Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0118900 Rhododendron simsii HOM05D003597 ORTHO05D004420 9.5e-83 310.1 151 100.0
Rhsim06G0109200 Rhododendron simsii HOM05D003597 ORTHO05D004420 4.2e-46 188.3 166 60.2
vmacro12529 Vaccinium macrocarpon HOM05D003597 ORTHO05D004420 5.1e-44 181.4 188 53.7
CSS0024515 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 3.3e-43 178.7 189 53.4
Dinv27385 Davidia involucrata HOM05D003597 ORTHO05D004420 6.5e-39 164.5 189 50.3
Dinv26719 Davidia involucrata HOM05D003597 ORTHO05D004420 1.1e-38 163.7 188 50.0
Actinidia23041 Actinidia chinensis HOM05D003597 ORTHO05D004420 2.5e-35 152.5 193 46.6
Cpa.g.c31003 Carica papaya HOM05D003597 ORTHO05D004420 2.4e-33 146.0 186 46.2
Manes.18G072800 Manihot esculenta HOM05D003597 ORTHO05D004420 1.2e-32 143.7 186 44.6
Cc00_g02330 Coffea canephora HOM05D003597 ORTHO05D004420 4.5e-32 141.7 189 43.4
Lj4C579G4 Lonicera japonica HOM05D003597 ORTHO05D004420 7.7e-32 141.0 159 45.9
GSVIVG01008944001 Vitis vinifera HOM05D003597 ORTHO05D004420 1.7e-31 139.8 189 43.4
PSO017G6492 Papaver somniferum HOM05D003597 ORTHO05D004420 2.9e-31 139.0 191 43.5
PSO170G0537 Papaver somniferum HOM05D003597 ORTHO05D004420 2.9e-31 139.0 191 43.5
Prupe.1G506100 Prunus persica HOM05D003597 ORTHO05D004420 5.0e-31 138.3 193 43.5
Ciclev10000027m.g Citrus clementina HOM05D003597 ORTHO05D004420 1.4e-30 136.7 189 42.3
SalBow7G0935 Salvia bowleyana HOM05D003597 ORTHO05D004420 3.2e-30 135.6 187 42.8
SalBow7G4807 Salvia bowleyana HOM05D003597 ORTHO05D004420 3.2e-30 135.6 187 42.8
CANSAT25G1161 Cannabis sativa HOM05D003597 ORTHO05D004420 4.2e-30 135.2 171 42.7
DCAR_031233 Daucus carota HOM05D003597 ORTHO05D004420 4.2e-30 135.2 194 42.8
Psat5g134160 Pisum sativum HOM05D003597 ORTHO05D004420 7.2e-30 134.4 189 43.9
Oeu030027.4 Olea europaea HOM05D003597 ORTHO05D004420 9.4e-30 134.0 189 42.3
TWI12G1217 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 9.4e-30 134.0 167 44.9
SGA_v2.0_scaffold118G32437 Striga asiatica HOM05D003597 ORTHO05D004420 1.2e-29 133.7 194 41.8
Lj1g0013609 Lotus japonicus HOM05D003597 ORTHO05D004420 1.6e-29 133.3 193 42.0
COL.COLO4_03393 Corchorus olitorius HOM05D003597 ORTHO05D004420 2.1e-29 132.9 170 42.9
Gohir.D01G182100 Gossypium hirsutum HOM05D003597 ORTHO05D004420 2.1e-29 132.9 188 42.6
Gorai.002G220300 Gossypium raimondii HOM05D003597 ORTHO05D004420 2.1e-29 132.9 188 42.6
Hma1.2p1_0221F.1_g093170 Hydrangea macrophylla HOM05D003597 ORTHO05D004420 2.1e-29 132.9 78 70.5
Haze_00524 Corylus avellana HOM05D003597 ORTHO05D004420 2.7e-29 132.5 189 41.8
Gohir.A01G187600 Gossypium hirsutum HOM05D003597 ORTHO05D004420 2.7e-29 132.5 188 42.6
Phvul.009G025800 Phaseolus vulgaris HOM05D003597 ORTHO05D004420 2.7e-29 132.5 167 43.7
TPR.G32944 Trifolium pratense HOM05D003597 ORTHO05D004420 2.7e-29 132.5 166 44.6
TWI56G1037 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 3.6e-29 132.1 167 43.7
