Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.8e-174 615.1 301 100.0
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 3.3e-167 591.7 306 96.1
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.2e-94 349.7 639 40.4
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.0e-83 314.3 625 37.8
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 3.6e-81 305.8 640 36.1
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 2.6e-79 299.7 639 35.8
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 6.3e-78 295.0 640 35.2
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 1.4e-77 293.9 639 34.9
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 1.2e-76 290.8 639 35.2
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 1.6e-76 290.4 639 34.6
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 5.9e-76 288.5 639 35.4
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 7.7e-76 288.1 637 35.0
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 2.3e-75 286.6 639 34.6
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 2.9e-75 286.2 639 34.7
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 8.6e-75 284.6 639 35.2
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 3.3e-74 282.7 639 34.3
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 4.2e-74 282.3 637 34.4
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 4.2e-74 282.3 637 34.4
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 4.2e-74 282.3 639 34.7
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 5.5e-74 282.0 639 34.1
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.6e-73 280.4 638 34.2
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 2.1e-73 280.0 639 33.0
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 2.1e-73 280.0 625 33.8
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 2.8e-73 279.6 640 34.2
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 2.8e-73 279.6 639 34.6
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 3.6e-73 279.3 640 33.4
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 3.6e-73 279.3 625 35.5
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 3.6e-73 279.3 639 33.8
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 4.7e-73 278.9 579 36.3
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 4.7e-73 278.9 639 34.3
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 6.1e-73 278.5 639 34.1
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 6.1e-73 278.5 639 34.1
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 6.1e-73 278.5 639 34.3
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 8.0e-73 278.1 639 33.8
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 8.0e-73 278.1 643 33.9
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 1.4e-72 277.3 639 33.8
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 1.8e-72 276.9 640 34.1
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 2.3e-72 276.6 641 34.2
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 2.3e-72 276.6 639 33.0
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 2.3e-72 276.6 638 33.9
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 3.0e-72 276.2 639 34.4
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 3.0e-72 276.2 639 33.5
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 4.0e-72 275.8 639 33.3
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 4.0e-72 275.8 642 34.3
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 5.2e-72 275.4 640 33.1
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 5.2e-72 275.4 642 34.1
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 6.8e-72 275.0 639 33.3
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 6.8e-72 275.0 641 33.1
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 8.9e-72 274.6 639 33.6
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 8.9e-72 274.6 639 33.3
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.2e-71 274.2 641 34.2
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.2e-71 274.2 638 33.2
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.5e-71 273.9 641 33.9
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 1.5e-71 273.9 639 34.0
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 2.0e-71 273.5 639 33.0
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 2.6e-71 273.1 639 33.5
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 2.6e-71 273.1 638 33.1
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 2.6e-71 273.1 639 33.5
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 4.4e-71 272.3 640 33.6
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 4.4e-71 272.3 638 32.8
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 7.5e-71 271.6 641 33.1
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 7.5e-71 271.6 639 34.0
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 7.5e-71 271.6 638 32.8
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 1.3e-70 270.8 644 34.3
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 1.3e-70 270.8 640 32.3
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 1.3e-70 270.8 639 33.8
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 1.7e-70 270.4 638 32.6
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 2.2e-70 270.0 646 32.8
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 4.9e-70 268.9 641 32.3
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 4.9e-70 268.9 644 33.1
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 6.3e-70 268.5 639 33.0
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 1.1e-69 267.7 642 33.6
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 1.1e-69 267.7 648 32.3
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 2.4e-69 266.5 640 33.3
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 2.4e-69 266.5 640 33.3
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 3.1e-69 266.2 639 33.6
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 9.2e-69 264.6 598 33.6
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 9.2e-69 264.6 641 33.1
