Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 2.4e-96 355.5 182 100.0
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 3.6e-28 129.0 108 67.6
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 6.4e-25 118.2 120 57.5
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 7.1e-24 114.8 132 54.5
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 1.7e-22 110.2 131 47.3
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.9e-21 106.7 133 50.4
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 5.6e-21 105.1 125 48.8
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 9.6e-21 104.4 124 54.0
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 9.0e-19 97.8 132 48.5
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 1.2e-18 97.4 129 45.7
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 3.4e-18 95.9 125 44.8
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 1.7e-17 93.6 139 44.6
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 3.8e-17 92.4 135 47.4
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 8.4e-17 91.3 58 75.9
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.1e-16 90.9 109 51.4
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 7.1e-16 88.2 82 59.8
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 9.3e-16 87.8 104 50.0
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 1.2e-15 87.4 116 50.9
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.2e-15 87.4 116 50.9
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.2e-15 87.4 116 50.9
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.2e-15 87.4 116 50.9
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.1e-15 86.7 118 50.0
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 6.0e-15 85.1 134 41.8
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 7.9e-15 84.7 131 42.0
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.0e-14 84.3 132 39.4
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 1.3e-14 84.0 135 43.0
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.8e-14 83.6 55 72.7
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.3e-14 83.2 111 48.6
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 3.0e-14 82.8 55 72.7
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 5.1e-14 82.0 129 43.4
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 6.7e-14 81.6 132 41.7
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 6.7e-14 81.6 94 51.1
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 8.7e-14 81.3 123 48.8
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.5e-13 80.5 61 62.3
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.5e-13 80.5 113 45.1
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 2.5e-13 79.7 124 47.6
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 5.6e-13 78.6 132 41.7
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 5.6e-13 78.6 51 72.5
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 9.6e-13 77.8 57 68.4
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 9.6e-13 77.8 57 64.9
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 1.6e-12 77.0 78 46.2
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 1.6e-12 77.0 78 46.2
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 1.6e-12 77.0 78 46.2
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 1.6e-12 77.0 78 46.2
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 1.6e-12 77.0 78 46.2
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 1.6e-12 77.0 121 45.5
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.6e-12 77.0 123 48.0
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 2.1e-12 76.6 59 59.3
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 2.8e-12 76.3 78 46.2
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 2.8e-12 76.3 78 46.2
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 2.8e-12 76.3 78 46.2
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 2.8e-12 76.3 90 54.4
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 3.6e-12 75.9 78 46.2
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 3.6e-12 75.9 78 46.2
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 4.8e-12 75.5 77 46.8
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.8e-12 75.5 93 51.6
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.8e-12 75.5 93 51.6
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 4.8e-12 75.5 94 48.9
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 6.2e-12 75.1 50 70.0
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 8.1e-12 74.7 85 47.1
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 1.1e-11 74.3 52 65.4
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.1e-11 74.3 55 63.6
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 1.4e-11 73.9 83 50.6
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.8e-11 73.6 83 53.0
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 1.8e-11 73.6 50 66.0
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 2.4e-11 73.2 87 48.3
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 2.4e-11 73.2 68 57.4
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 4.0e-11 72.4 50 64.0
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 5.3e-11 72.0 78 43.6
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 5.3e-11 72.0 78 43.6
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 5.3e-11 72.0 78 43.6
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 9.0e-11 71.2 117 39.3
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.2e-10 70.9 116 41.4
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.2e-10 70.9 89 49.4
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 2.0e-10 70.1 87 47.1
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 2.0e-10 70.1 87 47.1
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 2.0e-10 70.1 87 47.1
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 2.0e-10 70.1 87 47.1
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 2.0e-10 70.1 75 48.0
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 3.4e-10 69.3 109 37.6
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 4.5e-10 68.9 87 46.0
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 5.8e-10 68.6 76 47.4
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 7.6e-10 68.2 78 44.9
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 7.6e-10 68.2 78 44.9
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 7.6e-10 68.2 76 47.4
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 9.9e-10 67.8 83 47.0
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.3e-09 67.4 128 41.4
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 1.7e-09 67.0 77 51.9
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 3.8e-09 65.9 84 46.4
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 3.8e-09 65.9 84 46.4
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 3.8e-09 65.9 84 46.4
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 3.8e-09 65.9 80 50.0
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 4.9e-09 65.5 106 42.5
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 8.4e-09 64.7 53 58.5
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 8.4e-09 64.7 53 58.5
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 8.4e-09 64.7 81 45.7
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.1e-08 64.3 50 62.0
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.4e-08 63.9 52 59.6
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 1.4e-08 63.9 84 50.0
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 1.4e-08 63.9 94 41.5
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.4e-08 63.9 78 41.0
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 3.2e-08 62.8 60 50.0
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.2e-08 62.4 103 36.9
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.2e-08 62.4 103 36.9
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 5.5e-08 62.0 81 40.7
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 7.1e-08 61.6 78 41.0
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 9.3e-08 61.2 113 38.1
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 2.7e-07 59.7 49 55.1
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.3e-06 57.4 102 36.3
Os01g0630300 Oryza sativa ssp. japonica HOM05D006973 ORTHO05D008636 2.3e-06 56.6 51 49.0
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 3.9e-06 55.8 78 42.3
Thecc.05G324400 Theobroma cacao HOM05D001624 ORTHO05D001530 6.7e-06 55.1 80 45.0
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 8.7e-06 54.7 48 50.0


User provided reference genes

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