Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0106300 Rhododendron simsii HOM05D003169 ORTHO05D003700 2.1e-146 522.3 265 100.0
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 7.2e-134 480.7 269 91.8
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 5.3e-121 438.0 262 84.0
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 1.5e-120 436.4 262 84.0
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 2.6e-120 435.6 262 82.8
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 5.9e-120 434.5 262 80.9
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 1.4e-118 429.9 262 80.2
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 9.4e-118 427.2 262 80.9
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 3.6e-117 425.2 263 79.5
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 8.0e-117 424.1 262 79.4
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 1.0e-116 423.7 262 80.2
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 1.4e-116 423.3 262 79.8
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 1.4e-116 423.3 262 79.4
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 1.4e-116 423.3 262 79.4
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 2.3e-116 422.5 344 68.0
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 8.8e-116 420.6 262 78.2
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 2.2e-114 416.0 262 76.7
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 2.2e-114 416.0 262 77.9
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 2.2e-114 416.0 262 77.9
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 2.2e-114 416.0 262 77.1
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 2.8e-114 415.6 262 76.3
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 2.8e-114 415.6 262 76.3
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 3.7e-114 415.2 262 78.6
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 4.8e-114 414.8 262 77.9
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 6.3e-114 414.5 262 77.5
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 8.2e-114 414.1 262 76.3
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 1.1e-113 413.7 262 76.3
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 2.4e-113 412.5 260 76.9
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 2.4e-113 412.5 262 75.6
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 5.3e-113 411.4 260 77.7
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 7.0e-113 411.0 260 77.7
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 7.0e-113 411.0 260 78.1
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 2.6e-112 409.1 262 76.7
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 3.5e-112 408.7 262 76.7
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 7.7e-112 407.5 262 77.1
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 7.7e-112 407.5 257 77.8
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 1.3e-111 406.8 262 75.6
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 1.7e-111 406.4 260 75.8
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 2.2e-111 406.0 262 74.8
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 2.2e-111 406.0 262 75.6
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 2.9e-111 405.6 262 74.8
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 3.8e-111 405.2 262 74.4
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 6.5e-111 404.4 262 75.2
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 8.5e-111 404.1 262 74.4
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 1.1e-110 403.7 262 73.7
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 1.5e-110 403.3 262 73.7
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 3.2e-110 402.1 262 75.2
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 3.2e-110 402.1 262 73.7
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 5.5e-110 401.4 262 73.7
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 7.2e-110 401.0 262 73.7
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 9.4e-110 400.6 263 73.4
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 9.4e-110 400.6 260 75.4
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 1.2e-109 400.2 263 73.0
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 1.2e-109 400.2 262 72.9
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 2.1e-109 399.4 260 74.6
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 3.6e-109 398.7 262 73.3
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 3.6e-109 398.7 262 75.6
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 3.6e-109 398.7 263 73.8
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 4.7e-109 398.3 262 76.0
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 6.1e-109 397.9 262 72.5
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 8.0e-109 397.5 262 73.3
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 8.0e-109 397.5 262 72.9
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 1.0e-108 397.1 262 74.4
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 1.0e-108 397.1 262 72.9
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 1.0e-108 397.1 262 72.9
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.4e-108 396.7 262 75.2
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 1.8e-108 396.4 262 72.9
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 2.3e-108 396.0 262 75.2
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 4.0e-108 395.2 260 73.8
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 5.2e-108 394.8 262 71.8
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 5.2e-108 394.8 262 74.0
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 8.8e-108 394.0 330 63.0
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 1.5e-107 393.3 262 74.8
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 1.5e-107 393.3 261 73.9
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.4e-107 391.7 267 71.9
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 4.4e-107 391.7 262 74.8
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 7.5e-107 391.0 267 71.5
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 6.3e-106 387.9 260 71.5
Oeu029455.1 Olea europaea HOM05D003169 ORTHO05D003700 3.1e-105 385.6 262 74.0
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 7.0e-105 384.4 262 73.3