DCAR_014282 Daucus carota HOM05D003597 ORTHO05D004420 1.0e-28 130.6 83 63.9
Medtr3g073320 Medicago truncatula HOM05D003597 ORTHO05D004420 1.0e-28 130.6 189 42.9
Cfa015958 Carpinus fangiana HOM05D003597 ORTHO05D004420 1.4e-28 130.2 189 41.3
Lalb_Chr11g0065691 Lupinus albus HOM05D003597 ORTHO05D004420 1.4e-28 130.2 174 43.1
Ca_25762_v3 Cicer arietinum L. HOM05D003597 ORTHO05D004420 1.8e-28 129.8 172 44.2
Oeu043794.4 Olea europaea HOM05D003597 ORTHO05D004420 1.8e-28 129.8 167 41.9
VMungo1309G0254 Vigna mungo HOM05D003597 ORTHO05D004420 2.3e-28 129.4 167 43.1
Migut.C01191 Erythranthe guttata HOM05D003597 ORTHO05D004420 5.1e-28 128.3 183 42.6
arahy.Tifrunner.gnm1.ann1.WJPD8A Arachis hypogaea HOM05D003597 ORTHO05D004420 8.8e-28 127.5 189 40.7
MSTRG.25418 Avicennia marina HOM05D003597 ORTHO05D004420 1.1e-27 127.1 189 41.3
Nn5g27956 Nelumbo nucifera HOM05D003597 ORTHO05D004420 1.1e-27 127.1 189 42.9
Duzib093G1782 Durio zibethinus HOM05D003597 ORTHO05D004420 1.5e-27 126.7 189 40.7
Nitab4.5_0000051g0110 Nicotiana tabacum HOM05D003597 ORTHO05D004420 1.5e-27 126.7 182 42.3
TAR197G0005 Trochodendron aralioides HOM05D003597 ORTHO05D004420 1.5e-27 126.7 194 40.7
Thecc.08G116700 Theobroma cacao HOM05D003597 ORTHO05D004420 2.6e-27 125.9 189 41.8
Glyma.04G253800 Glycine max HOM05D003597 ORTHO05D004420 4.4e-27 125.2 175 43.4
arahy.Tifrunner.gnm1.ann1.Y09WXD Arachis hypogaea HOM05D003597 ORTHO05D004420 5.7e-27 124.8 200 39.0
ClCG03G009090 Citrullus lanatus HOM05D003597 ORTHO05D004420 7.4e-27 124.4 159 43.4
Potri.002G089400 Populus trichocarpa HOM05D003597 ORTHO05D004420 7.4e-27 124.4 186 41.9
TWI36G0588 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 7.4e-27 124.4 158 41.8
ECA246G2386 Erigeron canadensis HOM05D003597 ORTHO05D004420 9.7e-27 124.0 188 42.6
Glyma.06G108500 Glycine max HOM05D003597 ORTHO05D004420 9.7e-27 124.0 175 42.9
Eucgr.F03741 Eucalyptus grandis HOM05D003597 ORTHO05D004420 1.7e-26 123.2 189 40.7
Nitab4.5_0002496g0040 Nicotiana tabacum HOM05D003597 ORTHO05D004420 1.7e-26 123.2 192 41.7
Sabra02G0070400 Salix brachista HOM05D003597 ORTHO05D004420 1.7e-26 123.2 186 40.3
THA.LOC104800176 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 1.7e-26 123.2 187 40.1
CiPaw.06G024800 Carya illinoinensis HOM05D003597 ORTHO05D004420 2.2e-26 122.9 186 40.9
Lalb_Chr08g0241721 Lupinus albus HOM05D003597 ORTHO05D004420 2.2e-26 122.9 167 41.9
MELO3C022786.2 Cucumis melo HOM05D003597 ORTHO05D004420 2.8e-26 122.5 164 42.7
CsaV3_5G023530 Cucumis sativus L. HOM05D003597 ORTHO05D004420 2.8e-26 122.5 164 42.7
MBI06_g01044_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 3.7e-26 122.1 199 40.7
QL12p035319 Quercus lobata HOM05D003597 ORTHO05D004420 6.3e-26 121.3 78 67.9
Sed0005676 Sechium edule HOM05D003597 ORTHO05D004420 6.3e-26 121.3 159 41.5
Peaxi162Scf00476g00039 Petunia axillaris HOM05D003597 ORTHO05D004420 1.8e-25 119.8 182 40.1
Lalb_Chr17g0344031 Lupinus albus HOM05D003597 ORTHO05D004420 2.4e-25 119.4 172 41.3
