Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 3.3e-311 1070.8 536 100.0
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.8e-270 934.9 534 90.1
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.2e-266 921.4 514 91.2
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.7e-254 882.5 539 83.9
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 8.2e-254 880.2 541 83.2
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.3e-243 846.3 541 79.9
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.1e-239 833.2 535 78.5
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.0e-239 832.4 476 85.7
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.4e-239 831.2 543 77.2
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.2e-238 828.9 538 78.4
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.1e-237 826.6 543 77.3
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.8e-237 825.9 477 84.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 9.1e-237 823.5 538 77.1
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 3.5e-236 821.6 545 78.0
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 3.5e-236 821.6 538 77.0
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.0e-235 820.1 476 83.8
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.3e-235 819.7 482 82.4
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.7e-235 819.3 507 79.5
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.2e-235 818.9 543 76.2
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.9e-235 818.5 479 82.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 8.5e-235 817.0 476 84.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.1e-234 816.6 477 84.1
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.5e-234 816.2 536 77.4
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.9e-234 815.8 508 80.5
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 7.2e-234 813.9 477 83.2
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 7.2e-234 813.9 480 82.7
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.2e-233 813.1 476 83.8
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-233 813.1 548 75.9
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.6e-233 811.6 548 76.1
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 6.1e-233 810.8 545 75.0
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 6.1e-233 810.8 535 76.4
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.0e-232 810.1 479 82.9
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.8e-232 809.3 477 81.6
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.8e-232 809.3 537 77.8
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 8.8e-232 807.0 530 77.4
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 8.8e-232 807.0 485 82.1
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.5e-231 806.2 517 78.5
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.0e-231 805.8 475 83.4
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 2.0e-231 805.8 536 76.1
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.6e-231 805.4 536 75.9
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.4e-231 805.1 528 77.7
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 3.4e-231 805.1 538 75.1
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 4.4e-231 804.7 502 80.3
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 4.4e-231 804.7 537 76.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 9.8e-231 803.5 513 77.2
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 9.8e-231 803.5 536 75.9
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.7e-230 802.7 539 75.1
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 1.7e-230 802.7 536 75.7
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 4.8e-230 801.2 529 76.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 6.3e-230 800.8 528 77.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 6.3e-230 800.8 489 81.8
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 8.3e-230 800.4 528 76.1
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.1e-229 800.0 475 83.2
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.4e-229 799.7 516 77.3
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.4e-229 798.9 476 81.5
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 4.1e-229 798.1 476 82.6
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.1e-229 798.1 532 75.6
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 7.0e-229 797.3 527 76.1
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.2e-228 796.6 546 74.5
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.6e-228 796.2 539 75.0
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.0e-227 793.5 475 82.1
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.0e-227 793.5 474 81.2
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 2.2e-227 792.3 493 78.5
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.8e-227 791.6 549 74.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 8.5e-227 790.4 495 79.4
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.5e-226 789.6 544 74.8
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.5e-226 789.6 486 79.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 3.2e-226 788.5 531 75.7
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.2e-226 787.3 494 76.9
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.2e-225 786.6 476 79.2
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.1e-225 785.8 532 75.6
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 3.6e-225 785.0 474 80.8
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 6.1e-225 784.3 527 75.3
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 8.0e-225 783.9 535 73.6
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.8e-224 782.7 505 76.4
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.3e-224 782.3 530 74.0
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.2e-223 780.0 476 79.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 4.4e-223 778.1 511 75.5
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 3.7e-222 775.0 526 74.1
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-221 771.9 520 73.3
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 3.1e-221 771.9 572 70.6
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.2e-220 770.0 475 78.1
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 2.7e-220 768.8 530 71.7
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.5e-220 768.5 518 73.6
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 7.7e-220 767.3 535 71.2
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.0e-219 766.9 474 77.2
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.7e-219 766.1 475 77.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.3e-219 765.8 518 73.2
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 2.9e-219 765.4 560 70.7
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-219 765.4 520 72.5
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 2.9e-219 765.4 527 73.6
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 5.0e-219 764.6 519 73.0
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.1e-218 763.5 518 73.2
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.9e-218 762.7 539 71.4
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 5.6e-218 761.1 519 73.0
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 5.6e-218 761.1 579 67.4
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.2e-217 760.0 492 75.8
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.7e-217 758.1 481 79.4
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.2e-216 754.6 512 72.1
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 6.8e-216 754.2 548 71.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.8e-209 732.3 529 70.1
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.8e-208 729.6 540 70.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 2.2e-206 722.6 476 73.7
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 2.9e-206 722.2 459 81.5
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 6.4e-206 721.1 486 72.0
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.9e-205 719.5 531 68.2
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.6e-204 714.9 430 80.2
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.3e-203 712.6 475 74.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.9e-203 711.8 423 81.8
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 7.3e-202 707.6 449 79.7
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 2.8e-201 705.7 498 69.1
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 6.8e-200 701.0 462 78.4
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.2e-198 696.0 473 70.6
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 8.3e-198 694.1 478 71.3
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.6e-195 684.1 470 73.6
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-194 683.7 482 73.9
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 6.8e-192 674.5 493 69.8
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 7.1e-189 664.5 388 83.2
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 2.3e-187 659.4 388 82.7
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 2.4e-184 649.4 521 64.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-182 642.9 503 66.8
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 4.9e-182 641.7 795 48.4
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.7e-180 636.0 382 83.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 3.0e-179 632.5 468 63.7
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-174 616.3 441 69.8
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 6.0e-172 608.2 474 66.9
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-171 607.1 525 60.8
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 8.1e-169 597.8 352 84.7
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.0e-168 595.5 430 74.9
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 8.8e-123 444.9 312 74.0
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 7.0e-120 435.3 372 62.6
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.2e-114 417.9 253 81.4
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 3.3e-101 373.2 308 61.0
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-97 360.9 246 74.8
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 3.9e-94 349.7 469 40.3
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.2e-90 338.2 476 38.7
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 3.4e-90 336.7 201 81.6
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.3e-85 320.1 468 37.6
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 4.4e-82 309.7 233 67.4
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.0e-67 260.0 415 41.0
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.3e-62 244.2 144 81.2
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.4e-59 235.0 197 66.0
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.2e-55 221.9 185 62.2
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 5.6e-53 213.0 165 66.7
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 9.6e-53 212.2 211 55.0
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.8e-44 184.1 98 87.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 3.7e-44 183.7 264 42.0
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-43 182.2 146 59.6
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.2e-42 178.7 138 60.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.3e-41 175.3 387 30.0
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.7e-39 167.5 95 86.3
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.9e-37 161.4 137 61.3
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.3e-36 158.7 129 62.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-33 148.7 81 87.7
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-31 141.4 93 79.6
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 6.3e-28 129.8 74 85.1
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 3.1e-27 127.5 100 63.0
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.7e-25 121.7 305 29.2
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.7e-25 121.7 100 62.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-14 85.1 56 62.5
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 2.2e-12 78.2 41 85.4
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 3.7e-12 77.4 67 53.7
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 6.3e-12 76.6 97 48.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 8.2e-12 76.3 47 70.2
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.2e-07 62.4 35 74.3
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 4.7e-07 60.5 40 72.5
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 1.8e-06 58.5 34 73.5


User provided reference genes

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