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 9.1e-105 384.0 262 72.5
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 9.1e-105 384.0 286 67.1
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 2.7e-104 382.5 262 69.8
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 3.5e-104 382.1 262 73.3
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 1.3e-103 380.2 262 71.4
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.1e-102 377.1 308 62.3
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 3.2e-102 375.6 264 68.9
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 7.2e-102 374.4 257 72.4
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 1.6e-101 373.2 248 74.2
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 7.5e-99 364.4 264 69.3
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.2e-98 362.8 260 66.5
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 2.4e-97 359.4 262 67.2
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 4.1e-97 358.6 263 66.9
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 5.4e-97 358.2 262 66.4
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 1.6e-96 356.7 261 68.2
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 1.6e-96 356.7 261 68.2
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 3.5e-96 355.5 265 64.2
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 3.5e-96 355.5 262 64.1
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 1.0e-95 354.0 262 64.5
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 3.8e-95 352.1 296 62.8
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 1.5e-94 350.1 265 63.4
Peaxi162Scf00166g00077 Petunia axillaris HOM05D003169 ORTHO05D003700 4.7e-93 345.1 263 66.2
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 5.2e-92 341.7 263 65.4
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 8.9e-92 340.9 286 61.2
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 6.3e-90 334.7 293 55.6
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 1.9e-86 323.2 266 59.8
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 2.8e-85 319.3 261 60.2
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 5.8e-83 311.6 260 59.2
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 7.5e-83 311.2 256 64.5
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.6e-80 302.0 220 67.3
MBI18_g37376_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 2.3e-79 299.7 193 73.6
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 6.6e-79 298.1 264 57.6
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 9.5e-78 294.3 277 57.8
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 6.2e-77 291.6 260 58.1
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 4.4e-75 285.4 264 56.1
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 4.4e-75 285.4 264 56.1
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 7.5e-75 284.6 262 55.7
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 4.9e-74 282.0 180 77.8
Cpa.g.sc32.147 Carica papaya HOM05D003169 ORTHO05D003700 3.2e-73 279.3 181 76.2
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.9e-70 270.0 192 71.9
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 2.4e-65 253.1 256 51.6
Ciclev10006112m.g Citrus clementina HOM05D003169 ORTHO05D003700 4.9e-58 228.8 142 74.6
VMungo1127G0538 Vigna mungo HOM05D003169 ORTHO05D003700 3.5e-56 222.6 134 76.9
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 3.6e-53 212.6 255 45.1
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 9.9e-51 204.5 199 49.2
Nitab4.5_0003291g0040 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.7e-48 196.4 168 61.9
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 1.3e-45 187.6 117 74.4
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 2.1e-45 186.8 127 73.2
Oeu032680.1 Olea europaea HOM05D003169 ORTHO05D003700 3.6e-45 186.0 128 74.2
Nitab4.5_0009958g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 9.0e-44 181.4 105 77.1
COL.COLO4_25001 Corchorus olitorius HOM05D003169 ORTHO05D003700 2.6e-43 179.9 255 45.9
SEGI_09386 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 2.2e-34 150.2 127 58.3
SGA_v2.0_scaffold26G11263 Striga asiatica HOM05D003169 ORTHO05D003700 7.1e-33 145.2 83 81.9
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 1.1e-28 131.3 276 30.4
SMO358G0497 Selaginella moellendorffii HOM05D003169 ORTHO05D003700 3.8e-26 122.9 128 54.7
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 1.1e-25 121.3 87 69.0
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.4e-25 120.9 246 33.3
Actinidia33339 Actinidia chinensis HOM05D003169 ORTHO05D003700 3.2e-25 119.8 83 67.5
TPR.G40025 Trifolium pratense HOM05D003169 ORTHO05D003700 1.8e-23 114.0 98 56.1
BcaB02g08681 Brassica carinata HOM05D003169 ORTHO05D003700 2.0e-19 100.5 62 75.8
BcaC03g15885 Brassica carinata HOM05D014255 ORTHO05D015450 4.5e-19 99.4 78 62.8
TPR.G39754 Trifolium pratense HOM05D003169 ORTHO05D003700 1.9e-17 94.0 172 37.2
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 6.1e-16 89.0 130 41.5
C02p36530 Brassica napus HOM05D003169 ORTHO05D015450 5.1e-15 85.9 74 58.1
Dinv19571 Davidia involucrata HOM05D003169 ORTHO05D003700 1.1e-14 84.7 92 52.2
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 1.5e-14 84.3 241 27.4
TPR.G40298 Trifolium pratense HOM05D003169 ORTHO05D003700 1.5e-14 84.3 71 57.7
BolC2t09653H Brassica oleracea HOM05D003169 ORTHO05D015450 1.7e-13 80.9 74 55.4
TPR.G19390 Trifolium pratense HOM05D003169 ORTHO05D003700 1.7e-13 80.9 70 60.0
TPR.G7301 Trifolium pratense HOM05D003169 ORTHO05D003700 2.8e-13 80.1 55 63.6
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.1e-12 78.2 255 29.4
SEGI_25392 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 3.1e-12 76.6 62 54.8
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.5e-11 74.3 230 27.4
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 4.5e-11 72.8 255 24.3
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 1.3e-10 71.2 260 23.8
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 2.2e-10 70.5 41 75.6
BcaB02g10945 Brassica carinata HOM05D000798 ORTHO05D003700 5.1e-07 59.3 69 47.8
SEGI_01096 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 8.8e-07 58.5 52 50.0
BcaB02g10953 Brassica carinata HOM05D000798 ORTHO05D003700 2.6e-06 57.0 43 65.1


User provided reference genes

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