Atru.chr13.1317 Acer truncatum HOM05D003597 ORTHO05D004420 5.3e-25 118.2 78 65.4
Atru.chr13.1361 Acer truncatum HOM05D003597 ORTHO05D004420 5.3e-25 118.2 78 65.4
MD15G1358500 Malus domestica HOM05D003597 ORTHO05D004420 5.3e-25 118.2 189 37.6
MD08G1173200 Malus domestica HOM05D003597 ORTHO05D004420 9.1e-25 117.5 189 37.6
HanXRQChr05g0150511 Helianthus annuus HOM05D003597 ORTHO05D004420 1.5e-24 116.7 188 41.5
Solyc11g013530.3 Solanum lycopersicum HOM05D003597 ORTHO05D004420 1.5e-24 116.7 188 42.0
CiPaw.05G229100 Carya illinoinensis HOM05D003597 ORTHO05D004420 2.0e-24 116.3 190 39.5
Psat1g136880 Pisum sativum HOM05D003597 ORTHO05D004420 2.0e-24 116.3 78 64.1
FAN08G0909 Fragaria x ananassa HOM05D003597 ORTHO05D004420 3.4e-24 115.5 193 37.3
Psat7g089080 Pisum sativum HOM05D000917 ORTHO05D000764 3.4e-24 115.5 78 62.8
Duzib041G0227 Durio zibethinus HOM05D003597 ORTHO05D004420 4.5e-24 115.2 78 62.8
Lsat_1_v5_gn_6_109621 Lactuca sativa HOM05D003597 ORTHO05D004420 4.5e-24 115.2 78 64.1
Sopen11g008560 Solanum pennellii HOM05D003597 ORTHO05D004420 4.5e-24 115.2 188 41.5
Sabra05G0129300 Salix brachista HOM05D003597 ORTHO05D004420 5.9e-24 114.8 164 40.9
FvH4_5g38940 Fragaria vesca HOM05D003597 ORTHO05D004420 2.2e-23 112.8 193 36.8
FAN04G0001 Fragaria x ananassa HOM05D003597 ORTHO05D004420 3.8e-23 112.1 193 36.3
Gohir.A06G040800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 3.8e-23 112.1 184 37.0
RcHm_v2.0_Chr7g0240911 Rosa chinensis HOM05D003597 ORTHO05D004420 3.8e-23 112.1 193 36.3
MSTRG.1487 Avicennia marina HOM05D003597 ORTHO05D004420 5.0e-23 111.7 78 64.1
Gohir.D06G041800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 5.0e-23 111.7 184 36.4
Gorai.010G047000 Gossypium raimondii HOM05D003597 ORTHO05D004420 5.0e-23 111.7 184 36.4
Hund27061 Selenicereus undatus HOM05D003597 ORTHO05D004420 6.5e-23 111.3 192 40.1
FAN18G1206 Fragaria x ananassa HOM05D003597 ORTHO05D004420 8.5e-23 110.9 193 36.3
CAN.G255.18 Capsicum annuum HOM05D003597 ORTHO05D004420 1.9e-22 109.8 156 42.3
unitig_0.g2128 Utricularia gibba HOM05D003597 ORTHO05D004420 1.6e-21 106.7 73 60.3
CDE06G0857 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 3.6e-21 105.5 177 37.9
Potri.005G171800 Populus trichocarpa HOM05D003597 ORTHO05D004420 3.6e-21 105.5 149 40.3
FAN13G2877 Fragaria x ananassa HOM05D003597 ORTHO05D004420 1.4e-20 103.6 185 36.2
MBI03_g11136_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 1.4e-20 103.6 184 39.7
BcaB05g25080 Brassica carinata HOM05D003597 ORTHO05D004420 1.8e-20 103.2 135 41.5
A02p21890 Brassica napus HOM05D003597 ORTHO05D004420 3.0e-20 102.4 135 41.5
BraA02t07190Z Brassica rapa HOM05D003597 ORTHO05D004420 3.0e-20 102.4 135 41.5
PGR042G3777 Punica granatum HOM05D003597 ORTHO05D004420 5.2e-20 101.7 78 56.4
THA.LOC104813639 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 5.2e-20 101.7 78 57.7
C02p35180 Brassica napus HOM05D003597 ORTHO05D004420 6.7e-20 101.3 135 40.7
