Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0021500 Rhododendron simsii HOM05D005670 ORTHO05D007612 6.9e-136 487.3 239 100.0
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 6.6e-78 294.7 199 76.9
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 5.8e-74 281.6 199 72.9
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 8.9e-67 257.7 199 66.3
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 1.3e-65 253.8 199 67.8
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 1.6e-63 246.9 199 63.8
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 6.0e-63 245.0 198 63.6
Haze_05742 Corylus avellana HOM05D005670 ORTHO05D007612 1.0e-62 244.2 200 63.5
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 1.1e-61 240.7 199 64.3
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 5.6e-61 238.4 199 61.8
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 1.6e-60 236.9 199 60.8
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 6.2e-60 235.0 199 61.3
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 6.2e-60 235.0 199 61.3
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 1.1e-59 234.2 199 58.8
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 1.1e-59 234.2 199 63.3
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 1.4e-59 233.8 199 61.3
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.4e-59 233.8 199 61.3
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 1.8e-59 233.4 199 60.3
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 1.8e-59 233.4 199 61.3
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 3.1e-59 232.6 199 61.8
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 4.0e-59 232.3 198 61.6
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 4.0e-59 232.3 199 61.3
Rhsim04G0080800 Rhododendron simsii HOM05D000001 ORTHO05D000003 5.2e-59 231.9 187 67.9
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 6.8e-59 231.5 199 60.8
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 6.8e-59 231.5 234 53.8
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 8.9e-59 231.1 199 60.3
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 8.9e-59 231.1 199 60.8
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 1.5e-58 230.3 199 59.8
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 2.0e-58 229.9 199 59.8
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 2.0e-58 229.9 199 61.3
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 2.6e-58 229.6 199 58.8
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 3.4e-58 229.2 199 59.8
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 3.4e-58 229.2 199 59.8
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 5.8e-58 228.4 200 61.5
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 7.5e-58 228.0 200 60.0
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 1.3e-57 227.3 199 61.8
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 2.2e-57 226.5 198 60.1
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 3.7e-57 225.7 199 58.8
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 4.9e-57 225.3 199 60.3
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 6.4e-57 224.9 199 58.3
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 6.4e-57 224.9 199 58.3
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 1.1e-56 224.2 199 60.3
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 1.4e-56 223.8 198 60.1
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 1.9e-56 223.4 200 61.0
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 2.4e-56 223.0 200 60.0
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 2.4e-56 223.0 198 60.6
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 2.4e-56 223.0 199 57.8
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 3.2e-56 222.6 200 59.5
FvH4_5g20981 Fragaria vesca HOM05D005670 ORTHO05D007612 4.1e-56 222.2 202 58.9
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 4.1e-56 222.2 199 59.8
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 5.4e-56 221.9 200 60.0
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 7.1e-56 221.5 199 60.3
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 9.2e-56 221.1 199 59.3
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 1.2e-55 220.7 199 57.3
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 1.6e-55 220.3 199 56.8
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 1.6e-55 220.3 201 61.2
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 4.6e-55 218.8 200 59.0
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 4.6e-55 218.8 198 58.6
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 6.0e-55 218.4 198 59.1
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 7.8e-55 218.0 200 59.0
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 7.8e-55 218.0 198 58.6
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 1.0e-54 217.6 199 57.8
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 2.3e-54 216.5 200 58.5
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 2.3e-54 216.5 200 58.0
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 2.3e-54 216.5 200 58.5
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 2.3e-54 216.5 200 58.0
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 3.0e-54 216.1 199 57.3
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 3.0e-54 216.1 199 57.3
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 6.6e-54 214.9 196 57.1
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 6.6e-54 214.9 198 58.1
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 1.1e-53 214.2 233 52.4
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 1.5e-53 213.8 199 56.8
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 1.5e-53 213.8 198 58.1
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 2.5e-53 213.0 199 56.8
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 2.5e-53 213.0 198 57.1
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 2.5e-53 213.0 198 55.6
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 4.3e-53 212.2 199 56.8
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 5.6e-53 211.8 199 56.3
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 5.6e-53 211.8 199 53.3
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 7.3e-53 211.5 199 55.3
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 9.5e-53 211.1 199 56.8
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 1.2e-52 210.7 202 54.5
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 2.1e-52 209.9 198 56.6
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 2.8e-52 209.5 199 53.3
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 3.6e-52 209.1 199 55.3
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 1.1e-51 207.6 198 56.1
Os04g0680400 Oryza sativa ssp. japonica HOM05D005670 ORTHO05D007612 1.1e-51 207.6 199 53.8
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 1.8e-51 206.8 199 55.3
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 3.1e-51 206.1 199 53.8
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 3.1e-51 206.1 198 55.6
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 4.0e-51 205.7 199 54.3
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 1.2e-50 204.1 199 54.3
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 3.4e-50 202.6 199 53.3
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 7.6e-50 201.4 199 54.8
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 9.9e-50 201.1 199 53.8
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 1.3e-49 200.7 199 53.8
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 3.2e-48 196.1 199 52.3
Duzib192G0381 Durio zibethinus HOM05D005670 ORTHO05D007612 3.9e-46 189.1 176 56.2
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 3.9e-46 189.1 204 50.5
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 3.9e-46 189.1 204 50.5
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 8.7e-46 188.0 198 52.0
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 1.1e-45 187.6 199 51.3
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 2.8e-44 183.0 210 49.0
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 2.0e-42 176.8 199 50.3
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 6.0e-39 165.2 203 48.3
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 2.3e-38 163.3 198 47.5
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 3.6e-36 156.0 201 43.8
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 1.1e-35 154.5 199 40.2
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.8e-35 153.7 201 41.8
Eucgr.E03117 Eucalyptus grandis HOM05D005670 ORTHO05D007612 5.3e-35 152.1 197 45.7
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 2.6e-34 149.8 200 42.5
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 1.3e-33 147.5 196 43.4
Actinidia25619 Actinidia chinensis HOM05D005670 ORTHO05D007612 1.4e-32 144.1 137 60.6
Actinidia39456 Actinidia chinensis HOM05D005670 ORTHO05D007612 1.4e-32 144.1 137 60.6
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 7.1e-32 141.7 91 74.7
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 4.8e-28 129.0 160 47.5
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 1.4e-27 127.5 200 37.0
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 5.3e-27 125.6 196 39.8
Pp3c17_10590 Physcomitrium patens HOM05D005670 ORTHO05D007612 2.4e-24 116.7 201 36.3
Cfa026875 Carpinus fangiana HOM05D005670 ORTHO05D007612 3.1e-19 99.8 207 30.4
Rhsim02G0011400 Rhododendron simsii HOM05D005670 ORTHO05D007612 3.4e-18 96.3 68 73.5
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 5.7e-13 79.0 91 46.2
BcaC04g21348 Brassica carinata HOM05D005670 ORTHO05D031838 2.2e-12 77.0 56 64.3
FAN08G0180 Fragaria x ananassa HOM05D005670 ORTHO05D007612 2.2e-12 77.0 70 54.3
BolC9t56127H Brassica oleracea HOM05D005670 ORTHO05D031838 3.7e-12 76.3 56 64.3
C09p32920 Brassica napus HOM05D005670 ORTHO05D031838 4.1e-11 72.8 51 66.7
SHI01971 Sapria himalayana HOM05D005670 ORTHO05D007612 3.4e-10 69.7 53 64.2


User provided reference genes

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