Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.1e-267 926.0 459 100.0
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.7e-176 620.9 360 87.5
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.0e-164 582.0 327 87.5
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 7.5e-155 551.2 325 84.0
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.6e-144 516.9 298 86.2
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.5e-142 510.4 326 79.1
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.5e-142 510.4 326 79.1
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 4.3e-142 508.8 325 76.9
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 7.3e-142 508.1 326 79.1
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 6.8e-140 501.5 325 76.6
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 6.8e-140 501.5 329 76.6
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.3e-138 497.3 328 76.5
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.9e-138 496.1 334 74.0
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 3.7e-138 495.7 322 76.4
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 4.9e-138 495.4 326 77.3
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 4.9e-138 495.4 339 75.2
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.4e-137 493.8 326 76.4
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 4.1e-137 492.3 326 75.8
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.2e-136 490.7 325 76.3
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.2e-136 490.7 322 76.4
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.6e-136 490.3 341 73.9
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.7e-136 489.6 341 73.9
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 3.5e-136 489.2 326 76.1
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.7e-135 486.9 349 72.8
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.7e-135 486.9 322 75.2
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.7e-135 486.9 340 73.2
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.3e-135 486.5 337 74.5
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.1e-134 484.2 327 76.8
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.5e-134 483.8 323 76.8
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.3e-134 482.6 329 73.6
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 9.5e-134 481.1 331 74.3
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 9.5e-134 481.1 326 76.1
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.2e-133 480.7 326 73.9
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 4.7e-133 478.8 326 74.2
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 4.7e-133 478.8 350 70.3
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 6.8e-132 474.9 329 73.3
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 8.9e-132 474.6 253 89.7
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.4e-131 472.6 355 70.4
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.8e-131 471.9 328 73.2
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.7e-130 470.3 326 74.8
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.7e-130 470.3 329 72.6
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 2.2e-130 469.9 332 73.5
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 4.9e-130 468.8 333 70.9
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 7.0e-129 464.9 326 72.7
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 9.2e-129 464.5 326 71.8
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.0e-127 461.1 313 72.8
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.3e-127 460.7 338 69.8
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.7e-127 460.3 338 70.4
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.3e-127 459.9 325 71.7
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 5.6e-126 455.3 310 72.9
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.6e-125 453.8 329 71.7
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 6.2e-125 451.8 336 69.6
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.1e-124 451.1 344 67.2
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 2.3e-124 449.9 332 68.7
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.3e-124 449.9 334 68.6
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.3e-124 449.9 331 69.2
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 4.0e-124 449.1 298 78.5
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 5.2e-124 448.7 336 67.9
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 5.2e-124 448.7 339 67.3
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 6.8e-124 448.4 384 62.0
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 8.9e-124 448.0 325 71.1
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.5e-123 447.2 339 67.8
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.5e-123 447.2 321 72.0
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.6e-123 446.4 320 69.7
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 3.4e-123 446.0 332 68.4
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 2.9e-122 443.0 334 68.6
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.7e-122 442.6 316 69.9
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 6.4e-122 441.8 330 70.3
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.1e-121 441.0 329 68.7
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.1e-121 441.0 326 70.2
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.1e-121 441.0 325 70.8
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.4e-121 440.7 311 70.4
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 4.1e-121 439.1 315 71.4
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.7e-120 436.4 329 70.2
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.7e-120 436.4 316 70.9
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 6.0e-120 435.3 309 71.5
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 7.8e-120 434.9 327 70.0
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.3e-119 434.1 325 68.6
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.3e-119 433.3 292 73.6
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 5.1e-119 432.2 322 67.1
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 6.6e-119 431.8 311 70.7
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.9e-118 430.3 337 66.5
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 7.3e-118 428.3 338 66.9
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 7.3e-118 428.3 292 74.7
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.2e-117 427.6 296 73.3
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.1e-117 426.8 327 67.9
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.1e-117 426.8 336 67.9
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.8e-117 426.4 327 67.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 2.8e-117 426.4 332 65.7
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 3.6e-117 426.0 327 67.3
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-116 424.5 294 74.5
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.8e-116 423.7 294 75.5
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.2e-115 421.0 325 67.1