CDE06G1078 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 8.8e-20 100.9 187 35.3
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 8.8e-20 100.9 89 52.8
Aqoxy5G02474 Aquilegia oxysepala HOM05D003597 ORTHO05D004420 1.1e-19 100.5 82 53.7
Sc01g0001560 Simmondsia chinensis HOM05D003597 ORTHO05D004420 1.5e-19 100.1 188 37.2
BcaC03g15776 Brassica carinata HOM05D003597 ORTHO05D004420 2.0e-19 99.8 135 40.7
BolC2t09533H Brassica oleracea HOM05D003597 ORTHO05D004420 2.0e-19 99.8 135 40.7
AUR62023609 Chenopodium quinoa HOM05D003597 ORTHO05D004420 5.7e-19 98.2 179 35.8
CDE10G1110 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 7.4e-19 97.8 170 37.1
CARHR071300 Cardamine hirsuta HOM05D003597 ORTHO05D004420 2.2e-18 96.3 183 32.2
AUR62004693 Chenopodium quinoa HOM05D003597 ORTHO05D004420 2.2e-18 96.3 179 35.2
EL10Ac1g00040 Beta vulgaris HOM05D003597 ORTHO05D004420 2.8e-18 95.9 78 55.1
HPP92_004068 Vanilla planifolia HOM05D003597 ORTHO05D004420 2.8e-18 95.9 192 33.3
AT1G77800 Arabidopsis thaliana HOM05D003597 ORTHO05D004420 6.3e-18 94.7 78 51.3
BcaC08g47623 Brassica carinata HOM05D003597 ORTHO05D004420 1.1e-17 94.0 135 38.5
A07p43090 Brassica napus HOM05D003597 ORTHO05D004420 1.1e-17 94.0 135 38.5
C06p51740 Brassica napus HOM05D003597 ORTHO05D004420 1.1e-17 94.0 135 38.5
BolC6t40196H Brassica oleracea HOM05D003597 ORTHO05D004420 1.1e-17 94.0 135 38.5
BraA07t31831Z Brassica rapa HOM05D003597 ORTHO05D004420 1.1e-17 94.0 135 38.5
HPP92_004120 Vanilla planifolia HOM05D003597 ORTHO05D004420 1.1e-17 94.0 192 32.8
Sp5g32980 Schrenkiella parvula HOM05D003597 ORTHO05D004420 1.4e-17 93.6 184 33.2
Aa31LG4G7900 Aethionema arabicum HOM05D003597 ORTHO05D004420 3.1e-17 92.4 131 40.5
BcaB03g15920 Brassica carinata HOM05D003597 ORTHO05D004420 4.1e-17 92.0 135 37.8
Aqoxy5G02505 Aquilegia oxysepala HOM05D003597 ORTHO05D004420 5.3e-17 91.7 140 38.6
AL2G38040 Arabidopsis lyrata HOM05D003597 ORTHO05D004420 5.3e-17 91.7 184 32.6
Ah.05g172620 Amaranthus hybridus HOM05D003597 ORTHO05D004420 1.2e-16 90.5 187 33.7
ATR0121G011 Amborella trichopoda HOM05D003597 ORTHO05D004420 1.2e-16 90.5 198 34.3
Carub.0002s2470 Capsella rubella HOM05D003597 ORTHO05D004420 5.0e-15 85.1 184 31.0
SHI31223 Sapria himalayana HOM05D003597 ORTHO05D004420 6.5e-15 84.7 84 50.0
Zm00001eb256170 Zea mays HOM05D003597 ORTHO05D004420 1.9e-14 83.2 112 36.6
Thhalv10018012m.g Eutrema salsugineum HOM05D003597 ORTHO05D004420 5.5e-14 81.6 183 31.1
Actinidia27024 Actinidia chinensis HOM05D003597 ORTHO05D004420 7.2e-14 81.3 147 43.5
Zm00001eb193530 Zea mays HOM05D003597 ORTHO05D004420 7.2e-14 81.3 111 36.9
Zm00001eb278990 Zea mays HOM05D003597 ORTHO05D004420 1.5e-11 73.6 127 31.5
SEGI_09945 Sequoiadendron giganteum HOM05D003597 ORTHO05D004420 5.3e-09 65.1 78 38.5
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 4.5e-08 62.0 48 54.2
Actinidia02593 Actinidia chinensis HOM05D003597 ORTHO05D004420 5.9e-08 61.6 30 80.0
Lsat_1_v5_gn_4_129001 Lactuca sativa HOM05D000021 ORTHO05D000010 5.9e-08 61.6 109 41.3
