Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.7e-192 674.1 345 100.0
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.9e-180 634.8 398 84.4
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.6e-180 633.6 399 85.0
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 6.2e-170 600.9 359 87.2
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 8.9e-161 570.5 354 82.8
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.2e-157 560.1 354 81.4
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.5e-157 558.5 354 81.1
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.8e-154 548.1 335 84.2
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.4e-153 546.6 335 82.1
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.4e-153 546.6 358 79.6
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.2e-152 543.5 333 83.5
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 3.4e-152 542.0 356 79.2
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 9.9e-152 540.4 331 82.5
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.2e-151 539.3 337 82.8
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 8.4e-151 537.3 332 81.6
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 1.4e-150 536.6 352 79.3
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.4e-150 536.6 341 80.1
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 2.4e-150 535.8 344 80.2
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 5.4e-150 534.6 327 83.2
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 7.1e-150 534.3 333 81.4
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.1e-149 532.7 329 83.0
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.7e-149 532.3 338 82.0
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 6.0e-149 531.2 338 82.0
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 6.0e-149 531.2 342 78.4
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 7.9e-149 530.8 359 77.2
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 7.9e-149 530.8 350 79.4
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.3e-148 530.0 347 78.4
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.3e-148 530.0 328 82.3
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.8e-148 529.6 338 81.4
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 3.0e-148 528.9 335 81.5
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 3.9e-148 528.5 345 79.4
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.9e-148 528.5 343 78.1
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 6.7e-148 527.7 347 77.8
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 6.7e-148 527.7 333 80.5
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 8.7e-148 527.3 340 79.1
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.5e-147 526.6 327 81.3
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.5e-147 526.6 327 81.3
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.5e-147 526.6 327 81.3
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.5e-147 526.6 336 81.2
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 1.9e-147 526.2 327 81.3
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.9e-147 526.2 327 81.3
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.5e-147 525.8 327 81.7
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.5e-147 525.8 327 81.7
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 2.5e-147 525.8 330 80.9
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 3.3e-147 525.4 327 81.0
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 3.3e-147 525.4 331 80.4
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 4.3e-147 525.0 327 81.3
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 4.3e-147 525.0 326 82.5
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 9.6e-147 523.9 330 80.6
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 2.1e-146 522.7 327 81.0
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 2.8e-146 522.3 329 80.9
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.8e-146 522.3 347 76.9
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.1e-145 520.4 328 79.9
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.1e-145 520.4 345 78.0
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.4e-145 520.0 341 78.3
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.4e-145 519.2 327 81.0
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 3.1e-145 518.8 337 78.6
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 3.1e-145 518.8 347 76.7
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 6.9e-145 517.7 327 80.4
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 6.9e-145 517.7 331 79.5
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 6.9e-145 517.7 327 81.7
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.0e-145 517.3 327 81.7
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.0e-145 517.3 348 77.6
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.2e-144 516.9 331 79.8
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.5e-144 516.5 329 79.6
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.5e-144 516.5 343 77.8
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.8e-144 514.6 327 81.3
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.8e-144 514.6 327 81.3
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 7.6e-144 514.2 347 76.4
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 2.2e-143 512.7 347 76.1
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 2.2e-143 512.7 347 76.1
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 4.9e-143 511.5 347 76.1
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 4.9e-143 511.5 347 76.7
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.4e-143 510.8 349 77.1
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.9e-142 509.6 322 80.1
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 3.2e-142 508.8 347 76.4
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 3.2e-142 508.8 324 79.9
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.2e-142 508.4 330 77.9
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.5e-142 508.1 344 77.9
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 7.1e-142 507.7 330 78.8
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 6.0e-141 504.6 328 79.0
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.3e-140 502.7 325 79.1
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 3.9e-140 501.9 358 73.7
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 5.1e-140 501.5 327 78.9
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 6.7e-140 501.1 347 73.8
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 6.7e-140 501.1 330 78.5
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-139 499.2 330 77.0
