Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 3.2e-167 591.7 294 100.0
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 2.1e-54 216.9 299 44.5
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 5.3e-53 212.2 294 44.2
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.3e-51 207.6 298 43.6
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.1e-49 200.3 290 43.4
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 1.3e-48 197.6 300 41.3
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 2.3e-48 196.8 277 41.5
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.5e-42 176.8 274 39.1
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.1e-42 175.3 275 41.1
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 7.4e-39 165.2 283 39.9
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.6e-38 164.1 277 40.4
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.1e-38 163.7 269 41.6
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 3.8e-35 152.9 282 37.2
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 1.6e-33 147.5 248 38.7
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 3.6e-33 146.4 283 35.0
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 3.6e-33 146.4 262 37.0
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.3e-32 143.7 273 35.9
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 8.7e-32 141.7 135 53.3
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 8.7e-32 141.7 271 38.7
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 2.5e-31 140.2 257 39.7
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 5.7e-31 139.0 256 38.7
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 9.7e-31 138.3 123 56.1
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 1.6e-30 137.5 278 35.3
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 2.2e-30 137.1 264 36.0
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.3e-30 135.6 135 51.9
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 6.3e-30 135.6 125 54.4
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 6.3e-30 135.6 262 37.0
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 3.1e-29 133.3 135 49.6
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 4.1e-29 132.9 273 33.7
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.3e-29 132.5 140 50.0
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.9e-29 132.1 274 34.7
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 6.9e-29 132.1 251 36.7
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 6.9e-29 132.1 251 36.7
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.2e-28 131.3 286 32.5
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 4.5e-28 129.4 138 48.6
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.9e-28 129.0 134 50.7
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 5.9e-28 129.0 277 35.4
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.0e-27 128.3 278 34.9
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.2e-27 127.1 134 50.0
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 2.9e-27 126.7 273 34.1
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.5e-27 125.6 135 48.9
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 8.5e-27 125.2 282 33.3
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 2.5e-26 123.6 244 36.5
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 5.5e-26 122.5 301 32.2
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 5.5e-26 122.5 282 32.6
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 2.1e-25 120.6 238 33.2
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 3.6e-25 119.8 244 32.8
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 6.1e-25 119.0 242 33.9
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 6.1e-25 119.0 260 31.5
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 7.9e-25 118.6 257 34.2
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 7.9e-25 118.6 231 30.7
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 1.4e-24 117.9 271 31.7
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 2.3e-24 117.1 254 33.1
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 2.3e-24 117.1 249 35.3
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 5.1e-24 115.9 286 32.2
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.7e-24 115.5 131 49.6
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 8.8e-24 115.2 183 41.0
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 1.1e-23 114.8 253 34.8
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 1.5e-23 114.4 248 35.5
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.0e-23 114.0 123 50.4
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 2.6e-23 113.6 114 50.9
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 3.3e-23 113.2 239 32.6
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 5.7e-23 112.5 222 35.1
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 7.4e-23 112.1 247 33.6
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 9.7e-23 111.7 239 33.9
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 1.7e-22 110.9 264 31.1
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 6.3e-22 109.0 105 47.6
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 6.3e-22 109.0 251 29.9
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.3e-22 109.0 131 46.6
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 8.2e-22 108.6 100 48.0
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 1.1e-21 108.2 275 31.3
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 1.1e-21 108.2 230 33.9
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.1e-21 108.2 277 31.8
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 3.1e-21 106.7 283 31.8
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 6.9e-21 105.5 269 32.0
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 9.1e-21 105.1 246 30.5
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.5e-20 104.4 265 30.9
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 1.5e-20 104.4 114 44.7
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 1.3e-19 101.3 296 27.4
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.3e-19 101.3 261 32.2
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.2e-19 100.5 263 29.3
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 3.8e-19 99.8 261 31.4
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.5e-19 99.0 265 28.7
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 1.1e-18 98.2 279 29.0
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 1.1e-18 98.2 279 29.0
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 1.1e-18 98.2 125 38.4
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 1.4e-18 97.8 262 30.9
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 3.2e-18 96.7 252 31.3
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 5.5e-18 95.9 263 30.0
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.2e-18 95.5 253 31.2
