Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0129600 Rhododendron simsii HOM05D000681 ORTHO05D025799 2.1e-91 339.0 168 100.0
QL03p015450 Quercus lobata HOM05D000681 ORTHO05D005458 6.8e-13 78.2 78 48.7
QL93p0183_0018 Quercus lobata HOM05D000681 ORTHO05D005458 6.8e-13 78.2 78 48.7
QL93p2017_0010 Quercus lobata HOM05D000681 ORTHO05D005458 6.8e-13 78.2 78 48.7
Dinv19483 Davidia involucrata HOM05D000681 ORTHO05D005458 1.2e-09 67.4 39 69.2
CSS0026429 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 1.6e-09 67.0 39 69.2
CSS0032659 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 1.6e-09 67.0 39 69.2
Rhsim08G0007000 Rhododendron simsii HOM05D000681 ORTHO05D005458 2.0e-09 66.6 59 52.5
vmacro18636 Vaccinium macrocarpon HOM05D000681 ORTHO05D005458 3.5e-09 65.9 39 69.2
Actinidia12210 Actinidia chinensis HOM05D000681 ORTHO05D005458 4.6e-09 65.5 39 69.2
Dinv42689 Davidia involucrata HOM05D000681 ORTHO05D005458 4.6e-09 65.5 39 66.7
HanXRQChr15g0493501 Helianthus annuus HOM05D000681 ORTHO05D005458 4.6e-09 65.5 39 66.7
Hma1.2p1_0375F.1_g138760 Hydrangea macrophylla HOM05D000681 ORTHO05D005458 4.6e-09 65.5 39 66.7
MBI02_g18929_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D005458 4.6e-09 65.5 39 66.7
ECA232G3656 Erigeron canadensis HOM05D000681 ORTHO05D005458 5.9e-09 65.1 39 66.7
Potri.005G084800 Populus trichocarpa HOM05D000681 ORTHO05D005458 7.8e-09 64.7 37 70.3
TWI77G0095 Tripterygium wilfordii HOM05D000681 ORTHO05D005458 7.8e-09 64.7 39 66.7
HPP92_013373 Vanilla planifolia HOM05D000681 ORTHO05D005458 7.8e-09 64.7 49 57.1
Oeu028523.2 Olea europaea HOM05D000681 ORTHO05D005458 1.0e-08 64.3 39 64.1
Sabra07G0067700 Salix brachista HOM05D000681 ORTHO05D005458 1.0e-08 64.3 40 62.5
Ciclev10025045m.g Citrus clementina HOM05D000681 ORTHO05D005458 1.3e-08 63.9 39 66.7
Cc07_g16310 Coffea canephora HOM05D000681 ORTHO05D005458 1.3e-08 63.9 39 64.1
COL.COLO4_11004 Corchorus olitorius HOM05D000681 ORTHO05D005458 1.3e-08 63.9 39 64.1
DCAR_001373 Daucus carota HOM05D000681 ORTHO05D005458 1.3e-08 63.9 105 38.1
HanXRQChr09g0259711 Helianthus annuus HOM05D000681 ORTHO05D005458 1.3e-08 63.9 39 64.1
Lsat_1_v5_gn_4_137440 Lactuca sativa HOM05D000681 ORTHO05D005458 1.3e-08 63.9 39 66.7
Rhsim08G0006300 Rhododendron simsii HOM05D000681 ORTHO05D005458 1.3e-08 63.9 39 64.1
SGA_v2.0_scaffold2G01293 Striga asiatica HOM05D000681 ORTHO05D005458 1.3e-08 63.9 39 64.1
Aa31LG1G17090 Aethionema arabicum HOM05D000681 ORTHO05D005458 1.7e-08 63.5 39 66.7
BcaC03g18282 Brassica carinata HOM05D000681 ORTHO05D005458 1.7e-08 63.5 39 66.7
A02p43520 Brassica napus HOM05D000681 ORTHO05D005458 1.7e-08 63.5 39 66.7
C02p63610 Brassica napus HOM05D000681 ORTHO05D005458 1.7e-08 63.5 39 66.7
BolC2t12427H Brassica oleracea HOM05D000681 ORTHO05D005458 1.7e-08 63.5 39 66.7
BraA02t09280Z Brassica rapa HOM05D000681 ORTHO05D005458 1.7e-08 63.5 39 66.7
AL8G42320 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 2.3e-08 63.2 39 64.1
AT5G64840 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 2.3e-08 63.2 39 64.1
BcaB07g29761 Brassica carinata HOM05D000681 ORTHO05D005458 2.3e-08 63.2 39 64.1
Carub.0008s2567 Capsella rubella HOM05D000681 ORTHO05D005458 2.3e-08 63.2 39 64.1
CARHR278850 Cardamine hirsuta HOM05D000681 ORTHO05D005458 2.3e-08 63.2 39 64.1
Thhalv10003741m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 2.3e-08 63.2 39 64.1
Gohir.A02G135600 Gossypium hirsutum HOM05D000681 ORTHO05D005458 2.3e-08 63.2 37 67.6
Gohir.D03G046533 Gossypium hirsutum HOM05D000681 ORTHO05D005458 2.3e-08 63.2 37 67.6
Gohir.D11G233700 Gossypium hirsutum HOM05D000681 ORTHO05D005458 2.3e-08 63.2 37 67.6
Gorai.003G047600 Gossypium raimondii HOM05D000681 ORTHO05D005458 2.3e-08 63.2 37 67.6
Gorai.007G244600 Gossypium raimondii HOM05D000681 ORTHO05D005458 2.3e-08 63.2 37 67.6
Manes.12G143100 Manihot esculenta HOM05D000681 ORTHO05D005458 2.3e-08 63.2 37 67.6
