Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0144000 Rhododendron simsii HOM05D033466 ORTHO05D000228 1.9e-92 342.4 163 100.0
Rhsim09G0069700 Rhododendron simsii HOM05D000350 ORTHO05D000228 4.0e-34 148.7 140 59.3
MSTRG.11569 Avicennia marina HOM05D000350 ORTHO05D000228 8.0e-19 97.8 115 51.3
CSS0007455 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.0e-18 97.4 142 42.3
CSS0030311 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.0e-18 97.4 142 42.3
TAR629G0849 Trochodendron aralioides HOM05D000350 ORTHO05D000228 4.0e-18 95.5 136 41.2
Oeu038393.1 Olea europaea HOM05D000350 ORTHO05D000228 1.2e-17 94.0 112 48.2
Nitab4.5_0011777g0010 Nicotiana tabacum HOM05D000350 ORTHO05D000228 2.0e-17 93.2 146 42.5
SalBow5G3801 Salvia bowleyana HOM05D000350 ORTHO05D000228 2.0e-17 93.2 109 51.4
Nitab4.5_0001089g0050 Nicotiana tabacum HOM05D000350 ORTHO05D000228 5.8e-17 91.7 146 41.8
AL6G34540 Arabidopsis lyrata HOM05D000350 ORTHO05D000228 9.8e-17 90.9 116 44.8
TAR622G0707 Trochodendron aralioides HOM05D000350 ORTHO05D000228 9.8e-17 90.9 109 48.6
MBI03_g13826_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 2.9e-16 89.4 114 46.5
TAR371G1151 Trochodendron aralioides HOM05D000350 ORTHO05D000228 2.9e-16 89.4 111 48.6
unitig_26.g10117 Utricularia gibba HOM05D000350 ORTHO05D000228 2.9e-16 89.4 119 45.4
Ciclev10032441m.g Citrus clementina HOM05D000350 ORTHO05D000228 3.7e-16 89.0 120 43.3
ClCG01G008210 Citrullus lanatus HOM05D000350 ORTHO05D000228 1.1e-15 87.4 120 45.8
Dinv18421 Davidia involucrata HOM05D000350 ORTHO05D000228 1.9e-15 86.7 142 40.8
Peaxi162Scf00021g00213 Petunia axillaris HOM05D000350 ORTHO05D000228 5.4e-15 85.1 126 40.5
Sed0007987 Sechium edule HOM05D000350 ORTHO05D000228 5.4e-15 85.1 125 42.4
Sopen04g004310 Solanum pennellii HOM05D000350 ORTHO05D000228 5.4e-15 85.1 125 42.4
Atru.chr11.1115 Acer truncatum HOM05D000350 ORTHO05D000228 7.0e-15 84.7 117 45.3
CARHR190260 Cardamine hirsuta HOM05D000350 ORTHO05D000228 7.0e-15 84.7 105 45.7
unitig_22.g5318 Utricularia gibba HOM05D000350 ORTHO05D000228 7.0e-15 84.7 119 42.0
Lj3P847T38 Lonicera japonica HOM05D000350 ORTHO05D000228 9.2e-15 84.3 114 50.0
MBI06_g27501_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 9.2e-15 84.3 117 42.7
Migut.O00286 Erythranthe guttata HOM05D000350 ORTHO05D000228 1.2e-14 84.0 120 47.5
AT5G23280 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 1.6e-14 83.6 118 43.2
Carub.0006s2105 Capsella rubella HOM05D000350 ORTHO05D000228 1.6e-14 83.6 123 39.8
DCAR_026883 Daucus carota HOM05D000350 ORTHO05D000228 1.6e-14 83.6 109 46.8
Sp2g23870 Schrenkiella parvula HOM05D000350 ORTHO05D000228 1.6e-14 83.6 116 45.7
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.7e-14 82.8 127 44.1
VMungo0720G1336 Vigna mungo HOM05D000350 ORTHO05D000228 2.7e-14 82.8 115 43.5
Thhalv10004796m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 3.5e-14 82.4 118 43.2
