Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 0.0e+00 2358.9 1231 100.0
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 0.0e+00 1190.3 1316 55.4
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1117.8 1440 50.2
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 4.0e-296 1021.9 805 69.9
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 7.1e-285 984.6 1313 48.7
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 2.6e-271 939.5 1417 45.9
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.9e-269 933.3 1294 47.8
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 6.7e-267 924.9 1286 47.7
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 8.4e-262 907.9 1447 44.0
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 2.1e-260 903.3 1274 46.9
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 6.0e-260 901.7 1302 46.9
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 3.0e-259 899.4 1300 46.2
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.3e-257 894.0 1299 45.2
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 7.6e-255 884.8 1446 42.7
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 1.4e-253 880.6 1274 46.1
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 5.5e-253 878.6 1433 42.6
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.8e-251 873.6 1276 45.5
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 9.7e-250 867.8 1445 43.0
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.2e-249 866.7 1251 46.5
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.2e-249 866.7 1356 44.5
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 1.1e-248 864.4 1445 41.9
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.1e-248 862.4 1320 44.7
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.9e-246 856.3 1369 42.8
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.0e-239 833.6 1141 48.3
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 2.6e-239 833.2 1401 41.5
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 8.8e-235 818.1 1133 47.7
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 1.1e-234 817.8 1403 41.3
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 1.8e-232 810.4 1384 40.9
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 3.2e-229 799.7 1430 40.4
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 4.2e-229 799.3 1211 44.3
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 1.5e-226 790.8 1340 42.6
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 2.0e-226 790.4 1353 41.4
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.4e-224 783.5 979 48.9
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 2.2e-222 776.9 1432 39.5
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.9e-221 773.9 1428 39.1
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.6e-220 770.8 1380 38.6
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.0e-219 768.1 1473 38.0
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.7e-214 750.7 1372 40.4
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 7.2e-213 745.3 1213 41.7
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 3.6e-212 743.0 1406 39.2
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 8.0e-212 741.9 1298 41.5
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 6.8e-211 738.8 1428 38.8
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 3.4e-210 736.5 1431 38.7
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 9.8e-210 734.9 1410 39.0
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 4.1e-208 729.6 1474 35.7
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.0e-206 724.9 1141 43.8
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 2.3e-206 723.8 1398 39.1
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 5.0e-206 722.6 1208 40.4
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 6.6e-206 722.2 1469 36.8
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 1.1e-205 721.5 1427 38.3
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 1.1e-205 721.5 1368 39.0
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 1.9e-205 720.7 1321 38.5
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 8.0e-204 715.3 1049 42.7
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 9.2e-200 701.8 1194 41.5
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.7e-198 697.6 763 53.3
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 2.3e-198 697.2 1438 38.2
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 5.2e-195 686.0 1508 36.5
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 2.9e-193 680.2 1382 38.2
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 3.7e-193 679.9 1254 38.3
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.4e-192 677.9 1437 37.4
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 3.2e-192 676.8 1420 37.3
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 4.1e-192 676.4 1248 38.9
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 5.4e-192 676.0 1254 38.9
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 2.7e-191 673.7 1306 40.0
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 8.6e-190 668.7 1359 37.2
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 3.6e-188 663.3 1185 40.3
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 8.9e-187 658.7 1265 39.1
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 2.0e-186 657.5 1250 38.5
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 3.7e-185 653.3 1222 38.7
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.4e-184 651.4 1264 39.1
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.9e-184 651.0 1234 37.8
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 4.6e-183 646.4 1414 36.8
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.3e-181 639.8 1180 37.9
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 5.6e-181 639.4 1327 38.7
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 5.6e-181 639.4 1307 37.6
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 7.3e-181 639.0 1241 37.6
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 7.3e-181 639.0 1194 41.8
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 1.6e-180 637.9 1426 36.5
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 1.6e-180 637.9 1241 37.4
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 3.6e-180 636.7 1234 37.8
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 4.9e-177 626.3 1442 34.7
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 7.1e-176 622.5 1099 39.9
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 2.5e-173 614.0 757 48.7
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 1.4e-168 598.2 1302 36.9
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 3.0e-166 590.5 1367 33.7
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 7.1e-160 569.3 814 44.5
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 2.1e-156 557.8 1217 36.0
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 7.4e-133 479.6 593 49.1
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 3.5e-122 444.1 1089 33.4
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 6.1e-119 433.3 785 38.6
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 4.5e-114 417.2 919 36.6
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.3e-81 309.3 344 52.6
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.1e-78 299.7 287 57.8
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 9.2e-75 286.6 277 58.1
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.2e-74 286.2 364 46.4
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.5e-64 251.9 690 31.9
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 7.3e-64 250.4 842 27.3
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.0e-61 242.3 678 34.8
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 5.3e-54 217.6 294 54.1
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 4.2e-51 208.0 660 30.2
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.5e-48 198.7 433 36.3
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 3.3e-48 198.4 704 26.6
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 7.4e-40 170.6 221 45.2
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 4.5e-37 161.4 241 53.9
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 2.9e-36 158.7 697 25.7
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 4.2e-35 154.8 222 43.2
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 7.9e-34 150.6 931 24.6
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 8.7e-33 147.1 548 28.1
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 6.3e-23 114.4 126 55.6
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 4.5e-21 108.2 236 34.3
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 5.9e-21 107.8 85 55.3
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 1.0e-20 107.1 259 34.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.6e-18 99.8 77 55.8
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.1e-18 99.4 77 54.5
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 2.0e-16 92.8 217 34.1
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.0e-16 92.8 74 55.4
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 4.3e-16 91.7 176 38.1
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 7.4e-16 90.9 96 51.0
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.7e-15 89.7 191 35.6
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 4.1e-14 85.1 54 72.2
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 9.1e-14 84.0 118 42.4
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 3.4e-13 82.0 113 46.9
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 3.0e-09 68.9 171 36.3
Actinidia22689 Actinidia chinensis HOM05D001879 ORTHO05D007648 5.1e-09 68.2 59 57.6
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 5.1e-09 68.2 92 44.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 6.7e-09 67.8 62 56.5
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 2.6e-08 65.9 80 41.2
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 1.7e-07 63.2 115 27.8
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.8e-07 62.4 109 40.4
Sc19g0002840 Simmondsia chinensis HOM05D002300 ORTHO05D002340 6.3e-07 61.2 147 29.3
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 8.2e-07 60.8 82 42.7
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 1.4e-06 60.1 153 25.5
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 2.4e-06 59.3 113 27.4
SGA_v2.0_scaffold12G06172 Striga asiatica HOM05D002300 ORTHO05D002340 3.1e-06 58.9 82 34.1
MSTRG.9753 Avicennia marina HOM05D002300 ORTHO05D002340 4.1e-06 58.5 73 32.9
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 5.3e-06 58.2 113 28.3
AUR62023840 Chenopodium quinoa HOM05D002300 ORTHO05D002340 5.3e-06 58.2 158 22.8
AL5G41460 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 7.0e-06 57.8 107 28.0
Nitab4.5_0006064g0040 Nicotiana tabacum HOM05D002300 ORTHO05D002340 7.0e-06 57.8 80 36.2


User provided reference genes

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