Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.1e-226 787.7 399 100.0
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.0e-200 701.8 416 88.7
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 3.7e-182 641.7 394 84.8
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.8e-180 634.4 399 85.0
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 3.8e-171 605.1 394 79.4
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.0e-168 597.0 399 78.2
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.0e-168 595.5 399 77.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.2e-164 583.6 395 77.2
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.5e-164 581.6 371 81.1
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.3e-163 580.1 371 79.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.1e-162 577.0 379 78.9
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.9e-162 576.2 398 76.4
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.5e-162 575.9 373 80.2
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.2e-161 573.5 367 79.3
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.6e-161 571.6 377 77.7
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 6.1e-161 571.2 388 77.1
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 7.9e-161 570.9 368 78.8
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 3.9e-160 568.5 385 77.4
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 6.7e-160 567.8 363 80.2
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 2.0e-159 566.2 369 78.3
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.3e-159 565.1 374 78.9
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 4.3e-159 565.1 393 74.3
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 4.3e-159 565.1 365 79.5
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 9.7e-159 563.9 374 78.9
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.7e-158 563.1 383 76.0
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.7e-158 563.1 364 79.4
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 2.8e-158 562.4 376 76.9
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.7e-158 562.0 374 78.1
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.7e-158 562.0 379 75.7
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 3.7e-158 562.0 387 76.2
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 4.8e-158 561.6 373 76.4
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 8.2e-158 560.8 383 75.5
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.1e-157 560.5 381 76.6
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 1.4e-157 560.1 398 74.1
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.8e-157 559.7 371 78.4
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.8e-157 559.7 363 78.5
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.8e-157 559.7 363 78.5
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.8e-157 559.7 363 78.5
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.8e-157 559.7 369 77.5
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.4e-157 559.3 363 78.5
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 2.4e-157 559.3 363 78.5
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 2.4e-157 559.3 372 78.2
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.1e-157 558.9 363 78.8
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 4.1e-157 558.5 363 78.5
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 4.1e-157 558.5 363 78.5
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 4.1e-157 558.5 363 78.2
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 5.3e-157 558.1 366 77.9
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 9.1e-157 557.4 367 77.4
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.5e-156 556.6 366 77.6
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 3.4e-156 555.4 363 78.0
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.4e-156 555.4 383 74.4
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 7.7e-156 554.3 362 78.5
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 7.7e-156 554.3 365 77.8
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 2.2e-155 552.7 381 75.3
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.9e-155 552.4 364 77.2
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 5.0e-155 551.6 363 77.7
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 8.5e-155 550.8 363 78.8
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 8.5e-155 550.8 377 75.1
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-154 550.4 363 78.8
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.4e-154 550.1 367 76.6
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.4e-154 550.1 365 76.7
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.4e-154 550.1 383 74.2
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.9e-154 549.7 363 77.1
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.9e-154 549.7 384 75.0
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.9e-154 549.7 379 75.2
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.5e-154 549.3 367 76.8
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.5e-154 548.1 363 78.5
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.5e-154 548.1 363 78.5
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 9.4e-154 547.4 383 74.2
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 2.7e-153 545.8 383 73.9
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 2.7e-153 545.8 383 73.9
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 6.1e-153 544.7 383 73.9
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 6.1e-153 544.7 383 74.4
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-152 543.1 363 77.7
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 2.3e-152 542.7 366 75.7
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 3.0e-152 542.3 360 77.2
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 3.9e-152 542.0 383 74.2
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 5.1e-152 541.6 358 77.1
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-152 541.2 380 75.5
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 2.0e-151 539.7 366 76.0
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.7e-151 538.1 381 74.0
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.3e-150 537.0 364 76.1
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.7e-150 536.6 372 75.3
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.7e-150 536.6 383 72.1
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.8e-150 535.8 361 76.5
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.1e-149 533.9 376 74.5
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.4e-149 533.5 387 72.4
