Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0183800 Rhododendron simsii HOM05D002009 ORTHO05D006831 2.5e-175 618.6 302 100.0
Rhsim12G0060600 Rhododendron simsii HOM05D002009 ORTHO05D006831 1.5e-106 390.2 239 81.2
vmacro04986 Vaccinium macrocarpon HOM05D002009 ORTHO05D006831 2.5e-90 336.3 240 71.2
CSS0012384 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 9.5e-74 281.2 237 60.8
CSS0006817 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 1.4e-72 277.3 237 59.9
Actinidia23644 Actinidia chinensis HOM05D002009 ORTHO05D006831 2.7e-68 263.1 244 59.8
Dinv40301 Davidia involucrata HOM05D002009 ORTHO05D006831 1.5e-63 247.3 245 54.7
TAR633G0909 Trochodendron aralioides HOM05D002009 ORTHO05D006831 3.3e-50 203.0 242 47.5
Lju1040C0G1 Lonicera japonica HOM05D002009 ORTHO05D006831 1.2e-49 201.1 248 45.6
Lj9C89G5 Lonicera japonica HOM05D002009 ORTHO05D006831 6.2e-49 198.7 248 45.2
GSVIVG01000087001 Vitis vinifera HOM05D002009 ORTHO05D006831 1.1e-48 198.0 240 48.3
QL03p007353 Quercus lobata HOM05D002009 ORTHO05D006831 1.2e-47 194.5 255 45.9
QL03p007751 Quercus lobata HOM05D002009 ORTHO05D006831 1.2e-47 194.5 255 45.9
Gohir.A08G210100 Gossypium hirsutum HOM05D002009 ORTHO05D006831 8.4e-46 188.3 174 56.9
Ciclev10003639m.g Citrus clementina HOM05D002009 ORTHO05D006831 1.4e-45 187.6 227 46.7
Gorai.004G241000 Gossypium raimondii HOM05D002009 ORTHO05D006831 1.4e-45 187.6 174 56.3
Nn3g21358 Nelumbo nucifera HOM05D002009 ORTHO05D006831 6.0e-44 182.2 191 49.2
Cpa.g.sc48.67 Carica papaya HOM05D002009 ORTHO05D006831 2.3e-43 180.3 231 45.9
TWI36G1702 Tripterygium wilfordii HOM05D002009 ORTHO05D006831 8.7e-43 178.3 233 45.5
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 8.1e-41 171.8 176 52.8
Atru.chr2.372 Acer truncatum HOM05D002009 ORTHO05D006831 2.4e-40 170.2 191 50.3
Medtr7g113380 Medicago truncatula HOM05D002009 ORTHO05D006831 3.1e-40 169.9 184 48.4
Potri.013G022200 Populus trichocarpa HOM05D002009 ORTHO05D006831 3.1e-40 169.9 248 43.5
Prupe.6G324000 Prunus persica HOM05D002009 ORTHO05D006831 3.1e-40 169.9 197 49.2
RcHm_v2.0_Chr3g0455131 Rosa chinensis HOM05D002009 ORTHO05D006831 3.1e-40 169.9 192 51.0
HanXRQChr15g0469941 Helianthus annuus HOM05D002009 ORTHO05D006831 5.3e-40 169.1 191 48.7
TPR.G33207 Trifolium pratense HOM05D002009 ORTHO05D006831 9.0e-40 168.3 185 44.9
FAN14G2713 Fragaria x ananassa HOM05D002009 ORTHO05D006831 3.4e-39 166.4 180 49.4
Aqoxy2G03070 Aquilegia oxysepala HOM05D002009 ORTHO05D006831 5.8e-39 165.6 174 51.7
CiPaw.07G018700 Carya illinoinensis HOM05D002009 ORTHO05D006831 5.8e-39 165.6 162 54.9
Sabra13G0024400 Salix brachista HOM05D002009 ORTHO05D006831 5.8e-39 165.6 168 52.4
FvH4_6g06120 Fragaria vesca HOM05D002009 ORTHO05D006831 7.6e-39 165.2 187 49.2
Psat0s2197g0080 Pisum sativum HOM05D002009 ORTHO05D006831 9.9e-39 164.9 187 45.5
