Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0131600 Rhododendron simsii HOM05D005293 ORTHO05D006764 3.1e-161 571.6 270 100.0
vmacro01574 Vaccinium macrocarpon HOM05D005293 ORTHO05D006764 3.5e-59 232.6 220 59.1
Cpa.g.sc48.173 Carica papaya HOM05D005293 ORTHO05D006764 5.5e-57 225.3 245 52.7
QL03p014223 Quercus lobata HOM05D005293 ORTHO05D006764 6.1e-56 221.9 207 58.5
Manes.09G177500 Manihot esculenta HOM05D005293 ORTHO05D006764 8.0e-56 221.5 208 58.7
Actinidia16868 Actinidia chinensis HOM05D005293 ORTHO05D006764 1.0e-55 221.1 208 58.2
Oeu016565.1 Olea europaea HOM05D005293 ORTHO05D006764 1.0e-55 221.1 208 56.2
Dinv30900 Davidia involucrata HOM05D005293 ORTHO05D006764 2.3e-55 219.9 202 58.9
COL.COLO4_05541 Corchorus olitorius HOM05D005293 ORTHO05D006764 4.0e-55 219.2 154 71.4
PSO782G5414 Papaver somniferum HOM05D005293 ORTHO05D006764 8.8e-55 218.0 216 54.6
Duzib106G1789 Durio zibethinus HOM05D005293 ORTHO05D006764 1.2e-54 217.6 202 58.9
Gohir.A13G112600 Gossypium hirsutum HOM05D005293 ORTHO05D006764 1.5e-54 217.2 207 57.0
Thecc.05G324300 Theobroma cacao HOM05D005293 ORTHO05D006764 1.5e-54 217.2 207 58.0
GSVIVG01031253001 Vitis vinifera HOM05D005293 ORTHO05D006764 2.0e-54 216.9 207 56.5
CSS0026167 Camellia sinensis var. sinensis HOM05D005293 ORTHO05D006764 2.6e-54 216.5 207 56.5
CSS0034972 Camellia sinensis var. sinensis HOM05D005293 ORTHO05D006764 2.6e-54 216.5 207 56.5
Gohir.D13G115500 Gossypium hirsutum HOM05D005293 ORTHO05D006764 2.6e-54 216.5 207 57.5
Gorai.013G130100 Gossypium raimondii HOM05D005293 ORTHO05D006764 2.6e-54 216.5 207 57.5
DCAR_029342 Daucus carota HOM05D005293 ORTHO05D006764 3.4e-54 216.1 208 55.8
PSO478G4822 Papaver somniferum HOM05D005293 ORTHO05D006764 4.4e-54 215.7 242 50.0
Cfa006727 Carpinus fangiana HOM05D005293 ORTHO05D006764 5.7e-54 215.3 207 56.5
HanXRQChr09g0258691 Helianthus annuus HOM05D005293 ORTHO05D006764 5.7e-54 215.3 198 58.1
THA.LOC104820617 Tarenaya hassleriana HOM05D005293 ORTHO05D006764 5.7e-54 215.3 202 58.9
ECA232G4555 Erigeron canadensis HOM05D005293 ORTHO05D006764 9.8e-54 214.5 207 56.5
Lsat_1_v5_gn_8_116220 Lactuca sativa HOM05D005293 ORTHO05D006764 9.8e-54 214.5 198 58.1
MSTRG.27933 Avicennia marina HOM05D005293 ORTHO05D006764 1.7e-53 213.8 215 53.5
CiPaw.07G030400 Carya illinoinensis HOM05D005293 ORTHO05D006764 1.7e-53 213.8 207 55.1
TAR362G0639 Trochodendron aralioides HOM05D005293 ORTHO05D006764 1.7e-53 213.8 215 55.3
MBI19_g03259_MAGBIO Magnolia biondii HOM05D005293 ORTHO05D006764 4.8e-53 212.2 227 52.4
Prupe.6G311900 Prunus persica HOM05D005293 ORTHO05D006764 1.1e-52 211.1 207 57.0
Atru.chr2.352 Acer truncatum HOM05D005293 ORTHO05D006764 1.4e-52 210.7 207 55.6