Nn1g05175 Nelumbo nucifera HOM05D000681 ORTHO05D005458 2.3e-08 63.2 37 67.6
Nn5g28891 Nelumbo nucifera HOM05D000681 ORTHO05D005458 2.3e-08 63.2 37 67.6
Potri.007G080600 Populus trichocarpa HOM05D000681 ORTHO05D005458 2.3e-08 63.2 37 67.6
QL04p089235 Quercus lobata HOM05D000681 ORTHO05D025799 2.3e-08 63.2 39 64.1
QL05p031725 Quercus lobata HOM05D000681 ORTHO05D025799 2.3e-08 63.2 39 64.1
QL06p031995 Quercus lobata HOM05D000681 ORTHO05D005458 2.3e-08 63.2 39 64.1
Atru.chr4.340 Acer truncatum HOM05D000681 ORTHO05D005458 3.0e-08 62.8 39 64.1
Migut.H02441 Erythranthe guttata HOM05D000681 ORTHO05D005458 3.0e-08 62.8 39 61.5
SalBow5G4766 Salvia bowleyana HOM05D000681 ORTHO05D005458 3.0e-08 62.8 105 38.1
Sp2g27920 Schrenkiella parvula HOM05D000681 ORTHO05D005458 3.0e-08 62.8 39 64.1
Aqoxy5G01993 Aquilegia oxysepala HOM05D000681 ORTHO05D005458 3.9e-08 62.4 37 67.6
MSTRG.2527 Avicennia marina HOM05D000681 ORTHO05D005458 3.9e-08 62.4 39 61.5
Cpa.g.c37838 Carica papaya HOM05D000681 ORTHO05D005458 3.9e-08 62.4 37 67.6
FAN28G1262 Fragaria x ananassa HOM05D000681 ORTHO05D005458 3.9e-08 62.4 38 65.8
THA.LOC104799282 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 3.9e-08 62.4 39 64.1
THA.LOC104818476 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 3.9e-08 62.4 39 61.5
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 5.0e-08 62.0 37 64.9
Duzib147G1662 Durio zibethinus HOM05D000681 ORTHO05D005458 5.0e-08 62.0 39 61.5
Gohir.A11G198000 Gossypium hirsutum HOM05D000681 ORTHO05D005458 5.0e-08 62.0 37 64.9
Nitab4.5_0004840g0050 Nicotiana tabacum HOM05D000681 ORTHO05D005458 5.0e-08 62.0 88 42.0
Nitab4.5_0006520g0010 Nicotiana tabacum HOM05D000681 ORTHO05D005458 5.0e-08 62.0 88 42.0
arahy.Tifrunner.gnm1.ann1.G3SQ12 Arachis hypogaea HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
arahy.Tifrunner.gnm1.ann1.TR14KI Arachis hypogaea HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
CANSAT01G0682 Cannabis sativa HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
Ca_16896_v3 Cicer arietinum L. HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
MELO3C007483.2 Cucumis melo HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 64.9
CsaV3_6G042400 Cucumis sativus L. HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 64.9
FvH4_1g22620 Fragaria vesca HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
FAN19G1795 Fragaria x ananassa HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
FAN23G0462 Fragaria x ananassa HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
FAN26G1956 Fragaria x ananassa HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
Glyma.04G218900 Glycine max HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
Glyma.06G146900 Glycine max HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
Lj4A865T29 Lonicera japonica HOM05D000681 ORTHO05D005458 6.6e-08 61.6 39 61.5
Lj1g0006962 Lotus japonicus HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
Medtr3g095010 Medicago truncatula HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
Psat5g065080 Pisum sativum HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
RcHm_v2.0_Chr2g0116631 Rosa chinensis HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 64.9
Thecc.01G113800 Theobroma cacao HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 64.9
TPR.G23769 Trifolium pratense HOM05D000681 ORTHO05D005458 6.6e-08 61.6 37 67.6
CARHR203400 Cardamine hirsuta HOM05D000681 ORTHO05D005458 8.6e-08 61.2 39 64.1
Duzib264G0717 Durio zibethinus HOM05D000681 ORTHO05D005458 8.6e-08 61.2 37 67.6
Lj4g0003781 Lotus japonicus HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 67.6
Lalb_Chr23g0272391 Lupinus albus HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 67.6
MD15G1331800 Malus domestica HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 67.6
PSO170G5235 Papaver somniferum HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 67.6