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.5e-139 499.2 343 77.0
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 3.3e-139 498.8 309 80.3
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-138 496.9 330 76.7
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 1.6e-138 496.5 329 76.0
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.1e-137 493.8 346 74.3
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 2.4e-137 492.7 343 75.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.1e-137 492.3 345 75.1
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 3.1e-137 492.3 350 73.7
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 4.0e-137 491.9 375 69.9
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 5.3e-137 491.5 333 76.3
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.5e-136 490.0 354 72.6
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 5.8e-136 488.0 346 73.4
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-135 486.9 330 74.5
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 6.5e-135 484.6 301 82.1
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 7.1e-134 481.1 326 75.5
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.6e-133 479.9 372 69.4
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.6e-133 479.9 323 75.5
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 4.3e-131 471.9 297 81.5
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.6e-128 462.6 355 71.0
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 4.5e-128 461.8 411 61.1
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.9e-127 459.1 325 69.2
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 3.8e-127 458.8 268 86.6
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 2.5e-126 456.1 356 68.0
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.2e-125 453.8 342 70.8
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.2e-125 453.8 329 70.5
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 6.1e-125 451.4 287 81.5
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.5e-123 446.8 329 72.3
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.1e-117 426.4 320 68.8
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 4.4e-115 418.7 327 64.2
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 5.7e-115 418.3 309 68.9
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 3.7e-114 415.6 349 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 5.3e-113 411.8 326 64.7
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 5.3e-113 411.8 329 63.8
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.5e-112 410.2 326 64.4
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.0e-112 409.8 327 63.3
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 4.5e-112 408.7 267 79.8
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-111 407.1 364 61.5
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.8e-108 394.4 257 77.8
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.1e-107 394.0 261 78.5
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 3.7e-106 389.0 237 84.4
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.4e-105 386.3 235 83.0
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 2.2e-103 379.8 325 60.0
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-102 376.7 349 59.6
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 7.2e-102 374.8 309 60.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 9.4e-102 374.4 325 58.2
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.0e-100 370.9 235 77.9
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 1.8e-100 370.2 248 77.8
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.3e-98 364.0 347 59.7
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.3e-98 361.7 307 60.6
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.8e-97 360.1 236 77.1
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 2.2e-95 353.2 243 75.7
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.8e-95 352.4 273 63.4
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.6e-91 339.7 350 56.3
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 4.7e-85 318.9 307 54.1
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.1e-85 318.5 243 70.4
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.3e-74 284.3 197 75.6
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.8e-73 280.4 194 76.8
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.7e-66 257.3 285 54.0
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 8.6e-63 245.0 311 46.0
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 4.1e-57 226.1 141 77.3
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 9.2e-57 224.9 208 62.5
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.3e-50 204.5 140 72.9
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.3e-47 194.5 161 60.9
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 4.7e-45 186.0 337 43.3
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.4e-43 179.9 137 70.8
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 9.3e-41 171.8 129 70.5
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 1.2e-40 171.4 235 38.3
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.1e-38 164.9 202 46.5
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.1e-38 164.9 104 76.9
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 2.2e-34 150.6 88 79.5
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.9e-33 147.5 96 80.2
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.6e-32 144.4 172 55.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 4.6e-32 142.9 111 71.2
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 5.6e-30 136.0 76 85.5
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-27 126.7 74 81.1
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.0e-23 113.6 58 89.7
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 3.9e-23 113.2 99 57.6
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 8.7e-23 112.1 76 68.4
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.5e-22 111.3 74 71.6
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-22 110.5 78 64.1
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 9.6e-22 108.6 75 66.7
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 3.1e-20 103.6 77 61.0
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.3e-18 98.2 63 82.5
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.1e-17 95.1 62 77.4
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 9.3e-17 92.0 64 64.1
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.8e-15 87.8 79 67.1
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 3.6e-08 63.5 50 66.0


User provided reference genes

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