Pp3c6_7710 Physcomitrium patens HOM05D000590 ORTHO05D005739 7.7e-08 61.2 87 33.3
Pp3c11_12900 Physcomitrium patens HOM05D003597 ORTHO05D004420 2.2e-07 59.7 81 34.6
Pp3c16_18950 Physcomitrium patens HOM05D000590 ORTHO05D005739 2.2e-07 59.7 79 34.2
SMO143G0053 Selaginella moellendorffii HOM05D000590 ORTHO05D005739 2.9e-07 59.3 86 31.4
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 5.0e-07 58.5 48 52.1
Pp3c5_20190 Physcomitrium patens HOM05D000590 ORTHO05D005739 5.0e-07 58.5 87 32.2
AagrBONN_evm.TU.Sc2ySwM_344.1361 Anthoceros agrestis HOM05D003597 ORTHO05D004420 8.5e-07 57.8 157 24.2
Zm00001eb308480 Zea mays HOM05D000590 ORTHO05D005739 8.5e-07 57.8 73 38.4
Os09g0134500 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D005739 1.1e-06 57.4 73 35.6
Actinidia23047 Actinidia chinensis HOM05D003597 ORTHO05D004420 1.5e-06 57.0 140 33.6
CBR_g9119 Chara braunii HOM05D000409 ORTHO05D000184 2.5e-06 56.2 79 34.2
CDE06G2342 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 3.2e-06 55.8 73 34.2
Cc00_g10020 Coffea canephora HOM05D000590 ORTHO05D005739 3.2e-06 55.8 79 36.7
Hma1.2p1_0412F.1_g147170 Hydrangea macrophylla HOM05D000590 ORTHO05D005739 3.2e-06 55.8 73 38.4
HPP92_008119 Vanilla planifolia HOM05D000590 ORTHO05D005739 3.2e-06 55.8 73 38.4
DCAR_029931 Daucus carota HOM05D000590 ORTHO05D005739 4.2e-06 55.5 73 39.7
Oeu029902.1 Olea europaea HOM05D000590 ORTHO05D005739 4.2e-06 55.5 73 38.4
PSO017G6033 Papaver somniferum HOM05D000590 ORTHO05D005739 5.5e-06 55.1 73 37.0
PSO675G4267 Papaver somniferum HOM05D000590 ORTHO05D005739 5.5e-06 55.1 73 37.0
A04p24160 Brassica napus HOM05D000590 ORTHO05D005739 7.2e-06 54.7 79 32.9
C04p60890 Brassica napus HOM05D000590 ORTHO05D005739 7.2e-06 54.7 79 32.9
BolC4t27580H Brassica oleracea HOM05D000590 ORTHO05D005739 7.2e-06 54.7 79 32.9
BraA04t17936Z Brassica rapa HOM05D000590 ORTHO05D005739 7.2e-06 54.7 79 32.9
ECA233G2054 Erigeron canadensis HOM05D000590 ORTHO05D005739 7.2e-06 54.7 73 37.0
HanXRQChr13g0390161 Helianthus annuus HOM05D000590 ORTHO05D005739 7.2e-06 54.7 73 37.0
MCO07G030 Micromonas commoda HOM05D003597 ORTHO05D006658 7.2e-06 54.7 78 32.1
SMO351G0114 Selaginella moellendorffii HOM05D003597 ORTHO05D004420 7.2e-06 54.7 186 28.5
Actinidia35907 Actinidia chinensis HOM05D000590 ORTHO05D005739 9.4e-06 54.3 79 34.2
CSS0029067 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D005739 9.4e-06 54.3 79 34.2
FAN07G2789 Fragaria x ananassa HOM05D000590 ORTHO05D005739 9.4e-06 54.3 73 39.7
Gohir.A10G136500 Gossypium hirsutum HOM05D000590 ORTHO05D005739 9.4e-06 54.3 73 38.4
Gohir.D10G130300 Gossypium hirsutum HOM05D000590 ORTHO05D005739 9.4e-06 54.3 73 38.4
Gorai.011G144000 Gossypium raimondii HOM05D000590 ORTHO05D005739 9.4e-06 54.3 73 38.4
SGA_v2.0_scaffold290G47293 Striga asiatica HOM05D000590 ORTHO05D005739 9.4e-06 54.3 73 38.4


User provided reference genes

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