SGA_v2.0_scaffold25G10723 Striga asiatica HOM05D000350 ORTHO05D000228 3.5e-14 82.4 114 47.4
Nitab4.5_0000069g0220 Nicotiana tabacum HOM05D000350 ORTHO05D000228 4.6e-14 82.0 104 49.0
Nitab4.5_0004301g0070 Nicotiana tabacum HOM05D000350 ORTHO05D000228 4.6e-14 82.0 104 49.0
BcaC04g23486 Brassica carinata HOM05D000350 ORTHO05D000228 6.0e-14 81.6 114 43.0
MELO3C025049.2 Cucumis melo HOM05D000350 ORTHO05D000228 6.0e-14 81.6 122 42.6
Gohir.D02G189100 Gossypium hirsutum HOM05D000350 ORTHO05D000228 7.8e-14 81.3 114 43.9
Gorai.005G211900 Gossypium raimondii HOM05D000350 ORTHO05D000228 7.8e-14 81.3 114 43.9
CDE02G4099 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 1.0e-13 80.9 110 42.7
Gohir.A03G165900 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.0e-13 80.9 115 43.5
Lj5g0018781 Lotus japonicus HOM05D000350 ORTHO05D000228 1.0e-13 80.9 106 47.2
unitig_8.g3768 Utricularia gibba HOM05D000350 ORTHO05D000228 1.0e-13 80.9 121 43.8
THA.LOC104800669 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 1.3e-13 80.5 126 40.5
Gohir.D12G136600 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.7e-13 80.1 124 40.3
DCAR_002594 Daucus carota HOM05D000350 ORTHO05D000228 3.0e-13 79.3 114 42.1
Gorai.008G147800 Gossypium raimondii HOM05D000350 ORTHO05D000228 3.0e-13 79.3 124 39.5
Solyc04g009180.3 Solanum lycopersicum HOM05D000350 ORTHO05D000228 3.0e-13 79.3 112 42.9
Thecc.02G156700 Theobroma cacao HOM05D000350 ORTHO05D000228 3.0e-13 79.3 114 44.7
Gohir.A12G133100 Gossypium hirsutum HOM05D000350 ORTHO05D000228 3.9e-13 79.0 124 39.5
unitig_749.g13723 Utricularia gibba HOM05D000350 ORTHO05D000228 3.9e-13 79.0 121 42.1
PSO782G4042 Papaver somniferum HOM05D000350 ORTHO05D000228 6.6e-13 78.2 135 37.0
arahy.Tifrunner.gnm1.ann1.W24P9U Arachis hypogaea HOM05D000350 ORTHO05D000228 8.6e-13 77.8 115 45.2
Lsat_1_v5_gn_4_64660 Lactuca sativa HOM05D000350 ORTHO05D000228 8.6e-13 77.8 109 46.8
PSO063G5927 Papaver somniferum HOM05D000350 ORTHO05D000228 8.6e-13 77.8 133 36.1
Solyc01g008230.4 Solanum lycopersicum HOM05D000350 ORTHO05D000228 8.6e-13 77.8 115 47.0
Sopen01g003750 Solanum pennellii HOM05D000350 ORTHO05D000228 8.6e-13 77.8 115 47.0
Actinidia25178 Actinidia chinensis HOM05D000350 ORTHO05D000228 1.1e-12 77.4 95 48.4
Os02g0828566 Oryza sativa ssp. japonica HOM05D000350 ORTHO05D000228 1.1e-12 77.4 119 42.9
MELO3C025357.2 Cucumis melo HOM05D000350 ORTHO05D000228 1.5e-12 77.0 125 40.8
Lj6C716T2 Lonicera japonica HOM05D000350 ORTHO05D000228 1.5e-12 77.0 102 43.1
CsaV3_5G020710 Cucumis sativus L. HOM05D000350 ORTHO05D000228 1.9e-12 76.6 125 40.8
Gohir.A13G061400 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.9e-12 76.6 111 45.0
Psat6g233680 Pisum sativum HOM05D000350 ORTHO05D000228 1.9e-12 76.6 110 42.7
Duzib248G0707 Durio zibethinus HOM05D000350 ORTHO05D000228 2.5e-12 76.3 116 42.2
Medtr1g114380 Medicago truncatula HOM05D000350 ORTHO05D000228 2.5e-12 76.3 106 41.5