PSO210G3028 Papaver somniferum HOM05D002009 ORTHO05D006831 1.7e-38 164.1 176 47.2
AUR62005157 Chenopodium quinoa HOM05D002009 ORTHO05D006831 2.2e-38 163.7 193 46.1
Lsat_1_v5_gn_9_86800 Lactuca sativa HOM05D002009 ORTHO05D006831 2.2e-38 163.7 189 48.7
Ca_05812_v3 Cicer arietinum L. HOM05D002009 ORTHO05D006831 2.9e-38 163.3 185 44.9
AUR62000811 Chenopodium quinoa HOM05D002009 ORTHO05D006831 3.8e-38 162.9 199 48.2
MD12G1217900 Malus domestica HOM05D002009 ORTHO05D006831 3.8e-38 162.9 196 47.4
Thecc.05G301300 Theobroma cacao HOM05D002009 ORTHO05D006831 4.9e-38 162.5 197 48.7
Eucgr.B01945 Eucalyptus grandis HOM05D002009 ORTHO05D006831 6.4e-38 162.2 236 44.1
Oeu002661.1 Olea europaea HOM05D002009 ORTHO05D006831 1.1e-37 161.4 179 50.8
Glyma.03G237200 Glycine max HOM05D002009 ORTHO05D006831 1.9e-37 160.6 185 45.4
Sed0001711 Sechium edule HOM05D002009 ORTHO05D006831 2.4e-37 160.2 211 42.7
Sc09g0003130 Simmondsia chinensis HOM05D002009 ORTHO05D006831 2.4e-37 160.2 208 45.7
FAN09G2733 Fragaria x ananassa HOM05D002009 ORTHO05D006831 3.2e-37 159.8 180 47.8
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 5.4e-37 159.1 198 47.0
PSO170G1195 Papaver somniferum HOM05D002009 ORTHO05D006831 5.4e-37 159.1 153 52.3
ECA236G3568 Erigeron canadensis HOM05D002009 ORTHO05D006831 1.2e-36 157.9 235 40.4
Phvul.006G091300 Phaseolus vulgaris HOM05D002009 ORTHO05D006831 7.9e-36 155.2 142 52.8
Peaxi162Scf00037g00637 Petunia axillaris HOM05D002009 ORTHO05D006831 1.0e-35 154.8 168 50.0
Ah.04g160310 Amaranthus hybridus HOM05D002009 ORTHO05D006831 1.1e-34 151.4 172 48.8
Haze_04184 Corylus avellana HOM05D002009 ORTHO05D006831 1.5e-34 151.0 233 40.3
Lalb_Chr18g0045671 Lupinus albus HOM05D002009 ORTHO05D006831 4.3e-34 149.4 174 44.3
ClCG02G015610 Citrullus lanatus HOM05D002009 ORTHO05D006831 1.3e-33 147.9 218 40.4
CsaV3_2G006490 Cucumis sativus L. HOM05D002009 ORTHO05D006831 2.8e-33 146.7 205 41.5
Lj1g0026508 Lotus japonicus HOM05D002009 ORTHO05D006831 1.8e-32 144.1 124 57.3
THA.LOC104823729 Tarenaya hassleriana HOM05D002009 ORTHO05D006831 1.8e-32 144.1 139 54.0
Hund07076 Selenicereus undatus HOM05D002009 ORTHO05D006831 4.0e-32 142.9 168 46.4
arahy.Tifrunner.gnm1.ann1.V7WSHY Arachis hypogaea HOM05D002009 ORTHO05D006831 9.0e-32 141.7 236 36.4
CAN.G1034.31 Capsicum annuum HOM05D002009 ORTHO05D006831 1.2e-31 141.4 171 46.8
Sopen01g042770 Solanum pennellii HOM05D002009 ORTHO05D006831 1.2e-31 141.4 171 46.8
arahy.Tifrunner.gnm1.ann1.UY60S3 Arachis hypogaea HOM05D002009 ORTHO05D006831 2.0e-31 140.6 236 36.0
SGA_v2.0_scaffold80G25788 Striga asiatica HOM05D002009 ORTHO05D006831 1.3e-30 137.9 177 46.3
DCAR_001814 Daucus carota HOM05D002009 ORTHO05D006831 2.9e-30 136.7 209 42.1
ATR0706G256 Amborella trichopoda HOM05D002009 ORTHO05D006831 3.8e-30 136.3 249 37.3