PSO210G1708 Papaver somniferum HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 67.6
Phvul.009G139100 Phaseolus vulgaris HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 67.6
Prupe.6G171800 Prunus persica HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 67.6
Sc09g0002800 Simmondsia chinensis HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 64.9
TAR381G0346 Trochodendron aralioides HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 64.9
HPP92_013366 Vanilla planifolia HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 67.6
VMungo1309G3103 Vigna mungo HOM05D000681 ORTHO05D005458 1.1e-07 60.8 37 67.6
ATR0564G351 Amborella trichopoda HOM05D000681 ORTHO05D005458 1.5e-07 60.5 37 64.9
CAN.G347.2 Capsicum annuum HOM05D000681 ORTHO05D005458 1.5e-07 60.5 88 40.9
CiPaw.03G134000 Carya illinoinensis HOM05D000681 ORTHO05D005458 1.5e-07 60.5 37 64.9
CDE02G2865 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 1.5e-07 60.5 37 62.2
CDE08G1085 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 1.5e-07 60.5 37 62.2
Thhalv10012861m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 1.5e-07 60.5 39 64.1
Sp6g33480 Schrenkiella parvula HOM05D000681 ORTHO05D005458 1.5e-07 60.5 39 64.1
Dinv16779 Davidia involucrata HOM05D006072 ORTHO05D007363 1.9e-07 60.1 103 42.7
Solyc04g051800.3 Solanum lycopersicum HOM05D000681 ORTHO05D005458 1.9e-07 60.1 88 40.9
Sopen04g023150 Solanum pennellii HOM05D000681 ORTHO05D005458 1.9e-07 60.1 88 40.9
PGSC0003DMG400016576 Solanum tuberosum HOM05D000681 ORTHO05D005458 1.9e-07 60.1 88 40.9
GSVIVG01022235001 Vitis vinifera HOM05D000681 ORTHO05D005458 1.9e-07 60.1 37 62.2
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 2.5e-07 59.7 78 44.9
BcaB08g37171 Brassica carinata HOM05D000681 ORTHO05D005458 2.5e-07 59.7 39 64.1
A10p27550 Brassica napus HOM05D000681 ORTHO05D005458 2.5e-07 59.7 39 64.1
C09p67620 Brassica napus HOM05D000681 ORTHO05D005458 2.5e-07 59.7 39 64.1
BraA10t44807Z Brassica rapa HOM05D000681 ORTHO05D005458 2.5e-07 59.7 39 64.1
Eucgr.I00319 Eucalyptus grandis HOM05D000681 ORTHO05D005458 2.5e-07 59.7 37 64.9
PGR004G1701 Punica granatum HOM05D000681 ORTHO05D005458 2.5e-07 59.7 39 59.0
SalBow6G0295 Salvia bowleyana HOM05D000681 ORTHO05D005458 2.5e-07 59.7 39 61.5
unitig_747.g21746 Utricularia gibba HOM05D000681 ORTHO05D005458 2.5e-07 59.7 39 61.5
MBI13_g23287_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D025799 3.3e-07 59.3 39 66.7
Peaxi162Scf00106g02319 Petunia axillaris HOM05D000681 ORTHO05D005458 3.3e-07 59.3 88 39.8
TAR625G1550 Trochodendron aralioides HOM05D000681 ORTHO05D005458 4.3e-07 58.9 37 64.9
Os11g0603200 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D005458 5.6e-07 58.5 39 59.0
RcHm_v2.0_Chr2g0116831 Rosa chinensis HOM05D000681 ORTHO05D005458 5.6e-07 58.5 37 64.9
AL6G20350 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 7.3e-07 58.2 39 61.5
AT5G09930 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 7.3e-07 58.2 39 61.5
BolC9t59524H Brassica oleracea HOM05D000681 ORTHO05D005458 7.3e-07 58.2 39 61.5
Carub.0006s0837 Capsella rubella HOM05D000681 ORTHO05D005458 7.3e-07 58.2 39 61.5
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 7.3e-07 58.2 78 46.2
Cfa002759 Carpinus fangiana HOM05D000681 ORTHO05D005458 9.5e-07 57.8 37 62.2
Haze_25051 Corylus avellana HOM05D000681 ORTHO05D005458 9.5e-07 57.8 37 62.2
Aa31LG3G17200 Aethionema arabicum HOM05D000681 ORTHO05D005458 1.2e-06 57.4 39 59.0
RcHm_v2.0_Chr2g0116661 Rosa chinensis HOM05D000681 ORTHO05D005458 1.6e-06 57.0 41 65.9
Zm00001eb115000 Zea mays HOM05D000681 ORTHO05D005458 1.6e-06 57.0 39 59.0
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 2.8e-06 56.2 58 56.9
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 3.6e-06 55.8 98 36.7
Hund21729 Selenicereus undatus HOM05D000681 ORTHO05D005458 3.6e-06 55.8 39 56.4


User provided reference genes

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