Glyma.09G284300 Glycine max HOM05D000350 ORTHO05D000228 3.3e-12 75.9 105 41.9
Glyma.09G284500 Glycine max HOM05D000350 ORTHO05D000228 3.3e-12 75.9 105 41.9
Glyma.10G285900 Glycine max HOM05D000350 ORTHO05D000228 3.3e-12 75.9 106 42.5
Lalb_Chr02g0143611 Lupinus albus HOM05D000350 ORTHO05D000228 3.3e-12 75.9 103 47.6
TPR.G4077 Trifolium pratense HOM05D000350 ORTHO05D000228 3.3e-12 75.9 127 37.0
C09p07840 Brassica napus HOM05D000350 ORTHO05D000228 4.3e-12 75.5 103 47.6
BolC9t53700H Brassica oleracea HOM05D000350 ORTHO05D000228 4.3e-12 75.5 103 47.6
Lsat_1_v5_gn_3_36601 Lactuca sativa HOM05D000350 ORTHO05D000228 4.3e-12 75.5 147 36.1
Phvul.007G015000 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 4.3e-12 75.5 114 41.2
Gorai.013G068600 Gossypium raimondii HOM05D000350 ORTHO05D000228 5.6e-12 75.1 112 45.5
BcaB04g19882 Brassica carinata HOM05D000350 ORTHO05D000228 9.5e-12 74.3 104 46.2
Cc07_g19520 Coffea canephora HOM05D000350 ORTHO05D000228 9.5e-12 74.3 127 40.2
COL.COLO4_33084 Corchorus olitorius HOM05D000350 ORTHO05D000228 9.5e-12 74.3 111 44.1
Sabra05G0074400 Salix brachista HOM05D000350 ORTHO05D000228 9.5e-12 74.3 131 40.5
BcaB04g19884 Brassica carinata HOM05D000350 ORTHO05D000228 1.2e-11 73.9 104 45.2
A09p07030 Brassica napus HOM05D000350 ORTHO05D000228 1.2e-11 73.9 103 46.6
A06p34240 Brassica napus HOM05D000350 ORTHO05D000228 1.6e-11 73.6 115 40.9
BraA06t26356Z Brassica rapa HOM05D000350 ORTHO05D000228 1.6e-11 73.6 115 40.9
HanXRQChr17g0541411 Helianthus annuus HOM05D000350 ORTHO05D000228 1.6e-11 73.6 115 40.0
Gohir.D13G060500 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.8e-11 72.8 112 44.6
Sc10g0006860 Simmondsia chinensis HOM05D000350 ORTHO05D000228 2.8e-11 72.8 121 41.3
Glyma.20G001600 Glycine max HOM05D000350 ORTHO05D000228 3.6e-11 72.4 107 41.1
Phvul.003G003300 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 4.7e-11 72.0 102 47.1
BraA09t36351Z Brassica rapa HOM05D000350 ORTHO05D000228 6.2e-11 71.6 104 45.2
Lalb_Chr06g0163911 Lupinus albus HOM05D000350 ORTHO05D000228 6.2e-11 71.6 108 42.6
Duzib052G0698 Durio zibethinus HOM05D000350 ORTHO05D000228 8.0e-11 71.2 115 44.3
Hma1.2p1_0513F.1_g169450 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 8.0e-11 71.2 142 35.9
TWI53G0636 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 8.0e-11 71.2 125 38.4
HPP92_005059 Vanilla planifolia HOM05D000350 ORTHO05D000228 1.4e-10 70.5 122 37.7
VMungo0251G3191 Vigna mungo HOM05D000350 ORTHO05D000228 1.4e-10 70.5 102 46.1
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 1.8e-10 70.1 111 45.9
Lj6C711T10 Lonicera japonica HOM05D000350 ORTHO05D000228 1.8e-10 70.1 102 40.2
Potri.005G090300 Populus trichocarpa HOM05D000350 ORTHO05D000228 1.8e-10 70.1 131 38.9
C07p44280 Brassica napus HOM05D000350 ORTHO05D000228 3.1e-10 69.3 112 39.3
BolC7t44951H Brassica oleracea HOM05D000350 ORTHO05D000228 3.1e-10 69.3 112 39.3