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 1.6e-17 94.4 253 29.6
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.6e-17 94.4 282 29.1
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.6e-17 94.4 282 29.1
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 2.7e-17 93.6 137 38.7
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 6.1e-17 92.4 97 42.3
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 7.9e-17 92.0 190 35.8
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 1.0e-16 91.7 246 28.9
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 1.0e-16 91.7 239 31.0
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 1.8e-16 90.9 275 29.8
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 1.8e-16 90.9 150 35.3
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 1.8e-16 90.9 205 32.7
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 3.9e-16 89.7 175 33.7
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 3.9e-16 89.7 270 30.0
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 5.2e-16 89.4 274 28.8
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 8.8e-16 88.6 244 28.7
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 1.1e-15 88.2 285 29.5
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 1.1e-15 88.2 110 40.0
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 1.5e-15 87.8 271 27.7
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 2.6e-15 87.0 155 34.2
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 5.7e-15 85.9 117 42.7
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 7.4e-15 85.5 243 31.3
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 9.7e-15 85.1 154 32.5
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 9.7e-15 85.1 227 29.1
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 1.7e-14 84.3 272 27.6
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 1.7e-14 84.3 195 31.3
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 2.2e-14 84.0 197 32.0
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 2.8e-14 83.6 95 48.4
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 2.8e-14 83.6 278 29.5
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 3.7e-14 83.2 271 27.3
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 3.7e-14 83.2 161 36.0
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 6.3e-14 82.4 124 36.3
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 8.2e-14 82.0 279 29.0
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 8.2e-14 82.0 279 29.0
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 1.1e-13 81.6 278 29.1
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 1.1e-13 81.6 280 26.8
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 1.8e-13 80.9 125 35.2
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 2.4e-13 80.5 173 31.2
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 3.1e-13 80.1 120 38.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 4.1e-13 79.7 131 37.4
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 4.1e-13 79.7 272 27.9
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 7.0e-13 79.0 141 34.8
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 1.2e-12 78.2 116 43.1
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 1.2e-12 78.2 116 43.1
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 1.2e-12 78.2 86 40.7
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.6e-12 77.0 157 29.9
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.5e-12 76.6 244 29.1
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.5e-12 76.6 265 28.3
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 1.7e-11 74.3 274 29.6
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 5.0e-11 72.8 262 28.2
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 8.5e-11 72.0 250 26.8
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 8.5e-11 72.0 250 27.2
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.1e-10 71.6 245 26.1
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.9e-10 70.9 269 29.7
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 3.2e-10 70.1 259 27.0
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.2e-10 69.7 95 36.8
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 9.4e-10 68.6 151 31.1
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 9.4e-10 68.6 250 26.8
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 2.1e-09 67.4 103 36.9
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 2.7e-09 67.0 124 36.3
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 2.7e-09 67.0 247 27.9
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 6.1e-09 65.9 117 36.8
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 8.0e-09 65.5 197 27.9
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 1.0e-08 65.1 131 29.8
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 1.4e-08 64.7 94 38.3
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 1.8e-08 64.3 158 30.4
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 2.3e-08 63.9 129 33.3
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 3.0e-08 63.5 213 28.2
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 5.2e-08 62.8 278 27.3
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 8.8e-08 62.0 256 28.1
SEGI_08793 Sequoiadendron giganteum HOM05D019663 ORTHO05D003195 8.8e-08 62.0 255 25.1
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 1.5e-07 61.2 261 24.5
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 2.6e-07 60.5 122 34.4
Aa31LG2G16400 Aethionema arabicum HOM05D009953 ORTHO05D003195 3.3e-07 60.1 277 26.0
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 4.4e-07 59.7 187 25.7
Medtr4g085990 Medicago truncatula HOM05D003792 ORTHO05D003195 4.4e-07 59.7 279 26.9
AT4G33980 Arabidopsis thaliana HOM05D009953 ORTHO05D003195 5.7e-07 59.3 89 39.3
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 5.7e-07 59.3 278 26.6
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 7.5e-07 58.9 100 35.0
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 7.5e-07 58.9 275 23.3
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 1.3e-06 58.2 103 35.9
Oeu007289.1 Olea europaea HOM05D011234 ORTHO05D003195 1.3e-06 58.2 104 27.9
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 1.3e-06 58.2 250 26.8
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 2.8e-06 57.0 236 27.1
arahy.Tifrunner.gnm1.ann1.I5Q2RG Arachis hypogaea HOM05D003792 ORTHO05D003195 3.7e-06 56.6 252 25.8
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 3.7e-06 56.6 82 40.2
SMO357G0023 Selaginella moellendorffii HOM05D019663 ORTHO05D023549 6.3e-06 55.8 126 27.8
SEGI_40396 Sequoiadendron giganteum HOM05D003792 ORTHO05D003195 6.3e-06 55.8 127 31.5
Migut.N01186 Erythranthe guttata HOM05D011234 ORTHO05D003195 8.2e-06 55.5 74 37.8
Glyma.02G131800 Glycine max HOM05D003792 ORTHO05D003195 8.2e-06 55.5 278 24.5


User provided reference genes

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