Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.3e-301 1038.9 523 100.0
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 6.1e-294 1013.4 523 97.9
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.7e-280 968.8 576 87.2
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.1e-254 880.6 524 84.5
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.7e-249 865.1 524 84.2
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 2.3e-248 862.1 500 87.6
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.2e-246 856.3 521 83.7
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 9.8e-244 846.7 526 83.1
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 2.6e-228 795.4 533 77.3
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 9.8e-228 793.5 524 77.7
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 4.9e-227 791.2 520 78.7
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.9e-226 789.3 526 76.2
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.2e-225 786.6 526 78.1
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-225 786.6 521 77.7
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.2e-225 786.6 523 77.4
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 4.6e-225 784.6 537 76.4
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.0e-224 783.5 468 84.8
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.0e-224 783.5 524 76.7
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 1.3e-224 783.1 530 77.5
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.7e-224 782.7 472 84.3
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 6.6e-224 780.8 523 76.7
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 2.5e-223 778.9 470 84.5
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 3.3e-223 778.5 442 87.1
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 3.3e-223 778.5 440 87.7
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 9.5e-223 776.9 461 84.4
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 6.2e-222 774.2 470 83.4
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 6.2e-222 774.2 535 74.2
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 3.1e-221 771.9 474 82.5
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.2e-221 771.2 468 82.5
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 6.8e-221 770.8 500 79.2
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 8.9e-221 770.4 433 87.8
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 2.0e-220 769.2 436 87.4
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.4e-220 768.5 537 73.6
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 2.2e-219 765.8 445 85.4
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 4.9e-219 764.6 524 74.6
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.1e-218 763.5 530 73.6
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.9e-218 762.7 522 76.1
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 3.2e-218 761.9 526 75.1
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.2e-218 761.9 470 81.9
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 9.2e-218 760.4 479 80.2
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 9.2e-218 760.4 527 74.6
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 9.2e-218 760.4 536 75.2
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.6e-217 759.6 428 87.4
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 4.6e-217 758.1 455 81.3
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.0e-216 756.9 507 77.5
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 5.1e-216 754.6 441 85.0
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 6.6e-216 754.2 522 73.8
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 6.6e-216 754.2 530 73.4
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.1e-215 753.4 450 83.1
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.1e-214 749.2 521 73.9
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 2.8e-214 748.8 494 77.5
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 2.8e-214 748.8 529 73.3
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 4.7e-214 748.0 458 80.1
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 4.7e-214 748.0 457 83.2
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 6.2e-214 747.7 448 83.7
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 6.2e-214 747.7 501 77.2
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 8.1e-214 747.3 489 77.3
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 8.1e-214 747.3 500 76.4
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.1e-213 746.9 525 73.3
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.2e-213 744.6 438 84.7
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 9.0e-213 743.8 419 88.5
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 1.2e-212 743.4 444 84.0
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.6e-212 742.3 440 84.5
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 2.6e-212 742.3 445 83.1
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 9.9e-212 740.3 463 80.6
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.3e-211 740.0 511 75.3
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.7e-211 739.6 438 83.6
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.2e-211 739.2 526 72.8
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 1.4e-210 736.5 419 87.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 7.1e-210 734.2 458 80.8
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 7.1e-210 734.2 438 83.1
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.2e-209 733.4 515 75.0
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.2e-209 733.4 437 83.3
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 3.5e-209 731.9 455 81.5
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 4.6e-209 731.5 441 83.0
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 6.0e-209 731.1 422 85.3
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 3.0e-208 728.8 470 77.9
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 3.9e-208 728.4 445 81.1
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 3.9e-208 728.4 455 79.8
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 6.6e-208 727.6 478 77.8
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 8.7e-208 727.2 476 78.6
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.7e-208 727.2 437 81.9
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 2.5e-207 725.7 445 81.3
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 4.3e-207 724.9 441 81.6
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 4.8e-206 721.5 532 71.1
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 4.8e-206 721.5 532 71.1
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 4.0e-205 718.4 428 82.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.0e-205 718.4 428 82.7
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 5.3e-205 718.0 442 80.8
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 6.9e-205 717.6 449 78.2
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.0e-204 716.1 455 76.9
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 7.6e-204 714.1 426 83.3
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.3e-203 713.4 442 80.5
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.3e-203 713.4 428 82.9
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.2e-203 712.6 428 82.5
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 3.8e-203 711.8 433 80.4
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 4.9e-203 711.4 428 82.9
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 3.2e-202 708.8 428 82.7
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 3.2e-202 708.8 428 82.7
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 5.4e-202 708.0 504 73.0
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 9.3e-202 707.2 428 81.8
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 4.6e-201 704.9 428 82.2
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 4.6e-201 704.9 518 71.0
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.3e-200 703.4 433 82.2
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.1e-199 700.3 530 68.3
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 7.4e-199 697.6 429 80.4
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.6e-198 696.4 438 78.5
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 4.8e-198 694.9 432 78.0
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 3.4e-196 688.7 461 76.8
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.1e-194 681.0 403 84.9
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-193 679.9 515 71.3
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 2.7e-193 679.1 495 70.5
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.4e-188 662.1 487 71.3
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.1e-183 647.1 426 73.5
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.3e-181 638.3 433 72.5
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 5.0e-179 631.7 445 68.5
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 9.3e-178 627.5 445 69.7
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 7.7e-172 607.8 432 68.8
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 4.4e-167 592.0 369 80.2
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.7e-158 563.5 326 86.5
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.5e-156 555.8 338 82.5
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.2e-152 542.0 302 87.4
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 9.1e-149 531.2 311 83.6
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.5e-147 525.0 302 87.1
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 3.2e-146 522.7 435 60.9
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 5.7e-143 511.9 301 82.1
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.1e-141 507.7 329 77.5
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.2e-140 504.2 428 61.4
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.1e-138 497.7 454 57.0
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.4e-135 485.7 302 80.8
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.8e-135 484.6 343 73.2
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 3.0e-123 446.4 423 56.3
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 4.3e-122 442.6 273 79.9
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.3e-107 393.7 431 46.9
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.3e-99 367.9 238 78.6
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.4e-94 349.0 437 44.4
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-79 301.6 175 84.6
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.8e-73 280.4 358 43.6
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.8e-57 226.5 137 82.5
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-55 220.3 186 65.1
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.0e-47 194.5 125 76.0
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.4e-45 185.7 128 73.4
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.2e-44 185.3 123 74.8
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.0e-43 182.2 184 52.7
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.7e-41 174.9 120 71.7
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 2.6e-39 167.5 454 30.0
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 9.7e-34 149.1 90 81.1
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 2.2e-30 137.9 84 75.0
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 2.2e-30 137.9 84 75.0
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 9.4e-29 132.5 103 64.1
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.6e-28 131.7 95 64.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 6.1e-28 129.8 95 63.2
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 2.3e-27 127.9 95 62.1
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 5.2e-27 126.7 92 64.1
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 3.7e-25 120.6 78 75.6
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.0e-23 114.8 82 74.4
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 5.9e-23 113.2 70 72.9
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 5.9e-23 113.2 70 72.9
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.3e-22 112.1 70 71.4
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.7e-17 95.1 254 30.3
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 2.4e-16 91.3 53 81.1
Nitab4.5_0001773g0070 Nicotiana tabacum HOM05D000974 ORTHO05D285698 4.6e-07 60.5 44 63.6


User provided reference genes

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