QL06p051233 Quercus lobata HOM05D000350 ORTHO05D000228 3.1e-10 69.3 109 40.4
CiPaw.05G171000 Carya illinoinensis HOM05D000350 ORTHO05D000228 4.0e-10 68.9 128 37.5
Peaxi162Scf00681g00014 Petunia axillaris HOM05D000350 ORTHO05D000228 5.2e-10 68.6 87 48.3
Cpa.g.sc60.75 Carica papaya HOM05D000350 ORTHO05D000228 6.8e-10 68.2 116 40.5
CDE04G2137 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 6.8e-10 68.2 100 44.0
ECA246G0165 Erigeron canadensis HOM05D000350 ORTHO05D000228 6.8e-10 68.2 130 36.9
Duzib132G0755 Durio zibethinus HOM05D000350 ORTHO05D000228 8.9e-10 67.8 113 43.4
Potri.007G074028 Populus trichocarpa HOM05D000350 ORTHO05D000228 8.9e-10 67.8 131 40.5
CiPaw.06G062000 Carya illinoinensis HOM05D000350 ORTHO05D000228 1.5e-09 67.0 110 40.9
Sed0018768 Sechium edule HOM05D000350 ORTHO05D000228 1.5e-09 67.0 116 38.8
A02p41040 Brassica napus HOM05D000350 ORTHO05D000228 2.0e-09 66.6 110 43.6
Lalb_Chr10g0094891 Lupinus albus HOM05D000350 ORTHO05D000228 2.0e-09 66.6 123 38.2
arahy.Tifrunner.gnm1.ann1.R5BCDI Arachis hypogaea HOM05D000350 ORTHO05D000228 2.6e-09 66.2 119 42.0
ATR0618G251 Amborella trichopoda HOM05D000350 ORTHO05D000228 3.4e-09 65.9 112 35.7
arahy.Tifrunner.gnm1.ann1.8Y049H Arachis hypogaea HOM05D000350 ORTHO05D000228 3.4e-09 65.9 108 38.9
arahy.Tifrunner.gnm1.ann1.N7WF48 Arachis hypogaea HOM05D000350 ORTHO05D000228 3.4e-09 65.9 108 38.9
Dinv17640 Davidia involucrata HOM05D000350 ORTHO05D000228 3.4e-09 65.9 95 40.0
MD16G1243300 Malus domestica HOM05D000350 ORTHO05D000228 3.4e-09 65.9 130 41.5
TWI77G0512 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 3.4e-09 65.9 122 37.7
BcaC03g18030 Brassica carinata HOM05D000350 ORTHO05D000228 5.8e-09 65.1 110 38.2
C02p60930 Brassica napus HOM05D000350 ORTHO05D000228 5.8e-09 65.1 110 38.2
C03p04240 Brassica napus HOM05D000350 ORTHO05D000228 5.8e-09 65.1 111 39.6
BolC2t12143H Brassica oleracea HOM05D000350 ORTHO05D000228 5.8e-09 65.1 110 38.2
BolC3t12956H Brassica oleracea HOM05D000350 ORTHO05D000228 5.8e-09 65.1 111 39.6
BraA02t09051Z Brassica rapa HOM05D000350 ORTHO05D000228 5.8e-09 65.1 110 42.7
BcaB01g05614 Brassica carinata HOM05D000350 ORTHO05D000228 9.8e-09 64.3 111 40.5
PSO017G4870 Papaver somniferum HOM05D000350 ORTHO05D000228 9.8e-09 64.3 127 34.6
A03p03760 Brassica napus HOM05D000350 ORTHO05D000228 1.3e-08 63.9 110 40.0
BraA03t09723Z Brassica rapa HOM05D000350 ORTHO05D000228 1.3e-08 63.9 110 40.0
Carub.0006s0722 Capsella rubella HOM05D000350 ORTHO05D000228 1.3e-08 63.9 114 39.5
Rhsim02G0115800 Rhododendron simsii HOM05D000067 ORTHO05D001807 1.3e-08 63.9 53 60.4
TWI74G0100 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.3e-08 63.9 123 35.8
Manes.11G108500 Manihot esculenta HOM05D000350 ORTHO05D000228 2.2e-08 63.2 121 39.7
Oeu034420.1 Olea europaea HOM05D000350 ORTHO05D000228 2.9e-08 62.8 96 38.5
