03g134310 Amaranthus hybridus HOM05D001172 ORTHO05D001128 5.3e-07 58.9 123 35.8
CAN.G953.2 Capsicum annuum HOM05D001172 ORTHO05D001128 5.3e-07 58.9 123 36.6
ECA238G3456 Erigeron canadensis HOM05D000041 ORTHO05D010141 5.3e-07 58.9 123 35.0
Gohir.A11G040900 Gossypium hirsutum HOM05D001172 ORTHO05D001128 5.3e-07 58.9 141 32.6
Sopen02g028180 Solanum pennellii HOM05D001172 ORTHO05D001128 5.3e-07 58.9 189 31.2
PGSC0003DMG400003661 Solanum tuberosum HOM05D001172 ORTHO05D001128 5.3e-07 58.9 123 36.6
Thecc.01G011800 Theobroma cacao HOM05D001172 ORTHO05D001128 6.9e-07 58.5 123 35.8
Lsat_1_v5_gn_4_144221 Lactuca sativa HOM05D001172 ORTHO05D001128 1.2e-06 57.8 123 34.1
Duzib264G1174 Durio zibethinus HOM05D001172 ORTHO05D001128 2.0e-06 57.0 171 30.4
PSO675G1544 Papaver somniferum HOM05D001172 ORTHO05D001128 2.0e-06 57.0 188 32.4
PGR119G2262 Punica granatum HOM05D001172 ORTHO05D001128 2.0e-06 57.0 179 33.0
TAR625G0800 Trochodendron aralioides HOM05D000373 ORTHO05D001128 4.5e-06 55.8 112 36.6
PSO541G3198 Papaver somniferum HOM05D001172 ORTHO05D001128 5.9e-06 55.5 185 31.9
EL10Ac6g13331 Beta vulgaris HOM05D001172 ORTHO05D001128 7.7e-06 55.1 186 28.0


User provided reference genes

Program Settings