Solyc01g100650.3 Solanum lycopersicum HOM05D005293 ORTHO05D006764 1.8e-52 210.3 202 55.9
Migut.N00939 Erythranthe guttata HOM05D005293 ORTHO05D006764 2.4e-52 209.9 215 53.5
MD12G1204700 Malus domestica HOM05D005293 ORTHO05D006764 2.4e-52 209.9 207 54.6
CANSAT54G1875 Cannabis sativa HOM05D005293 ORTHO05D006764 3.1e-52 209.5 207 55.6
Sc16g0009090 Simmondsia chinensis HOM05D005293 ORTHO05D006764 4.1e-52 209.1 241 49.4
RcHm_v2.0_Chr3g0457281 Rosa chinensis HOM05D005293 ORTHO05D006764 7.0e-52 208.4 207 56.5
Ciclev10000268m.g Citrus clementina HOM05D005293 ORTHO05D006764 9.1e-52 208.0 208 54.3
BcaB07g31127 Brassica carinata HOM05D005293 ORTHO05D006764 1.2e-51 207.6 202 54.5
BcaC04g22064 Brassica carinata HOM05D005293 ORTHO05D006764 1.2e-51 207.6 202 54.0
CARHR055040 Cardamine hirsuta HOM05D005293 ORTHO05D006764 1.2e-51 207.6 202 55.0
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.2e-51 207.6 207 53.1
Lj1g0018442 Lotus japonicus HOM05D005293 ORTHO05D006764 1.2e-51 207.6 207 54.6
MELO3C015255.2 Cucumis melo HOM05D005293 ORTHO05D006764 2.0e-51 206.8 207 53.6
Thhalv10023228m.g Eutrema salsugineum HOM05D005293 ORTHO05D006764 2.0e-51 206.8 202 54.5
FvH4_6g07620 Fragaria vesca HOM05D005293 ORTHO05D006764 2.0e-51 206.8 207 56.0
AL1G66250 Arabidopsis lyrata HOM05D005293 ORTHO05D006764 2.7e-51 206.5 196 55.6
Peaxi162Scf01061g00134 Petunia axillaris HOM05D005293 ORTHO05D006764 3.5e-51 206.1 177 59.3
PGR031G3792 Punica granatum HOM05D005293 ORTHO05D006764 3.5e-51 206.1 196 56.6
Glyma.19G228100 Glycine max HOM05D005293 ORTHO05D006764 5.9e-51 205.3 207 54.6
Ca_09301_v3 Cicer arietinum L. HOM05D005293 ORTHO05D006764 7.7e-51 204.9 202 55.0
A09p19050 Brassica napus HOM05D005293 ORTHO05D006764 1.0e-50 204.5 206 52.4
Lj5C327G4 Lonicera japonica HOM05D005293 ORTHO05D006764 1.0e-50 204.5 237 50.2
Nitab4.5_0001338g0090 Nicotiana tabacum HOM05D005293 ORTHO05D006764 1.0e-50 204.5 208 53.8
Sopen01g044170 Solanum pennellii HOM05D005293 ORTHO05D006764 1.0e-50 204.5 202 55.0
FAN05G3958 Fragaria x ananassa HOM05D005293 ORTHO05D006764 1.7e-50 203.8 219 53.4
Aqoxy7G02580 Aquilegia oxysepala HOM05D005293 ORTHO05D006764 2.2e-50 203.4 215 51.6
SGA_v2.0_scaffold37G14600 Striga asiatica HOM05D005293 ORTHO05D006764 2.2e-50 203.4 215 52.1
Carub.0002s0755 Capsella rubella HOM05D005293 ORTHO05D006764 2.9e-50 203.0 196 55.6
CsaV3_1G037900 Cucumis sativus L. HOM05D005293 ORTHO05D006764 2.9e-50 203.0 207 52.2
Sp2g06270 Schrenkiella parvula HOM05D005293 ORTHO05D006764 2.9e-50 203.0 202 53.0
Psat3g012680 Pisum sativum HOM05D005293 ORTHO05D006764 3.8e-50 202.6 207 54.6
