Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 7.4e-107 390.6 201 100.0
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 8.0e-85 317.4 201 81.6
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 5.0e-71 271.6 201 71.1
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 8.5e-71 270.8 203 71.9
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 3.0e-68 262.3 202 69.8
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.0e-67 259.6 202 71.8
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 4.4e-67 258.5 207 68.6
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 8.3e-66 254.2 202 70.8
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 4.5e-64 248.4 208 66.8
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 2.3e-63 246.1 213 65.3
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 6.6e-63 244.6 203 66.0
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 7.2e-62 241.1 209 65.1
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 9.5e-62 240.7 209 65.6
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 2.1e-61 239.6 206 66.0
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 2.8e-61 239.2 206 63.6
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 6.1e-61 238.0 209 64.1
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 1.0e-60 237.3 201 63.7
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 4.0e-60 235.3 204 65.7
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 6.8e-60 234.6 207 64.7
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 8.9e-60 234.2 207 64.3
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 8.9e-60 234.2 202 64.4
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.5e-59 233.4 208 62.5
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 2.0e-59 233.0 212 64.6
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 2.6e-59 232.6 202 63.9
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 2.6e-59 232.6 201 62.7
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 4.4e-59 231.9 203 64.0
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 5.7e-59 231.5 212 61.3
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 9.8e-59 230.7 201 63.2
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.3e-58 230.3 208 65.9
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.3e-58 230.3 208 65.9
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.3e-58 230.3 203 64.0
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 1.3e-58 230.3 201 64.2
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 1.7e-58 229.9 199 64.8
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.2e-58 229.6 207 66.2
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 2.8e-58 229.2 202 63.4
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 3.7e-58 228.8 208 62.5
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 6.3e-58 228.0 208 62.5
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 6.3e-58 228.0 208 65.4
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 6.3e-58 228.0 209 62.7
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 8.3e-58 227.6 204 63.2
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 8.3e-58 227.6 205 63.4
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.1e-57 227.3 216 60.2
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 1.1e-57 227.3 208 64.4
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 1.4e-57 226.9 208 61.5
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.4e-57 226.9 208 64.9
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.8e-57 226.5 203 64.5
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 2.4e-57 226.1 202 63.9
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 2.4e-57 226.1 203 63.5
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 3.1e-57 225.7 208 62.0
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 4.1e-57 225.3 201 61.2
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 5.4e-57 224.9 206 59.2
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 1.2e-56 223.8 205 62.0
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 1.6e-56 223.4 208 60.1
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.6e-56 223.4 205 64.9
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.0e-56 223.0 202 64.9
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 2.7e-56 222.6 203 61.6
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 2.7e-56 222.6 208 63.0
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 3.5e-56 222.2 204 62.3
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 3.5e-56 222.2 206 64.1
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.5e-56 222.2 207 61.8
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 5.9e-56 221.5 207 63.8
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 7.8e-56 221.1 201 63.2
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 7.8e-56 221.1 207 61.8
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 7.8e-56 221.1 205 61.0
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 1.3e-55 220.3 203 61.6
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.3e-55 220.3 209 63.6
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.3e-55 220.3 209 63.6
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 2.9e-55 219.2 205 63.9
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.9e-55 219.2 207 60.4
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 3.8e-55 218.8 205 61.5
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 3.8e-55 218.8 206 63.1
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 5.0e-55 218.4 204 62.3
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 5.0e-55 218.4 207 61.8
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 8.6e-55 217.6 204 62.3
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 8.6e-55 217.6 208 59.1
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 1.1e-54 217.2 204 61.8
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 1.1e-54 217.2 204 61.8
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 1.5e-54 216.9 207 62.8
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 1.9e-54 216.5 208 60.6
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 1.9e-54 216.5 206 60.7
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 3.3e-54 215.7 207 62.3
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 3.3e-54 215.7 204 62.3
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 3.3e-54 215.7 207 62.3
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 3.3e-54 215.7 204 63.7
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 4.3e-54 215.3 210 60.0
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 5.6e-54 214.9 208 63.0
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 5.6e-54 214.9 202 60.9
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 7.3e-54 214.5 205 62.9
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 7.3e-54 214.5 191 63.9
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 7.3e-54 214.5 205 61.5
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 7.3e-54 214.5 203 61.6
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.2e-53 213.8 205 63.4
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 1.2e-53 213.8 205 60.0
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 2.1e-53 213.0 208 57.7
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 2.1e-53 213.0 203 61.1
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 4.7e-53 211.8 201 59.2
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 4.7e-53 211.8 205 61.5
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.1e-53 211.5 205 61.0
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 6.1e-53 211.5 205 61.0
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 6.1e-53 211.5 212 59.4
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 8.0e-53 211.1 208 59.1
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 1.8e-52 209.9 208 59.6
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 2.3e-52 209.5 203 60.1
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.3e-52 209.5 205 59.0
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 3.1e-52 209.1 203 60.1
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 3.1e-52 209.1 207 58.5
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 4.0e-52 208.8 205 58.0
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 4.0e-52 208.8 205 58.0
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 4.0e-52 208.8 205 58.0
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 6.8e-52 208.0 202 59.9
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 6.8e-52 208.0 204 60.3
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.5e-51 206.8 210 60.0
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 1.5e-51 206.8 201 58.2
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 2.6e-51 206.1 158 68.4
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 4.4e-51 205.3 199 59.8
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 5.8e-51 204.9 202 56.9
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 9.8e-51 204.1 210 59.5
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 8.3e-50 201.1 203 60.6
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.1e-49 200.7 212 57.1
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 1.4e-49 200.3 172 65.7
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 4.1e-49 198.7 206 58.7
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 7.0e-49 198.0 115 83.5
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 6.0e-48 194.9 203 57.1
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 1.0e-47 194.1 103 89.3
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 1.3e-47 193.7 103 89.3
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 2.3e-47 193.0 103 88.3
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 3.9e-47 192.2 103 88.3
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 3.9e-47 192.2 111 82.0
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 9.5e-46 187.6 103 86.4
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 1.6e-45 186.8 201 55.2
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 2.8e-45 186.0 201 55.2
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 2.8e-45 186.0 201 54.7
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 1.1e-44 184.1 185 56.8
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 1.1e-44 184.1 110 81.8
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 2.3e-44 183.0 206 54.9
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 3.7e-42 175.6 99 81.8
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 8.3e-42 174.5 102 84.3
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 1.6e-40 170.2 129 65.1
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 6.0e-40 168.3 103 77.7
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 1.3e-39 167.2 106 75.5
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.7e-39 166.8 188 51.6
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.1e-38 164.1 141 60.3
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 6.2e-37 158.3 118 68.6
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 3.1e-36 156.0 157 57.3
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 2.4e-33 146.4 204 45.1
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 7.8e-32 141.4 201 46.3
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 1.9e-30 136.7 105 61.0
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 8.1e-29 131.3 104 60.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.6e-24 117.1 100 53.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 1.3e-18 97.4 167 37.7
FAN07G0629 Fragaria x ananassa HOM05D001946 ORTHO05D002111 6.0e-08 62.0 116 34.5
FvH4_4g30020 Fragaria vesca HOM05D001946 ORTHO05D002111 1.0e-07 61.2 116 32.8
FAN12G4109 Fragaria x ananassa HOM05D001946 ORTHO05D002111 1.0e-07 61.2 116 32.8
RcHm_v2.0_Chr4g0438311 Rosa chinensis HOM05D001946 ORTHO05D002111 1.3e-07 60.8 113 34.5


User provided reference genes

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