Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 6.0e-250 867.1 449 100.0
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 4.1e-206 721.5 524 75.6
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 7.3e-163 577.8 449 71.9
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 1.6e-154 550.1 373 74.8
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 2.8e-146 522.7 381 70.9
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 6.9e-145 518.1 423 66.0
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 2.4e-142 509.6 417 66.2
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 9.3e-142 507.7 386 69.7
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 7.8e-141 504.6 345 76.2
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 1.7e-140 503.4 460 60.9
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 5.6e-139 498.4 407 66.6
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 5.6e-139 498.4 435 64.1
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 1.3e-138 497.3 383 67.6
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 1.3e-138 497.3 449 60.4
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 6.2e-138 495.0 379 67.0
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 4.0e-137 492.3 370 70.8
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 6.9e-137 491.5 370 70.5
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 1.2e-136 490.7 370 70.5
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 5.8e-136 488.4 372 67.5
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 5.8e-136 488.4 409 65.3
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 8.4e-135 484.6 375 68.0
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 1.1e-134 484.2 375 68.8
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 1.1e-134 484.2 423 62.6
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 1.4e-134 483.8 454 60.4
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 7.1e-134 481.5 410 65.4
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 9.3e-134 481.1 442 61.3
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 1.2e-133 480.7 425 61.2
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 2.1e-133 479.9 358 70.4
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 2.7e-133 479.6 368 65.5
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 4.6e-133 478.8 411 64.5
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 7.9e-133 478.0 433 60.5
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 1.8e-132 476.9 409 63.6
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 1.1e-131 474.2 371 67.9
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 7.4e-131 471.5 386 65.0
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 1.3e-130 470.7 405 64.0
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 6.2e-130 468.4 438 61.0
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 8.1e-130 468.0 349 68.8
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 1.4e-129 467.2 438 60.7
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 2.4e-129 466.5 411 62.3
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 5.3e-129 465.3 377 65.0
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 7.6e-128 461.5 350 69.1
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 7.6e-128 461.5 381 67.2
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 9.9e-128 461.1 343 69.4
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 1.7e-127 460.3 414 62.6
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 8.4e-127 458.0 345 70.1
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 8.4e-127 458.0 433 59.8
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 1.4e-126 457.2 381 65.1
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 1.9e-126 456.8 418 62.2
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 4.2e-126 455.7 422 61.1
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 7.1e-126 454.9 442 59.5
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 9.3e-126 454.5 396 63.6
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 1.2e-125 454.1 422 60.9
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 2.7e-125 453.0 376 61.4
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 3.5e-125 452.6 405 60.0
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 3.5e-125 452.6 420 61.2
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.0e-124 451.1 420 61.2
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 1.0e-124 451.1 424 60.8
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 1.3e-124 450.7 360 65.6
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 3.9e-124 449.1 427 60.2
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 3.9e-124 449.1 375 62.9
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 5.1e-124 448.7 337 68.2
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 8.7e-124 448.0 379 62.5
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 1.9e-123 446.8 359 65.5
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 1.9e-123 446.8 335 68.7
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 1.9e-123 446.8 349 67.6
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 4.3e-123 445.7 455 56.7
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 5.6e-123 445.3 372 64.0
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 7.4e-123 444.9 359 65.7
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 1.3e-122 444.1 433 59.4
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 1.6e-122 443.7 414 60.9
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 6.2e-122 441.8 465 57.2
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 1.4e-121 440.7 384 63.3
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 1.8e-121 440.3 380 62.9
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 2.4e-121 439.9 402 60.4
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 2.4e-121 439.9 368 63.3
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 6.9e-121 438.3 350 66.9
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 4.5e-120 435.6 434 56.5
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 5.8e-120 435.3 383 61.9
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 5.8e-120 435.3 371 62.3
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 5.8e-120 435.3 367 62.1
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 7.6e-120 434.9 359 66.6
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 1.3e-119 434.1 373 62.5
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 1.1e-118 431.0 384 61.7
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 1.1e-118 431.0 313 73.5
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 3.2e-118 429.5 349 64.2
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 7.1e-118 428.3 383 61.6
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.9e-116 422.5 378 61.1
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 1.5e-115 420.6 349 63.9
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.5e-115 420.6 341 63.3
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 1.4e-113 414.1 369 61.5
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.5e-112 409.1 345 61.7
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 7.7e-112 408.3 296 70.6
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 6.5e-111 405.2 468 54.3
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 4.7e-101 372.5 394 55.3
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 2.3e-92 343.6 241 73.0
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 3.1e-89 333.2 350 55.4
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 3.8e-87 326.2 384 48.7
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 1.3e-82 311.2 365 48.8
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 8.3e-82 308.5 268 61.9
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 9.4e-78 295.0 216 73.6
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 2.8e-74 283.5 204 71.1
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 3.4e-67 260.0 210 67.1
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 2.4e-65 253.8 349 44.1
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 8.6e-63 245.4 390 40.5
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 2.5e-62 243.8 350 40.9
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 9.2e-57 225.3 257 53.3
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.7e-56 223.8 349 40.7
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 2.3e-55 220.7 221 53.4
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 3.6e-37 160.2 178 52.8
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 3.6e-29 133.7 82 79.3
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 4.4e-27 126.7 249 32.9
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 1.7e-26 124.8 102 62.7
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 1.1e-25 122.1 93 65.6
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 3.2e-25 120.6 129 50.4
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 4.9e-18 96.7 156 43.6
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 9.3e-17 92.4 112 45.5
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 1.6e-16 91.7 119 47.1
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 3.3e-14 84.0 361 26.3
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.8e-13 80.9 354 27.7
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 9.6e-06 55.8 36 66.7


User provided reference genes

Program Settings