Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.9e-301 1037.3 523 100.0
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.6e-294 1013.8 523 97.9
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.4e-282 975.7 576 87.7
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.8e-254 881.7 524 84.9
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.5e-249 864.8 524 84.4
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 8.6e-248 860.1 500 87.4
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 6.1e-246 854.0 521 83.7
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 4.4e-244 847.8 526 83.3
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 8.1e-230 800.4 520 79.8
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 8.9e-229 797.0 533 77.7
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 1.2e-228 796.6 523 78.0
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-227 793.1 522 78.4
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 6.4e-227 790.8 523 78.0
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.1e-226 790.0 527 76.5
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.9e-226 789.3 524 77.5
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 7.1e-226 787.3 526 78.5
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.2e-225 786.6 523 77.6
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 1.3e-224 783.1 529 77.5
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 6.6e-224 780.8 537 76.0
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.1e-223 780.0 465 84.3
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.9e-223 779.2 468 84.6
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 2.5e-223 778.9 472 84.1
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 2.1e-222 775.8 440 87.7
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.8e-222 775.4 491 80.7
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 3.6e-222 775.0 470 84.3
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 4.7e-222 774.6 536 74.6
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 8.1e-222 773.9 470 83.6
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 4.4e-220 768.1 537 73.0
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 7.6e-220 767.3 538 74.9
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 1.3e-219 766.5 436 87.4
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.9e-219 765.4 522 76.2
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 4.9e-219 764.6 524 75.0
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.1e-218 763.5 433 87.3
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 4.1e-218 761.5 445 85.2
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.1e-218 760.8 433 86.8
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 9.2e-218 760.4 500 78.4
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 1.2e-217 760.0 527 74.4
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.6e-217 759.6 526 75.1
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.6e-217 759.6 530 73.0
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.7e-217 758.8 454 83.5
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 7.8e-217 757.3 536 74.8
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.7e-216 756.1 523 74.2
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.7e-216 756.1 441 85.3
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 2.3e-216 755.7 522 74.5
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 8.6e-216 753.8 522 73.6
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.1e-215 753.4 504 77.2
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 1.5e-215 753.1 530 73.2
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 2.5e-215 752.3 540 74.1
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 5.6e-215 751.1 507 77.1
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 5.6e-215 751.1 540 73.1
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 9.6e-215 750.4 530 74.0
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.2e-214 750.0 428 86.7
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.2e-214 750.0 525 73.7
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 2.1e-214 749.2 529 73.2
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 2.8e-214 748.8 448 83.9
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 4.7e-214 748.0 458 80.3
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 4.7e-214 748.0 457 83.4
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 2.4e-213 745.7 561 70.6
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 6.9e-213 744.2 527 72.9
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.2e-212 743.4 438 84.7
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.6e-212 742.3 444 84.0
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.6e-212 742.3 463 80.8
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.8e-212 741.1 440 84.5
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 5.8e-212 741.1 445 83.1
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.2e-211 739.2 438 83.8
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 2.9e-211 738.8 419 88.1
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 6.4e-211 737.6 511 75.7
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 4.2e-210 734.9 526 72.2
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 5.4e-210 734.6 437 83.8
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 9.3e-210 733.8 438 83.3
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.6e-209 733.0 455 81.8
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.7e-209 732.3 441 83.0
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 3.5e-209 731.9 422 85.5
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 4.6e-209 731.5 419 86.9
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 7.8e-209 730.7 514 74.9
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 1.0e-208 730.3 458 80.6
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 1.0e-208 730.3 445 81.3
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 3.9e-208 728.4 470 78.1
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 6.6e-208 727.6 445 81.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 8.7e-208 727.2 478 77.8
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 1.1e-207 726.9 455 79.6
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.1e-207 726.9 531 71.0
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 4.3e-207 724.9 516 73.6
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 9.6e-207 723.8 441 81.9
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.1e-205 720.3 442 81.0
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 6.9e-205 717.6 428 82.7
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.5e-204 716.5 535 70.5
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.5e-204 716.5 535 70.5
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 2.6e-204 715.7 428 82.5
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 9.9e-204 713.8 442 80.5
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 9.9e-204 713.8 455 76.9
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.3e-203 713.4 428 83.2
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.3e-203 713.4 426 83.3
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.3e-203 713.4 449 78.0
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.8e-203 711.8 428 82.5
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 3.8e-203 711.8 428 82.9
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 8.4e-203 710.7 428 82.9
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 8.4e-203 710.7 428 82.9
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 7.1e-202 707.6 433 80.1
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.7e-201 705.7 428 82.2
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 4.6e-201 704.9 428 81.5
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 6.7e-200 701.0 550 67.8
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 8.7e-200 700.7 548 69.2
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.5e-199 699.9 429 80.7
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.9e-199 699.5 433 82.0
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 9.6e-199 697.2 438 79.0
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 3.7e-198 695.3 432 78.2
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 6.2e-198 694.5 530 68.1
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 5.8e-196 688.0 461 76.8
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.2e-194 682.2 403 85.1
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.9e-193 677.6 514 71.2
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 7.9e-193 677.6 495 70.5
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.6e-188 662.5 487 71.5
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 5.7e-183 644.8 426 73.5
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-180 637.1 433 72.5
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 6.5e-179 631.3 445 68.8
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.2e-178 628.6 445 69.9
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.3e-171 607.1 432 68.8
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 4.8e-166 588.6 369 79.9
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 9.7e-159 564.3 326 86.8
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.5e-156 555.4 303 89.8
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.8e-152 543.5 302 87.7
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 3.1e-149 532.7 311 83.9
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-146 524.2 299 88.0
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 7.2e-146 521.5 435 60.9
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 2.0e-143 513.5 302 82.1
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.2e-142 510.0 329 78.1
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.3e-139 500.7 428 61.2
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.9e-138 496.9 454 57.0
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.5e-135 487.3 343 73.5
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.5e-135 485.0 299 81.6
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 8.6e-123 444.9 423 56.0
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 8.0e-121 438.3 273 79.5
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.3e-107 394.4 431 47.1
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 2.5e-98 363.6 238 77.7
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.5e-92 343.2 435 43.9
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.0e-80 302.0 175 85.1
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.2e-73 279.3 362 43.6
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.9e-56 222.6 137 81.8
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-55 220.3 186 65.1
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.0e-47 194.5 125 76.0
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.2e-44 185.3 123 74.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.4e-43 181.8 129 72.1
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.8e-43 181.4 184 52.7
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.4e-40 171.8 120 70.8
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.6e-39 168.3 454 30.2
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 9.7e-34 149.1 90 81.1
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 2.2e-30 137.9 84 75.0
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 2.2e-30 137.9 84 75.0
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 9.4e-29 132.5 103 64.1
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.2e-28 132.1 95 64.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 4.7e-28 130.2 95 63.2
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.8e-27 128.3 95 62.1
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 5.2e-27 126.7 92 64.1
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 3.1e-24 117.5 78 74.4
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.0e-23 114.8 82 74.4
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 5.9e-23 113.2 70 72.9
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 5.9e-23 113.2 70 72.9
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.3e-22 112.1 70 71.4
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 8.3e-17 92.8 53 83.0
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.1e-16 92.4 254 29.9
Nitab4.5_0001773g0070 Nicotiana tabacum HOM05D000974 ORTHO05D285698 3.5e-07 60.8 44 63.6


User provided reference genes

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