Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 1.4e-136 489.6 239 100.0
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 9.1e-120 433.7 242 90.5
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 3.1e-96 355.5 236 73.3
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 7.0e-88 327.8 224 71.4
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.3e-86 323.6 232 65.5
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 1.1e-85 320.5 243 66.7
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 3.3e-85 318.9 239 68.2
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 7.2e-85 317.8 239 66.9
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 1.6e-84 316.6 246 65.0
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 2.0e-82 309.7 229 65.9
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 1.7e-81 306.6 239 63.6
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 2.2e-81 306.2 221 67.4
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 2.8e-81 305.8 247 64.4
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 8.3e-81 304.3 248 62.5
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 1.6e-79 300.1 241 63.1
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 7.8e-79 297.7 232 63.8
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.3e-78 296.2 239 63.2
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 5.0e-78 295.0 247 61.5
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 6.6e-78 294.7 241 63.1
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 1.5e-77 293.5 238 62.2
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 3.3e-77 292.4 205 67.8
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 4.3e-77 292.0 234 61.1
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 5.6e-77 291.6 219 67.1
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 5.6e-77 291.6 223 63.7
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 7.3e-77 291.2 221 67.0
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 7.3e-77 291.2 244 60.7
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 1.2e-76 290.4 232 60.8
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 2.1e-76 289.7 225 62.2
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 2.8e-76 289.3 250 58.8
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 3.6e-76 288.9 221 66.5
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.8e-75 286.6 242 61.2
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.2e-75 285.0 224 63.4
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 8.9e-75 284.3 235 61.3
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 8.9e-75 284.3 231 59.7
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 1.2e-74 283.9 245 58.8
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 1.5e-74 283.5 243 59.7
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 2.0e-74 283.1 248 60.1
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 2.6e-74 282.7 219 63.0
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 9.8e-74 280.8 242 60.7
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 9.8e-74 280.8 208 63.0
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 1.3e-73 280.4 221 61.5
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 3.7e-73 278.9 250 57.6
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 8.3e-73 277.7 221 61.1
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.4e-72 276.9 238 57.6
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 1.4e-72 276.9 247 57.5
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 1.4e-72 276.9 246 57.3
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 1.8e-72 276.6 254 56.7
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 2.4e-72 276.2 208 63.0
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 3.2e-72 275.8 246 56.9
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 4.1e-72 275.4 247 56.7
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 5.4e-72 275.0 244 59.8
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 5.4e-72 275.0 226 59.3
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 7.0e-72 274.6 237 56.5
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 9.2e-72 274.2 222 60.8
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 9.2e-72 274.2 214 62.1
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 4.6e-71 271.9 226 59.3
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 4.6e-71 271.9 229 58.5
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 7.8e-71 271.2 206 62.6
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 2.3e-70 269.6 233 60.9
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 2.3e-70 269.6 220 60.0
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 2.3e-70 269.6 242 58.7
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.0e-70 268.5 212 60.4
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 1.5e-69 266.9 218 60.6
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 5.6e-69 265.0 236 55.5
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 1.6e-68 263.5 260 55.0
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 4.7e-68 261.9 223 59.2
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 1.4e-67 260.4 220 59.5
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 3.4e-66 255.8 260 54.2
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 1.3e-65 253.8 221 59.3
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 9.2e-64 247.7 212 56.6
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 1.6e-63 246.9 201 58.7
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 3.3e-61 239.2 219 56.2
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 3.3e-61 239.2 226 54.0
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.4e-59 233.8 231 51.1
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 4.0e-59 232.3 205 54.6
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 6.8e-59 231.5 221 52.9
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 9.9e-58 227.6 211 51.7
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 5.4e-56 221.9 197 54.3
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 3.5e-55 219.2 207 51.2
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 3.5e-55 219.2 205 52.7
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 7.8e-55 218.0 207 50.7
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 1.0e-54 217.6 248 47.6
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 3.0e-54 216.1 210 53.8
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 1.1e-53 214.2 200 53.5
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.5e-53 213.8 208 49.5
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 1.5e-53 213.8 259 46.7
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 4.3e-53 212.2 202 51.5
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 2.8e-52 209.5 263 45.2
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 4.7e-52 208.8 259 45.9
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 8.1e-52 208.0 264 46.2
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 1.1e-51 207.6 211 48.8
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 1.8e-51 206.8 250 46.4
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 8.9e-51 204.5 261 44.4
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 4.4e-50 202.2 238 50.0
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 7.6e-50 201.4 196 52.0
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 8.4e-49 198.0 275 45.1
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 1.1e-48 197.6 241 45.6
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 1.1e-48 197.6 241 45.6
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 1.1e-48 197.6 241 45.6
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 1.4e-48 197.2 241 45.6
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 1.4e-48 197.2 241 45.6
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 3.2e-48 196.1 237 46.4
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 9.2e-48 194.5 216 47.7
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 6.0e-47 191.8 275 43.3
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 4.9e-41 172.2 203 45.8
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 6.4e-41 171.8 199 45.7
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 1.9e-40 170.2 122 69.7
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 5.4e-40 168.7 151 55.6
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.6e-39 167.2 198 46.0
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 2.3e-38 163.3 201 46.3
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 1.1e-37 161.0 134 59.7
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.9e-37 160.2 116 65.5
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 4.3e-37 159.1 205 44.9
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 5.8e-34 148.7 186 46.2
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 2.8e-28 129.8 150 48.0
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 6.9e-27 125.2 212 36.3
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 2.2e-25 120.2 227 34.8
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 6.4e-25 118.6 213 32.9
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 9.3e-24 114.8 231 32.5
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.5e-23 112.8 213 36.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.8e-22 110.5 217 36.4
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 2.3e-22 110.2 228 31.6
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 1.8e-19 100.5 224 33.0
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 6.9e-19 98.6 117 42.7
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 5.1e-14 82.4 56 62.5
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 1.6e-12 77.4 218 30.3
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 1.4e-11 74.3 58 51.7
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 3.1e-11 73.2 100 39.0
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 5.3e-11 72.4 160 33.1
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 2.0e-10 70.5 158 34.2
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 1.2e-07 61.2 130 28.5
A02p01110 Brassica napus HOM05D005944 ORTHO05D007188 8.8e-06 55.1 33 69.7


User provided reference genes

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