Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.5e-42 175.6 83 100.0
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 5.9e-18 94.0 60 78.3
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 5.0e-17 90.9 46 91.3
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 5.9e-10 67.4 47 72.3
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 5.9e-10 67.4 49 67.3
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 1.0e-09 66.6 47 70.2
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 1.0e-09 66.6 47 70.2
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 1.7e-09 65.9 47 72.3
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 1.7e-09 65.9 47 70.2
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.7e-09 65.9 47 70.2
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 2.2e-09 65.5 47 68.1
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 2.2e-09 65.5 47 68.1
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 2.2e-09 65.5 47 68.1
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 2.9e-09 65.1 47 68.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 3.8e-09 64.7 47 68.1
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 5.0e-09 64.3 47 68.1
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 6.5e-09 63.9 47 68.1
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 6.5e-09 63.9 47 68.1
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 6.5e-09 63.9 47 68.1
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 6.5e-09 63.9 47 66.0
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 8.5e-09 63.5 47 66.0
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 8.5e-09 63.5 47 66.0
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 8.5e-09 63.5 47 66.0
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 1.1e-08 63.2 47 68.1
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.1e-08 63.2 47 68.1
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 1.1e-08 63.2 47 66.0
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 1.1e-08 63.2 47 66.0
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 1.1e-08 63.2 47 68.1
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 1.1e-08 63.2 47 66.0
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 1.1e-08 63.2 47 66.0
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.1e-08 63.2 47 63.8
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 1.5e-08 62.8 47 66.0
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 1.5e-08 62.8 47 66.0
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 1.5e-08 62.8 47 68.1
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 1.9e-08 62.4 47 63.8
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.9e-08 62.4 47 66.0
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 1.9e-08 62.4 47 66.0
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 1.9e-08 62.4 47 66.0
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 1.9e-08 62.4 47 63.8
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 2.5e-08 62.0 47 63.8
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.5e-08 62.0 47 68.1
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 2.5e-08 62.0 47 68.1
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 2.5e-08 62.0 47 66.0
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 2.5e-08 62.0 47 63.8
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.5e-08 62.0 47 63.8
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 3.2e-08 61.6 47 63.8
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 3.2e-08 61.6 46 67.4
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 3.2e-08 61.6 47 70.2
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 3.2e-08 61.6 47 66.0
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 4.2e-08 61.2 47 59.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 4.2e-08 61.2 47 61.7
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 4.2e-08 61.2 47 63.8
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 4.2e-08 61.2 47 61.7
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 4.2e-08 61.2 47 63.8
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 4.2e-08 61.2 47 63.8
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 5.5e-08 60.8 47 63.8
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 5.5e-08 60.8 47 66.0
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 5.5e-08 60.8 47 66.0
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 5.5e-08 60.8 47 63.8
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 5.5e-08 60.8 47 61.7
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 5.5e-08 60.8 47 66.0
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 5.5e-08 60.8 53 58.5
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 5.5e-08 60.8 47 68.1
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 5.5e-08 60.8 47 63.8
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 66.0
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 63.8
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 63.8
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 61.7
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 61.7
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 66.0
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 66.0
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 66.0
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 66.0
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 61.7
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 61.7
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 7.2e-08 60.5 47 66.0
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 9.4e-08 60.1 47 61.7
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 9.4e-08 60.1 47 61.7
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 9.4e-08 60.1 47 63.8
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 9.4e-08 60.1 47 61.7
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 9.4e-08 60.1 47 61.7
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 9.4e-08 60.1 47 61.7
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 9.4e-08 60.1 46 67.4
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 9.4e-08 60.1 47 61.7
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 1.2e-07 59.7 47 61.7
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 1.2e-07 59.7 47 63.8
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 1.2e-07 59.7 47 63.8
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 1.6e-07 59.3 47 63.8
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 1.6e-07 59.3 47 63.8
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 1.6e-07 59.3 47 61.7
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 1.6e-07 59.3 47 63.8
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.6e-07 59.3 47 63.8
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 1.6e-07 59.3 47 63.8
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 1.6e-07 59.3 47 63.8
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 2.1e-07 58.9 47 63.8
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 2.7e-07 58.5 47 63.8
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.7e-07 58.5 47 63.8
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.7e-07 58.5 47 63.8
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.7e-07 58.5 47 63.8
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.7e-07 58.5 47 63.8
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 3.6e-07 58.2 47 61.7
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 4.7e-07 57.8 47 61.7
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 4.7e-07 57.8 47 59.6
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 4.7e-07 57.8 47 59.6
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 6.1e-07 57.4 51 58.8
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 8.0e-07 57.0 46 65.2
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 8.0e-07 57.0 47 61.7
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.0e-06 56.6 46 63.0
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 1.0e-06 56.6 47 59.6
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 1.0e-06 56.6 47 59.6
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.0e-06 56.6 46 65.2
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 1.0e-06 56.6 46 65.2
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 1.4e-06 56.2 45 64.4
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 1.4e-06 56.2 47 55.3
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.4e-06 56.2 47 63.8
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 1.4e-06 56.2 47 63.8
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.4e-06 56.2 46 58.7
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.3e-06 55.5 47 57.4
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 3.0e-06 55.1 51 56.9
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 3.0e-06 55.1 38 68.4
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 4.0e-06 54.7 45 66.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 4.0e-06 54.7 45 66.7
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 8.8e-06 53.5 47 55.3


User provided reference genes

Program Settings