Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0102600 Rhododendron simsii HOM05D004132 ORTHO05D018840 1.8e-75 285.8 142 100.0
Rhsim08G0147200 Rhododendron simsii HOM05D004132 ORTHO05D018840 1.1e-40 170.2 146 63.7
Rhsim02G0198900 Rhododendron simsii HOM05D004132 ORTHO05D018840 7.2e-40 167.5 139 65.5
Rhsim01G0214100 Rhododendron simsii HOM05D004132 ORTHO05D018840 4.7e-39 164.9 114 77.2
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 3.7e-28 128.6 66 90.9
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 3.8e-25 118.6 66 84.8
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 5.0e-25 118.2 66 83.3
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 5.0e-25 118.2 66 84.8
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 5.0e-25 118.2 66 84.8
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 6.5e-25 117.9 66 83.3
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 6.5e-25 117.9 66 83.3
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 6.5e-25 117.9 66 80.3
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 1.1e-24 117.1 66 83.3
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 1.1e-24 117.1 66 83.3
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.1e-24 117.1 66 83.3
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.1e-24 117.1 66 83.3
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 1.1e-24 117.1 66 83.3
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 1.1e-24 117.1 66 83.3
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 1.1e-24 117.1 66 83.3
CSS0033836 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D018840 1.5e-24 116.7 93 64.5
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 1.5e-24 116.7 66 83.3
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 1.9e-24 116.3 66 83.3
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 1.9e-24 116.3 66 83.3
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 1.9e-24 116.3 66 81.8
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 2.5e-24 115.9 66 81.8
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 2.5e-24 115.9 66 81.8
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 3.2e-24 115.5 66 83.3
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 3.2e-24 115.5 66 81.8
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 4.2e-24 115.2 66 81.8
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 4.2e-24 115.2 66 81.8
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 4.2e-24 115.2 66 81.8
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 4.2e-24 115.2 66 81.8
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 4.2e-24 115.2 66 81.8
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 81.8
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 81.8
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 81.8
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 80.3
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 78.8
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 80.3
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 81.8
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 80.3
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 81.8
GSVIVG01020319001 Vitis vinifera HOM05D004132 ORTHO05D035098 5.5e-24 114.8 66 78.8
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 5.5e-24 114.8 66 81.8
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 7.2e-24 114.4 66 80.3
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 7.2e-24 114.4 66 80.3
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 7.2e-24 114.4 66 81.8
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 7.2e-24 114.4 66 81.8
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 81.8
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 81.8
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 80.3
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 80.3
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 81.8
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 81.8
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 80.3
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 80.3
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 81.8
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 9.4e-24 114.0 66 81.8
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 1.2e-23 113.6 66 80.3
FAN21G3660 Fragaria x ananassa HOM05D004132 ORTHO05D035098 1.2e-23 113.6 66 80.3
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 1.2e-23 113.6 66 78.8
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 1.2e-23 113.6 66 80.3
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 1.6e-23 113.2 66 80.3
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 1.6e-23 113.2 66 80.3
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 1.6e-23 113.2 66 80.3
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 1.6e-23 113.2 66 80.3
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 1.6e-23 113.2 66 78.8
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 2.1e-23 112.8 66 77.3
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.1e-23 112.8 66 77.3
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 2.7e-23 112.5 66 78.8
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 2.7e-23 112.5 66 78.8
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 2.7e-23 112.5 66 78.8
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 2.7e-23 112.5 66 80.3
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 2.7e-23 112.5 87 64.4