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 5.8e-115 418.7 298 75.2
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 9.9e-115 417.9 333 65.2
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-114 417.5 336 67.3
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.7e-112 409.8 337 64.4
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 3.0e-111 406.4 334 66.8
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 5.1e-111 405.6 331 63.7
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 5.6e-110 402.1 318 68.2
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 9.6e-110 401.4 312 66.0
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.1e-109 400.2 325 64.6
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 3.6e-109 399.4 292 68.8
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 3.1e-108 396.4 326 64.1
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 7.6e-107 391.7 322 64.9
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.0e-104 382.1 332 60.5
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.0e-104 382.1 309 64.4
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 7.8e-104 381.7 321 62.0
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.0e-103 381.3 322 62.4
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 4.0e-100 369.4 229 77.7
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.9e-98 363.2 298 64.1
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.9e-98 362.5 274 67.2
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 2.7e-96 356.7 324 61.7
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 6.0e-96 355.5 236 73.7
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 3.3e-94 349.7 272 67.6
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 3.7e-93 346.3 220 75.0
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 6.2e-93 345.5 237 76.4
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.2e-91 341.3 324 58.6
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 6.4e-90 335.5 328 54.6
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.6e-88 330.9 266 66.5
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.3e-87 327.0 284 60.6
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.9e-87 326.2 267 62.9
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.9e-86 323.9 237 71.3
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 3.7e-85 319.7 294 62.2
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.7e-78 295.8 217 70.5
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.7e-77 293.1 230 66.5
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.0e-74 285.0 226 67.3
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 3.8e-74 283.1 273 57.9
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.0e-74 282.7 222 67.6
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 6.5e-74 282.3 229 68.6
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.2e-73 278.9 159 80.5
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 5.1e-71 272.7 249 61.0
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 2.8e-69 266.9 280 51.4
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 5.0e-66 256.1 231 55.4
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.2e-64 251.5 193 60.6
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 8.8e-63 245.4 223 61.4
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-62 244.6 228 60.1
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 3.4e-59 233.4 197 65.5
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 8.5e-58 228.8 232 56.0
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.1e-57 228.4 190 67.9
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.2e-57 226.5 140 76.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.0e-55 221.9 221 50.2
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.6e-51 208.0 136 75.7
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 4.7e-48 196.4 242 48.3
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 8.2e-45 185.7 281 40.2
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 7.0e-44 182.6 111 76.6
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.6e-40 171.4 239 38.1
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.8e-39 167.9 172 61.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 4.0e-39 166.8 151 53.0
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 7.5e-38 162.5 187 52.9
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.4e-36 156.4 112 62.5
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.0e-35 154.5 280 42.5
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.5e-35 153.7 135 59.3
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 5.9e-35 152.9 162 48.1
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 6.5e-34 149.4 124 68.5
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.8e-31 141.4 179 48.0
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.8e-31 141.4 179 48.0
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 4.0e-31 140.2 179 48.0
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 5.2e-31 139.8 152 48.0
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 1.4e-28 131.7 82 75.6
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 2.3e-26 124.4 82 70.7
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.5e-25 119.0 98 58.2
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 3.4e-22 110.5 108 59.3
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.3e-21 108.6 79 64.6
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.2e-19 102.1 65 63.1
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.6e-19 100.1 68 61.8
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.0e-18 99.0 69 58.0
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 1.3e-18 98.6 121 46.3
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.9e-18 97.1 75 74.7
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 8.6e-18 95.9 88 51.1
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.1e-17 95.5 63 63.5
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 1.1e-17 95.5 63 63.5
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.5e-17 95.1 106 43.4
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.9e-17 94.7 108 44.4
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.1e-15 89.0 68 57.4
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.1e-15 89.0 68 57.4
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.1e-15 89.0 62 59.7
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 6.8e-15 86.3 98 43.9
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-14 85.1 66 54.5
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-14 85.1 66 54.5
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 4.9e-13 80.1 97 53.6
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 8.3e-13 79.3 177 34.5
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.4e-12 78.6 96 53.1
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 9.2e-12 75.9 86 54.7
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.3e-07 61.2 94 43.6
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 5.2e-07 60.1 88 40.9
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 6.8e-07 59.7 71 49.3


User provided reference genes

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