Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0019100 Rhododendron simsii HOM05D001348 ORTHO05D018008 1.2e-118 429.9 215 100.0
Rhsim06G0019200 Rhododendron simsii HOM05D001348 ORTHO05D018008 5.2e-50 201.8 111 92.8
Rhsim06G0019000 Rhododendron simsii HOM05D001348 ORTHO05D018008 2.2e-48 196.4 110 92.7
Rhsim06G0006900 Rhododendron simsii HOM05D001348 ORTHO05D002788 5.6e-36 155.2 218 49.1
Actinidia15493 Actinidia chinensis HOM05D001348 ORTHO05D002788 2.6e-25 119.8 110 57.3
Actinidia17043 Actinidia chinensis HOM05D001348 ORTHO05D002788 2.5e-20 103.2 108 52.8
Hma1.2p1_0507F.1_g168550 Hydrangea macrophylla HOM05D001348 ORTHO05D002788 1.3e-16 90.9 112 49.1
GSVIVG01008673001 Vitis vinifera HOM05D001348 ORTHO05D002788 2.9e-16 89.7 111 48.6
Haze_22785 Corylus avellana HOM05D001348 ORTHO05D002788 4.9e-16 89.0 107 49.5
Hma1.2p1_0877F.1_g231620 Hydrangea macrophylla HOM05D001348 ORTHO05D018008 9.3e-15 84.7 115 47.0
Eucgr.F01770 Eucalyptus grandis HOM05D001348 ORTHO05D002788 7.9e-14 81.6 118 47.5
Cfa014084 Carpinus fangiana HOM05D001348 ORTHO05D002788 1.0e-13 81.3 122 46.7
Nitab4.5_0000588g0040 Nicotiana tabacum HOM05D001348 ORTHO05D002788 1.3e-13 80.9 81 50.6
Hma1.2p1_0956F.1_g241285 Hydrangea macrophylla HOM05D001348 ORTHO05D018008 2.3e-13 80.1 89 50.6
Hma1.2p1_0956F.1_g241290 Hydrangea macrophylla HOM05D001348 ORTHO05D018008 2.3e-13 80.1 89 50.6
Sed0027114 Sechium edule HOM05D001348 ORTHO05D002788 3.0e-13 79.7 110 45.5
Cpa.g.sc801.2 Carica papaya HOM05D001348 ORTHO05D002788 6.7e-13 78.6 97 47.4
Manes.05G133800 Manihot esculenta HOM05D001348 ORTHO05D002788 8.7e-13 78.2 125 42.4
Potri.005G251000 Populus trichocarpa HOM05D001348 ORTHO05D002788 8.7e-13 78.2 123 42.3
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 8.7e-13 78.2 82 52.4
Duzib093G1181 Durio zibethinus HOM05D001348 ORTHO05D002788 1.1e-12 77.8 82 52.4
Oeu041160.1 Olea europaea HOM05D001348 ORTHO05D018008 1.1e-12 77.8 124 41.1
CiPaw.07G138400 Carya illinoinensis HOM05D001348 ORTHO05D002788 1.5e-12 77.4 101 45.5
MBI08_g24272_MAGBIO Magnolia biondii HOM05D001348 ORTHO05D002788 1.5e-12 77.4 102 48.0
TAR628G1023 Trochodendron aralioides HOM05D001348 ORTHO05D002788 1.5e-12 77.4 110 42.7
Cc10_g00640 Coffea canephora HOM05D001348 ORTHO05D002788 1.9e-12 77.0 82 47.6
COL.COLO4_05220 Corchorus olitorius HOM05D001348 ORTHO05D002788 1.9e-12 77.0 103 44.7
PGSC0003DMG400009981 Solanum tuberosum HOM05D001348 ORTHO05D002788 1.9e-12 77.0 82 50.0
Thecc.08G059600 Theobroma cacao HOM05D001348 ORTHO05D002788 1.9e-12 77.0 115 47.0
Gohir.A02G084500 Gossypium hirsutum HOM05D001348 ORTHO05D002788 2.5e-12 76.6 82 51.2
Gohir.D02G100400 Gossypium hirsutum HOM05D001348 ORTHO05D002788 2.5e-12 76.6 82 51.2
Gorai.005G113800 Gossypium raimondii HOM05D001348 ORTHO05D002788 2.5e-12 76.6 82 51.2