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 2.7e-23 112.5 87 64.4
QL04p095492 Quercus lobata HOM05D004132 ORTHO05D018840 3.6e-23 112.1 69 72.5
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 3.6e-23 112.1 66 80.3
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 4.7e-23 111.7 103 56.3
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 4.7e-23 111.7 66 80.3
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 4.7e-23 111.7 66 78.8
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 4.7e-23 111.7 66 78.8
GSVIVG01020335001 Vitis vinifera HOM05D004132 ORTHO05D006273 4.7e-23 111.7 66 78.8
GSVIVG01020347001 Vitis vinifera HOM05D004132 ORTHO05D006273 4.7e-23 111.7 66 78.8
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 4.7e-23 111.7 66 80.3
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 6.1e-23 111.3 66 77.3
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 6.1e-23 111.3 66 78.8
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 6.1e-23 111.3 66 78.8
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 6.1e-23 111.3 66 80.3
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 6.1e-23 111.3 61 83.6
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 6.1e-23 111.3 66 78.8
Oeu056055.1 Olea europaea HOM05D004132 ORTHO05D006273 6.1e-23 111.3 66 80.3
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 8.0e-23 110.9 66 77.3
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 8.0e-23 110.9 66 78.8
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 1.0e-22 110.5 66 78.8
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 1.4e-22 110.2 66 77.3
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 1.4e-22 110.2 66 77.3
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 1.4e-22 110.2 66 77.3
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 1.8e-22 109.8 66 80.3
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 2.3e-22 109.4 66 81.8
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 2.3e-22 109.4 66 80.3
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 2.3e-22 109.4 66 77.3
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 3.0e-22 109.0 66 78.8
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 3.0e-22 109.0 66 78.8
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 3.0e-22 109.0 66 78.8
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 3.0e-22 109.0 66 77.3
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 4.0e-22 108.6 78 66.7
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 5.2e-22 108.2 66 74.2
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 6.8e-22 107.8 61 82.0
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 6.8e-22 107.8 66 77.3
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 6.8e-22 107.8 103 54.4
SEGI_05248 Sequoiadendron giganteum HOM05D004132 ORTHO05D006273 8.8e-22 107.5 66 74.2
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 1.5e-21 106.7 66 74.2
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 1.5e-21 106.7 66 77.3
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 1.5e-21 106.7 66 77.3
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 1.5e-21 106.7 66 77.3
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 1.5e-21 106.7 66 77.3
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 1.5e-21 106.7 66 77.3
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 1.5e-21 106.7 103 53.4
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 2.6e-21 105.9 83 66.3
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 2.6e-21 105.9 66 74.2
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 2.6e-21 105.9 66 77.3
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 3.4e-21 105.5 83 66.3
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 3.4e-21 105.5 83 66.3
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 3.4e-21 105.5 83 66.3
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 3.4e-21 105.5 83 66.3
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 4.4e-21 105.1 66 72.7
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 5.7e-21 104.8 66 75.8
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 5.7e-21 104.8 66 75.8
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 9.8e-21 104.0 66 71.2
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 1.3e-20 103.6 66 75.8
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 1.3e-20 103.6 66 75.8
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 6.3e-20 101.3 79 62.0
Oeu050047.1 Olea europaea HOM05D004132 ORTHO05D018840 8.3e-20 100.9 69 68.1
Hma1.2p1_0634F.1_g192870 Hydrangea macrophylla HOM05D004132 ORTHO05D018840 3.1e-19 99.0 94 55.3
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 7.0e-19 97.8 61 73.8
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 2.0e-18 96.3 66 63.6
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 1.0e-17 94.0 66 68.2
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 2.3e-17 92.8 79 59.5
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 7.2e-16 87.8 56 67.9
Rhsim07G0156000 Rhododendron simsii HOM05D004132 ORTHO05D340189 1.4e-11 73.6 44 88.6
Haze_26151 Corylus avellana HOM05D004132 ORTHO05D006273 9.2e-11 70.9 70 47.1
Cfa022583 Carpinus fangiana HOM05D004132 ORTHO05D006273 3.3e-08 62.4 66 45.5
Hma1.2p1_0666F.1_g199485 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 1.8e-06 56.6 34 70.6
ECA233G2583 Erigeron canadensis HOM05D004132 ORTHO05D006273 4.0e-06 55.5 31 74.2


User provided reference genes

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