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.4e-149 533.5 385 73.2
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.4e-149 532.7 366 74.3
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 7.0e-149 531.2 394 70.8
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-148 530.4 366 74.0
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.0e-148 529.6 365 73.7
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.0e-147 527.3 411 68.1
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.3e-147 526.9 382 72.3
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 6.5e-147 524.6 386 71.5
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 8.5e-147 524.2 384 72.4
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 1.5e-146 523.5 369 73.7
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 9.4e-146 520.8 382 71.2
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-145 520.4 366 71.9
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.6e-145 520.0 411 68.1
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 3.6e-145 518.8 357 75.1
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 6.1e-145 518.1 390 70.8
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.9e-144 515.4 337 78.0
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 2.6e-143 512.7 362 72.7
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.3e-143 512.3 381 69.6
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.6e-140 503.4 333 78.1
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 7.2e-138 494.6 391 69.1
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.6e-137 493.4 361 67.6
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 2.0e-135 486.5 378 68.8
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.2e-134 483.0 323 78.3
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.7e-132 476.1 383 65.0
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-130 470.3 372 67.7
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 7.2e-130 468.0 363 68.0
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.8e-128 463.4 395 64.6
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 6.6e-123 444.9 363 62.0
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 1.9e-122 443.4 304 76.3
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 5.6e-122 441.8 388 60.6
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.1e-121 439.9 363 61.4
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 4.7e-121 438.7 362 62.7
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.4e-120 437.2 362 62.4
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 6.8e-120 434.9 386 62.4
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 4.4e-119 432.2 351 65.2
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 3.7e-118 429.1 322 72.0
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.0e-117 424.9 297 74.7
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.2e-117 424.5 368 62.0
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.5e-111 407.1 353 59.2
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.0e-111 406.8 357 58.0
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 3.4e-111 406.0 383 59.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 8.3e-110 401.4 361 56.5
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.4e-109 399.8 372 59.7
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 7.0e-109 398.3 284 73.2
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.8e-104 383.6 279 72.0
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.0e-104 382.5 344 59.0
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.4e-101 373.2 310 61.3
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 4.1e-101 372.5 276 72.8
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.6e-100 369.0 277 70.8
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.6e-100 369.0 311 64.6
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.1e-98 364.4 386 54.9
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.0e-96 355.9 274 67.9
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-95 354.4 279 67.4
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.0e-91 341.3 272 66.5
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.5e-90 336.7 197 85.3
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 3.3e-90 336.3 356 50.6
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.4e-71 273.1 321 51.7
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-68 264.6 239 63.6
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.5e-61 240.4 161 70.8
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 5.1e-59 232.6 322 43.8
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.4e-58 228.8 137 83.2
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 6.9e-56 222.2 129 84.5
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 4.5e-55 219.5 390 43.1
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 3.8e-54 216.5 253 53.0
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.7e-52 210.3 177 61.6
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 2.8e-49 200.3 115 83.5
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 6.3e-41 172.6 272 35.7
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.0e-38 162.9 92 83.7
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 6.5e-38 162.5 99 74.7
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 4.7e-36 156.4 246 40.7
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 2.0e-34 151.0 98 71.4
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.7e-33 147.9 88 78.4
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 8.2e-33 145.6 140 57.1
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.4e-32 144.8 110 72.7
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.7e-30 137.9 127 63.0
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.1e-29 135.2 179 53.1
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 4.2e-29 133.3 76 84.2
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 4.7e-28 129.8 86 67.4
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 2.0e-23 114.4 58 89.7
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 5.9e-23 112.8 74 73.0
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.0e-22 109.8 73 65.8
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.5e-21 108.2 75 66.7
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 4.7e-20 103.2 77 61.0
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 4.0e-19 100.1 63 84.1
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 8.8e-19 99.0 89 61.8
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 2.7e-15 87.4 78 67.9
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 4.1e-08 63.5 50 66.0


User provided reference genes

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