ATR0693G200 Amborella trichopoda HOM05D005293 ORTHO05D006764 5.0e-50 202.2 198 52.5
AT1G56500 Arabidopsis thaliana HOM05D005293 ORTHO05D006764 5.0e-50 202.2 196 54.6
FAN14G3496 Fragaria x ananassa HOM05D005293 ORTHO05D006764 5.0e-50 202.2 219 53.0
unitig_746.g26883 Utricularia gibba HOM05D005293 ORTHO05D006764 5.0e-50 202.2 188 55.9
arahy.Tifrunner.gnm1.ann1.KQC6RY Arachis hypogaea HOM05D005293 ORTHO05D006764 6.5e-50 201.8 214 51.9
EL10Ac4g09472 Beta vulgaris HOM05D005293 ORTHO05D006764 8.5e-50 201.4 216 52.8
Nn3g21747 Nelumbo nucifera HOM05D005293 ORTHO05D006764 8.5e-50 201.4 215 54.0
TPR.G1667 Trifolium pratense HOM05D005293 ORTHO05D006764 8.5e-50 201.4 207 53.1
Ah.06g196020 Amaranthus hybridus HOM05D005293 ORTHO05D006764 1.1e-49 201.1 197 54.8
Eucgr.H03302 Eucalyptus grandis HOM05D005293 ORTHO05D006764 1.1e-49 201.1 196 56.1
TWI56G0054 Tripterygium wilfordii HOM05D005293 ORTHO05D006764 1.5e-49 200.7 207 53.6
Phvul.001G224700 Phaseolus vulgaris HOM05D005293 ORTHO05D006764 1.9e-49 200.3 198 55.1
BraA09t37523Z Brassica rapa HOM05D005293 ORTHO05D006764 2.5e-49 199.9 216 50.9
Sed0019289 Sechium edule HOM05D005293 ORTHO05D006764 3.2e-49 199.5 207 52.2
Lalb_Chr04g0260421 Lupinus albus HOM05D005293 ORTHO05D006764 4.2e-49 199.1 207 53.1
Medtr7g112140 Medicago truncatula HOM05D005293 ORTHO05D006764 4.2e-49 199.1 207 54.6
C09p23880 Brassica napus HOM05D005293 ORTHO05D006764 5.5e-49 198.7 217 49.3
Sabra13G0006700 Salix brachista HOM05D005293 ORTHO05D006764 1.2e-48 197.6 201 53.7
BolC9t55314H Brassica oleracea HOM05D005293 ORTHO05D006764 1.6e-48 197.2 217 48.8
AUR62006736 Chenopodium quinoa HOM05D005293 ORTHO05D006764 3.6e-48 196.1 208 51.9
FAN09G2780 Fragaria x ananassa HOM05D005293 ORTHO05D006764 4.7e-48 195.7 220 52.3
AUR62000381 Chenopodium quinoa HOM05D005293 ORTHO05D006764 8.0e-48 194.9 208 51.9
FAN02G4229 Fragaria x ananassa HOM05D005293 ORTHO05D006764 8.0e-48 194.9 194 54.6
Potri.013G007800 Populus trichocarpa HOM05D005293 ORTHO05D006764 8.0e-48 194.9 201 54.7
HPP92_013515 Vanilla planifolia HOM05D005293 ORTHO05D006764 1.4e-47 194.1 215 48.8
ClCG03G017750 Citrullus lanatus HOM05D005293 ORTHO05D006764 1.8e-47 193.7 181 55.2
Zm00001eb014960 Zea mays HOM05D005293 ORTHO05D006764 2.4e-44 183.3 215 46.5
Ah.06g196090 Amaranthus hybridus HOM05D005293 ORTHO05D006764 3.1e-44 183.0 196 50.5
SEGI_20624 Sequoiadendron giganteum HOM05D005293 ORTHO05D006764 2.0e-43 180.3 202 47.0
Hund21866 Selenicereus undatus HOM05D005293 ORTHO05D006764 5.9e-43 178.7 218 48.2
Aa31LG2G11430 Aethionema arabicum HOM05D005293 ORTHO05D006764 1.9e-41 173.7 224 46.9
