Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 3840.4 1985 100.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2644.8 1541 85.7
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2628.2 1546 85.3
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2447.9 1986 66.6
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2364.3 1605 73.8
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2363.2 2019 63.3
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2324.7 1997 63.1
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2309.6 1644 71.5
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2305.8 1996 62.7
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2303.5 2013 62.2
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2283.4 1888 64.5
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2273.4 1991 61.7
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2270.0 2017 61.4
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2260.7 2137 58.9
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2258.8 2019 61.2
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2251.5 1334 84.8
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2245.7 2018 62.2
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2236.1 1874 62.5
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2233.8 1874 62.4
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2224.9 1874 62.3
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2196.0 2003 61.1
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2194.1 2007 61.0
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2191.4 2026 59.8
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 2182.9 1970 61.4
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2164.8 2004 60.3
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2155.6 2018 60.0
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 2152.5 1704 68.7
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2150.2 2009 59.9
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2114.7 1994 58.8
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2103.9 2008 58.4
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2100.9 2006 58.5
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2093.9 1979 58.3
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2091.2 1880 61.2
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2088.2 1917 58.9
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2087.4 1906 59.4
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2081.2 2010 57.2
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2079.7 2031 59.0
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2075.1 1876 60.2
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2073.1 2015 58.1
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2066.2 1950 58.2
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2056.6 1879 60.0
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2043.1 1859 59.6
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2041.9 1964 57.3
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2038.5 1951 57.6
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2038.1 1890 59.8
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2036.2 1892 58.7
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2029.6 1889 59.4
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2016.9 1876 58.6
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2013.0 1904 58.5
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 2010.7 1934 57.7
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2006.5 1885 58.9
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1998.8 1882 57.2
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1989.2 2017 56.1
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1986.8 1609 63.4
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1980.7 1904 56.5
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1977.2 1941 55.6
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1971.8 1845 58.9
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1962.6 2062 54.8
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1961.8 1902 57.1
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1934.1 1474 66.4
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1931.0 1894 56.7
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1921.0 1961 54.5
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1888.6 2017 54.0
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1887.1 1676 58.9
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1884.8 1932 54.4
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1882.1 1888 55.2
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1881.3 1996 53.6
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1877.8 2025 53.1
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1877.8 1871 54.9
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1877.1 1906 54.5
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1874.4 1926 55.0
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1874.0 1872 54.4
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1873.6 1993 53.4
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1863.6 1873 54.8
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1861.7 2012 53.5
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1860.5 1892 54.3
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1855.9 1874 54.3
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1854.7 2060 51.6
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1854.3 1975 53.7
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1852.4 1965 54.0
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1851.6 1916 52.9
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1849.3 2018 52.8
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1845.9 1994 54.1
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1843.9 1891 55.7
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1843.9 1891 55.7
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1843.2 1948 53.5
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1842.4 1862 54.8
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1829.7 1864 54.7
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1827.0 1989 52.5
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1825.8 1881 53.5
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1823.5 1995 52.2
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1811.2 1925 53.0
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1800.0 1791 55.2
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1789.2 1933 52.6
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1775.8 1947 50.7
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1767.3 1244 72.2
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1744.6 1904 51.8
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1739.2 1141 83.4
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1621.3 1478 57.2
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1533.1 1882 47.8
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1499.6 1157 67.5
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1450.3 887 83.2
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1112.4 2012 37.4
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 0.0e+00 1110.1 1869 39.6
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1076.2 1017 63.2
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 2.7e-311 1072.8 1602 42.4
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 5.3e-306 1055.4 963 58.5
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 5.5e-303 1045.4 1710 38.5
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 3.0e-301 1039.6 1633 38.9
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.0e-293 1014.6 2077 35.3
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 2.0e-268 930.6 1044 52.0
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 3.7e-251 873.2 1142 49.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.6e-233 813.1 1080 45.3
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 6.8e-229 799.3 575 70.3
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.2e-228 798.5 1109 44.9
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 3.0e-224 783.9 1467 35.9
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 4.0e-221 773.5 1163 41.3
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 6.8e-221 772.7 1795 30.6
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.5e-183 648.7 542 61.3
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 4.3e-183 647.1 470 70.0
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.7e-158 565.5 852 43.9
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.2e-147 528.5 665 45.0
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 4.5e-140 504.2 564 49.3
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.2e-137 496.1 545 50.3
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.5e-130 472.6 570 45.6
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 3.0e-123 448.4 670 44.6
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 4.4e-103 381.3 286 69.2
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 4.9e-86 324.7 463 42.3
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.9e-78 298.9 379 44.9
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 2.5e-61 242.7 245 51.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 4.2e-61 241.9 383 39.7
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 4.8e-49 201.8 175 56.0
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.7e-46 193.4 347 37.8
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.9e-45 189.9 681 30.7
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 5.2e-43 181.8 456 34.2
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 2.6e-42 179.5 139 59.7
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 8.2e-41 174.5 639 28.3
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.2e-38 166.4 229 41.0
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 6.1e-36 158.3 160 51.2
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 9.7e-34 151.0 1221 21.0
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-33 150.6 159 50.9
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 8.2e-33 147.9 115 65.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 3.1e-32 146.0 111 66.7
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 1.2e-31 144.1 164 45.7
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 2.7e-31 142.9 372 31.5
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.3e-30 140.6 119 61.3
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.7e-30 140.2 224 38.8
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.0e-27 131.0 94 69.1
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 5.2e-27 128.6 85 74.1
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 5.7e-26 125.2 1038 21.3
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 3.5e-23 115.9 80 63.8
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.9e-21 110.2 151 45.0
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 6.3e-17 95.1 159 37.1
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 2.0e-15 90.1 157 37.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 3.8e-14 85.9 52 75.0
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 6.6e-14 85.1 55 67.3
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 3.3e-13 82.8 141 43.3
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 8.9e-11 74.7 70 54.3
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 8.9e-11 74.7 119 38.7
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.7e-09 70.5 73 53.4
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 1.7e-09 70.5 59 61.0
Psat3g007520 Pisum sativum HOM05D000467 ORTHO05D000379 3.0e-06 59.7 88 38.6
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 6.6e-06 58.5 62 48.4


User provided reference genes

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