Prupe.1G354000 Prunus persica HOM05D001348 ORTHO05D002788 2.5e-12 76.6 114 46.5
SalBow7G2313 Salvia bowleyana HOM05D001348 ORTHO05D002788 2.5e-12 76.6 86 48.8
Sopen04g036000 Solanum pennellii HOM05D001348 ORTHO05D002788 2.5e-12 76.6 82 51.2
MSTRG.979 Avicennia marina HOM05D001348 ORTHO05D002788 7.4e-12 75.1 85 47.1
TWI12G1367 Tripterygium wilfordii HOM05D001348 ORTHO05D002788 7.4e-12 75.1 105 45.7
Solyc04g082400.3 Solanum lycopersicum HOM05D001348 ORTHO05D002788 9.6e-12 74.7 85 50.6
ClCG08G009400 Citrullus lanatus HOM05D001348 ORTHO05D002788 1.3e-11 74.3 73 52.1
ECA233G1445 Erigeron canadensis HOM05D001348 ORTHO05D002788 1.6e-11 73.9 83 47.0
HanXRQChr13g0409701 Helianthus annuus HOM05D001348 ORTHO05D002788 1.6e-11 73.9 51 68.6
Glyma.04G017700 Glycine max HOM05D001348 ORTHO05D002788 2.8e-11 73.2 98 48.0
THA.LOC104825424 Tarenaya hassleriana HOM05D001348 ORTHO05D002788 2.8e-11 73.2 211 32.7
Atru.chr13.139 Acer truncatum HOM05D001348 ORTHO05D002788 3.6e-11 72.8 50 70.0
CAN.G311.118 Capsicum annuum HOM05D001348 ORTHO05D002788 4.8e-11 72.4 166 34.9
SGA_v2.0_scaffold82G26249 Striga asiatica HOM05D001348 ORTHO05D002788 4.8e-11 72.4 101 45.5
Aa31sc108G30 Aethionema arabicum HOM05D001348 ORTHO05D002788 6.2e-11 72.0 188 31.4
Medtr3g115340 Medicago truncatula HOM05D001348 ORTHO05D002788 6.2e-11 72.0 86 50.0
Sc26g0004640 Simmondsia chinensis HOM05D001348 ORTHO05D002788 6.2e-11 72.0 111 45.0
AUR62036860 Chenopodium quinoa HOM05D001348 ORTHO05D002788 8.1e-11 71.6 192 33.9
DCAR_016772 Daucus carota HOM05D001348 ORTHO05D002788 8.1e-11 71.6 50 68.0
Lj4C10G12 Lonicera japonica HOM05D001348 ORTHO05D002788 8.1e-11 71.6 86 53.5
unitig_32.g11165 Utricularia gibba HOM05D001348 ORTHO05D002788 8.1e-11 71.6 71 56.3
Peaxi162Scf00893g00013 Petunia axillaris HOM05D001348 ORTHO05D002788 1.4e-10 70.9 94 41.5
TPR.G38178 Trifolium pratense HOM05D001348 ORTHO05D002788 1.4e-10 70.9 74 52.7
Zm00001eb228530 Zea mays HOM05D001348 ORTHO05D002788 1.4e-10 70.9 77 49.4
Psat0s2670g0080 Pisum sativum HOM05D001348 ORTHO05D002788 1.8e-10 70.5 108 46.3
AUR62040796 Chenopodium quinoa HOM05D001348 ORTHO05D002788 2.4e-10 70.1 217 33.6
Lj1g0023484 Lotus japonicus HOM05D001348 ORTHO05D002788 2.4e-10 70.1 75 49.3
Ca_15431_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 3.1e-10 69.7 86 50.0
Ca_15456_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 3.1e-10 69.7 86 50.0
MELO3C026536.2 Cucumis melo HOM05D001348 ORTHO05D002788 3.1e-10 69.7 90 45.6
DCAR_013916 Daucus carota HOM05D001348 ORTHO05D002788 3.1e-10 69.7 103 46.6
HanXRQChr13g0409691 Helianthus annuus HOM05D001348 ORTHO05D002788 3.1e-10 69.7 94 46.8
Os06g0726400 Oryza sativa ssp. japonica HOM05D001348 ORTHO05D002788 3.1e-10 69.7 51 62.7