Hma1.2p1_0008F-1.1_g005500 Hydrangea macrophylla HOM05D005293 ORTHO05D006764 2.5e-41 173.3 173 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2939 Anthoceros agrestis HOM05D005293 ORTHO05D006764 7.2e-41 171.8 240 44.6
Haze_04033 Corylus avellana HOM05D005293 ORTHO05D006764 7.2e-41 171.8 230 43.5
Mapoly0010s0206 Marchantia polymorpha HOM05D005293 ORTHO05D006764 3.6e-40 169.5 202 47.5
Cc00_g28630 Coffea canephora HOM05D005293 ORTHO05D006764 1.4e-39 167.5 173 51.4
Pp3c22_14790 Physcomitrium patens HOM05D005293 ORTHO05D006764 1.3e-37 161.0 240 40.8
CBR_g26293 Chara braunii HOM05D005293 ORTHO05D006764 1.4e-36 157.5 240 42.5
CAN.G1076.25 Capsicum annuum HOM05D005293 ORTHO05D006764 7.3e-33 145.2 141 55.3
SMO358G0750 Selaginella moellendorffii HOM05D005293 ORTHO05D006764 2.6e-30 136.7 170 43.5
Cre13.g586050 Chlamydomonas reinhardtii HOM05D005293 ORTHO05D006764 2.4e-28 130.2 199 39.2
Ca_03080_v3 Cicer arietinum L. HOM05D005293 ORTHO05D006764 1.5e-25 120.9 78 73.1
Nitab4.5_0004525g0070 Nicotiana tabacum HOM05D005293 ORTHO05D006764 1.5e-22 110.9 157 40.8
Manes.10G151302 Manihot esculenta HOM05D005293 ORTHO05D006764 1.3e-21 107.8 130 49.2
Manes.03G089519 Manihot esculenta HOM05D003429 ORTHO05D003873 9.2e-20 101.7 82 65.9
Manes.13G093344 Manihot esculenta HOM05D003429 ORTHO05D003873 9.2e-20 101.7 82 65.9
RcHm_v2.0_Chr4g0393221 Rosa chinensis HOM05D005293 ORTHO05D006764 1.6e-16 90.9 58 70.7
Ca_30515_v3 Cicer arietinum L. HOM05D005293 ORTHO05D006764 1.1e-15 88.2 74 58.1
Rhsim13G0093900 Rhododendron simsii HOM05D005381 ORTHO05D006674 6.6e-10 68.9 46 73.9
vmacro03193 Vaccinium macrocarpon HOM05D005381 ORTHO05D006674 2.5e-09 67.0 39 82.1
Actinidia07131 Actinidia chinensis HOM05D005381 ORTHO05D006674 4.7e-08 62.8 46 65.2
vmacro14783 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 1.1e-07 61.6 52 61.5
CARHR049350 Cardamine hirsuta HOM05D005293 ORTHO05D006764 1.4e-07 61.2 53 58.5
Rhsim01G0259100 Rhododendron simsii HOM05D000200 ORTHO05D000262 4.0e-07 59.7 41 68.3
Dinv19254 Davidia involucrata HOM05D000200 ORTHO05D000262 1.2e-06 58.2 38 71.1
SalBow2G2724 Salvia bowleyana HOM05D000200 ORTHO05D000262 2.6e-06 57.0 39 56.4
CiPaw.03G273000 Carya illinoinensis HOM05D000200 ORTHO05D000262 5.8e-06 55.8 36 66.7
Peaxi162Scf00183g00011 Petunia axillaris HOM05D000200 ORTHO05D000262 5.8e-06 55.8 42 59.5
Haze_11523 Corylus avellana HOM05D000200 ORTHO05D000262 7.6e-06 55.5 81 37.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 9.9e-06 55.1 66 42.4
Haze_11517 Corylus avellana HOM05D000200 ORTHO05D000262 9.9e-06 55.1 81 37.0
Thhalv10003130m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 9.9e-06 55.1 32 68.8


User provided reference genes

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