Sp5g22500 Schrenkiella parvula HOM05D002009 ORTHO05D006831 3.8e-30 136.3 169 47.3
Solyc01g099220.3 Solanum lycopersicum HOM05D002009 ORTHO05D006831 3.8e-30 136.3 171 45.6
Aa31LG2G11690 Aethionema arabicum HOM05D000208 ORTHO05D006831 1.1e-29 134.8 162 46.3
A07p32520 Brassica napus HOM05D002009 ORTHO05D006831 1.9e-29 134.0 169 46.7
Cc02_g33310 Coffea canephora HOM05D002009 ORTHO05D006831 1.9e-29 134.0 168 48.2
BcaB03g15362 Brassica carinata HOM05D002009 ORTHO05D006831 2.4e-29 133.7 169 47.9
C06p38660 Brassica napus HOM05D002009 ORTHO05D006831 3.2e-29 133.3 169 46.2
BraA07t30876Z Brassica rapa HOM05D002009 ORTHO05D006831 4.2e-29 132.9 170 45.3
BolC6t38955H Brassica oleracea HOM05D002009 ORTHO05D006831 1.6e-28 131.0 169 46.2
MSTRG.27991 Avicennia marina HOM05D002009 ORTHO05D006831 7.9e-28 128.6 176 43.8
AL2G26100 Arabidopsis lyrata HOM05D002009 ORTHO05D006831 1.0e-27 128.3 231 38.1
Carub.0002s1383 Capsella rubella HOM05D002009 ORTHO05D006831 6.7e-27 125.6 143 48.3
AT1G67500 Arabidopsis thaliana HOM05D002009 ORTHO05D006831 1.5e-26 124.4 144 46.5
CARHR060080 Cardamine hirsuta HOM05D002009 ORTHO05D006831 3.3e-26 123.2 169 44.4
Thhalv10017996m.g Eutrema salsugineum HOM05D002009 ORTHO05D006831 1.6e-25 120.9 195 40.0
Migut.N02062 Erythranthe guttata HOM05D002009 ORTHO05D006831 1.4e-24 117.9 176 42.6
SHI18137 Sapria himalayana HOM05D002009 ORTHO05D006831 1.4e-24 117.9 225 35.6
unitig_0.g2310 Utricularia gibba HOM05D002009 ORTHO05D006831 6.9e-24 115.5 151 45.7
COL.COLO4_13444 Corchorus olitorius HOM05D002009 ORTHO05D006831 7.6e-23 112.1 106 59.4
QL03p054350 Quercus lobata HOM05D003219 ORTHO05D005190 7.6e-23 112.1 125 49.6
SEGI_14509 Sequoiadendron giganteum HOM05D002009 ORTHO05D006831 1.3e-17 94.7 189 36.0
FAN05G0625 Fragaria x ananassa HOM05D002009 ORTHO05D006831 2.8e-17 93.6 117 47.0
HPP92_001324 Vanilla planifolia HOM05D002009 ORTHO05D006831 2.8e-17 93.6 153 37.3
EL10Ac4g09369 Beta vulgaris HOM05D002009 ORTHO05D006831 5.9e-15 85.9 206 30.1
Zm00001eb330170 Zea mays HOM05D002009 ORTHO05D006831 7.6e-15 85.5 133 38.3
MD05G1053500 Malus domestica HOM05D005153 ORTHO05D006817 3.3e-10 70.1 81 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1967 Anthoceros agrestis HOM05D002009 ORTHO05D006831 5.7e-10 69.3 122 34.4
Mapoly0082s0049 Marchantia polymorpha HOM05D002009 ORTHO05D006831 4.8e-09 66.2 83 37.3
Pp3c2_33440 Physcomitrium patens HOM05D002009 ORTHO05D006831 1.2e-07 61.6 119 34.5
Gohir.D08G227001 Gossypium hirsutum HOM05D002009 ORTHO05D006831 1.5e-07 61.2 46 63.0
Cpa.g.sc48.65 Carica papaya HOM05D002009 ORTHO05D006817 7.7e-07 58.9 83 41.0
MD05G1053400 Malus domestica HOM05D002009 ORTHO05D006831 1.0e-06 58.5 96 37.5
Migut.N02070 Erythranthe guttata HOM05D002009 ORTHO05D006831 6.5e-06 55.8 64 48.4


User provided reference genes

Program Settings