PSO170G1224 Papaver somniferum HOM05D000350 ORTHO05D000228 4.9e-08 62.0 129 34.1
AT5G08330 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 6.4e-08 61.6 114 38.6
Sabra07G0062000 Salix brachista HOM05D000350 ORTHO05D000228 6.4e-08 61.6 131 38.9
AL6G18760 Arabidopsis lyrata HOM05D000350 ORTHO05D000228 8.3e-08 61.2 115 38.3
Prupe.1G070500 Prunus persica HOM05D000350 ORTHO05D000228 1.1e-07 60.8 140 42.1
A10p28350 Brassica napus HOM05D000350 ORTHO05D000228 1.4e-07 60.5 108 38.9
BolC9t59604H Brassica oleracea HOM05D000350 ORTHO05D000228 1.4e-07 60.5 108 38.9
Ca_12384_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 1.4e-07 60.5 101 42.6
BcaC03g13223 Brassica carinata HOM05D000350 ORTHO05D000228 1.9e-07 60.1 104 36.5
C02p03540 Brassica napus HOM05D000350 ORTHO05D000228 1.9e-07 60.1 104 36.5
BolC2t06313H Brassica oleracea HOM05D000350 ORTHO05D000228 1.9e-07 60.1 104 36.5
ClCG02G014110 Citrullus lanatus HOM05D000350 ORTHO05D000228 1.9e-07 60.1 127 37.0
Glyma.20G103400 Glycine max HOM05D000350 ORTHO05D000228 1.9e-07 60.1 102 41.2
Cfa008766 Carpinus fangiana HOM05D000350 ORTHO05D000228 3.2e-07 59.3 118 38.1
Medtr1g038650 Medicago truncatula HOM05D000350 ORTHO05D000228 3.2e-07 59.3 108 44.4
BraA02t04952Z Brassica rapa HOM05D000350 ORTHO05D000228 4.1e-07 58.9 103 38.8
MELO3C011754.2 Cucumis melo HOM05D000350 ORTHO05D000228 4.1e-07 58.9 125 35.2
BcaB01g05613 Brassica carinata HOM05D000350 ORTHO05D000228 5.4e-07 58.5 110 40.0
HPP92_008576 Vanilla planifolia HOM05D000350 ORTHO05D000228 5.4e-07 58.5 163 28.8
RhsimUnG0243100 Rhododendron simsii HOM05D033466 ORTHO05D339719 7.1e-07 58.2 53 56.6
Aa31LG3G18240 Aethionema arabicum HOM05D000350 ORTHO05D000228 9.2e-07 57.8 115 35.7
CARHR204770 Cardamine hirsuta HOM05D000350 ORTHO05D000228 9.2e-07 57.8 118 35.6
Hma1.2p1_0044F.1_g026165 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 9.2e-07 57.8 115 35.7
Rhsim02G0116200 Rhododendron simsii HOM05D033466 ORTHO05D338846 9.2e-07 57.8 53 56.6
Sp6g34620 Schrenkiella parvula HOM05D000350 ORTHO05D000228 9.2e-07 57.8 117 36.8
C09p68610 Brassica napus HOM05D000350 ORTHO05D000228 1.2e-06 57.4 108 38.0
CsaV3_5G006010 Cucumis sativus L. HOM05D000350 ORTHO05D000228 1.2e-06 57.4 128 37.5
BraA10t44882Z Brassica rapa HOM05D000350 ORTHO05D000228 1.6e-06 57.0 102 38.2
Thhalv10014503m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 1.6e-06 57.0 118 35.6
Haze_11778 Corylus avellana HOM05D000350 ORTHO05D000228 2.1e-06 56.6 118 37.3
MD13G1238400 Malus domestica HOM05D000350 ORTHO05D000228 2.1e-06 56.6 146 34.2
Sed0007315 Sechium edule HOM05D000350 ORTHO05D000228 2.1e-06 56.6 113 37.2
BcaB08g37263 Brassica carinata HOM05D000350 ORTHO05D000228 2.7e-06 56.2 115 38.3
BcaB08g37264 Brassica carinata HOM05D000350 ORTHO05D000228 2.7e-06 56.2 115 38.3
HanXRQChr14g0454301 Helianthus annuus HOM05D000350 ORTHO05D000228 2.7e-06 56.2 89 33.7


User provided reference genes

Program Settings