VMungo1309G1980 Vigna mungo HOM05D001348 ORTHO05D002788 3.1e-10 69.7 91 48.4
Aqoxy6G01706 Aquilegia oxysepala HOM05D001348 ORTHO05D002788 4.0e-10 69.3 100 46.0
CANSAT25G0108 Cannabis sativa HOM05D001348 ORTHO05D002788 4.0e-10 69.3 50 64.0
CDE02G0218 Ceratophyllum demersum HOM05D001348 ORTHO05D002788 4.0e-10 69.3 131 41.2
Lsat_1_v5_gn_8_26220 Lactuca sativa HOM05D001348 ORTHO05D002788 5.3e-10 68.9 85 45.9
QL02p014252 Quercus lobata HOM05D001348 ORTHO05D002788 5.3e-10 68.9 94 41.5
RcHm_v2.0_Chr6g0304311 Rosa chinensis HOM05D001348 ORTHO05D002788 5.3e-10 68.9 99 44.4
EL10Ac1g01952 Beta vulgaris HOM05D001348 ORTHO05D002788 6.9e-10 68.6 228 31.6
SEGI_16586 Sequoiadendron giganteum HOM05D001348 ORTHO05D002788 6.9e-10 68.6 135 40.0
Ah.00g000830 Amaranthus hybridus HOM05D001348 ORTHO05D002788 9.0e-10 68.2 131 36.6
Migut.C00387 Erythranthe guttata HOM05D001348 ORTHO05D002788 9.0e-10 68.2 79 48.1
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 9.0e-10 68.2 151 37.7
Ciclev10000256m.g Citrus clementina HOM05D001348 ORTHO05D002788 1.2e-09 67.8 98 44.9
Lalb_Chr11g0061611 Lupinus albus HOM05D001348 ORTHO05D002788 1.5e-09 67.4 68 50.0
Phvul.009G011000 Phaseolus vulgaris HOM05D001348 ORTHO05D002788 1.5e-09 67.4 82 50.0
ATR0661G525 Amborella trichopoda HOM05D001348 ORTHO05D002788 2.0e-09 67.0 52 61.5
CsaV3_6G031530 Cucumis sativus L. HOM05D001348 ORTHO05D002788 2.6e-09 66.6 109 43.1
arahy.Tifrunner.gnm1.ann1.M043T1 Arachis hypogaea HOM05D001348 ORTHO05D002788 4.5e-09 65.9 106 42.5
FvH4_2g37410 Fragaria vesca HOM05D001348 ORTHO05D002788 1.3e-08 64.3 63 54.0
FAN27G2210 Fragaria x ananassa HOM05D001348 ORTHO05D002788 1.3e-08 64.3 63 54.0
Nn5g30949 Nelumbo nucifera HOM05D001348 ORTHO05D002788 1.3e-08 64.3 28 96.4
vmacro21808 Vaccinium macrocarpon HOM05D001348 ORTHO05D002788 1.3e-08 64.3 79 53.2
arahy.Tifrunner.gnm1.ann1.7NA3QC Arachis hypogaea HOM05D001348 ORTHO05D002788 2.2e-08 63.5 107 41.1
FAN20G0725 Fragaria x ananassa HOM05D001348 ORTHO05D002788 2.2e-08 63.5 63 52.4
SMO367G1299 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 2.9e-08 63.2 62 53.2
FAN15G2765 Fragaria x ananassa HOM05D001348 ORTHO05D002788 3.8e-08 62.8 63 52.4
FvH4_2g37381 Fragaria vesca HOM05D001348 ORTHO05D002788 4.9e-08 62.4 54 57.4
Hma1.2p1_0193F.1_g084000 Hydrangea macrophylla HOM05D001348 ORTHO05D018008 4.9e-08 62.4 160 36.2
PSO541G3094 Papaver somniferum HOM05D001348 ORTHO05D002788 8.4e-08 61.6 110 39.1
PGR083G0741 Punica granatum HOM05D001348 ORTHO05D002788 2.4e-07 60.1 157 35.0
Dinv17713 Davidia involucrata HOM05D000003 ORTHO05D000006 7.9e-06 55.1 100 34.0
Dinv41004 Davidia involucrata HOM05D000003 ORTHO05D000004 7.9e-06 55.1 100 34.0


User provided reference genes

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