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 1.2e-68 264.2 639 33.2
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.5e-68 262.7 639 32.6
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 3.5e-68 262.7 639 32.6
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 4.5e-68 262.3 639 31.5
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 4.5e-68 262.3 639 32.4
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 5.9e-68 261.9 601 34.4
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.7e-67 260.4 641 32.1
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.7e-67 260.4 645 31.6
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.7e-67 260.4 645 31.6
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 2.3e-67 260.0 646 31.4
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 2.9e-67 259.6 640 32.3
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 3.8e-67 259.2 640 32.3
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 5.0e-67 258.8 643 32.5
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 6.6e-67 258.5 644 31.7
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 6.6e-67 258.5 641 32.6
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 6.6e-67 258.5 641 32.4
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 8.6e-67 258.1 641 32.4
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.1e-66 257.7 639 32.7
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 1.5e-66 257.3 644 31.5
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.5e-66 257.3 648 31.2
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 1.9e-66 256.9 642 31.9
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.9e-66 256.9 639 31.9
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 3.3e-66 256.1 642 32.1
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 4.3e-66 255.8 639 32.6
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 5.6e-66 255.4 641 31.2
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 9.5e-66 254.6 639 32.4
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 1.2e-65 254.2 639 32.6
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 1.6e-65 253.8 646 31.4
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 1.6e-65 253.8 646 31.4
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 3.6e-65 252.7 608 32.9
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 3.0e-64 249.6 643 32.7
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 4.0e-64 249.2 645 31.2
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 4.0e-64 249.2 645 31.2
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 4.0e-64 249.2 686 30.2
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 1.2e-63 247.7 640 32.2
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 5.8e-63 245.4 642 30.8
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 5.8e-63 245.4 644 31.1
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 6.0e-60 235.3 639 30.4
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 1.7e-59 233.8 639 29.7
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 1.7e-59 233.8 614 32.1
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 3.3e-58 229.6 639 29.9
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 2.3e-56 223.4 642 30.5
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 2.0e-55 220.3 639 29.1
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 1.3e-54 217.6 592 32.3
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 4.1e-53 212.6 639 28.3
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 2.1e-52 210.3 191 59.7
Rhsim06G0014300 Rhododendron simsii HOM05D003747 ORTHO05D000001 2.7e-52 209.9 227 56.4
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 5.1e-51 205.7 633 28.8
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 1.1e-50 204.5 606 30.0
CsaV3_1G045460 Cucumis sativus L. HOM05D003747 ORTHO05D005080 1.5e-50 204.1 191 59.2
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 5.2e-48 195.7 646 27.2
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 9.9e-47 191.4 643 26.4
FAN14G4182 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.9e-46 189.9 192 56.8
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 4.6e-44 182.6 651 25.8
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 1.4e-40 171.0 191 51.3
CsaV3_1G045450 Cucumis sativus L. HOM05D003747 ORTHO05D005080 4.0e-40 169.5 243 43.6
CsaV3_UNG233290 Cucumis sativus L. HOM05D003747 ORTHO05D005080 4.0e-40 169.5 243 43.6
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 6.8e-40 168.7 191 50.3
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 3.4e-39 166.4 194 51.0
CsaV3_UNG233280 Cucumis sativus L. HOM05D003747 ORTHO05D005080 1.2e-36 157.9 164 56.1
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 6.6e-35 152.1 188 47.9
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 5.8e-31 139.0 206 44.2
HanXRQChr13g0424291 Helianthus annuus HOM05D003747 ORTHO05D005080 3.2e-29 133.3 140 55.0
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 3.2e-29 133.3 657 24.4
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 7.1e-29 132.1 655 23.8
HPP92_027213 Vanilla planifolia HOM05D003747 ORTHO05D005080 1.3e-27 127.9 188 42.0
C08p01770 Brassica napus HOM05D003747 ORTHO05D016772 2.5e-26 123.6 170 45.3
BolC8t46977H Brassica oleracea HOM05D003747 ORTHO05D016772 9.6e-26 121.7 177 44.1
TAR628G1670 Trochodendron aralioides HOM05D003747 ORTHO05D016772 1.4e-24 117.9 176 40.9
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 6.9e-24 115.5 313 31.0
BcaC07g36860 Brassica carinata HOM05D003747 ORTHO05D016772 1.7e-22 110.9 64 75.0
BcaC05g24429 Brassica carinata HOM05D003747 ORTHO05D016772 2.2e-22 110.5 62 75.8
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 2.4e-21 107.1 192 34.9
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 3.2e-21 106.7 175 36.0
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 1.2e-20 104.8 170 33.5
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.2e-20 104.8 496 24.4
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 1.8e-19 100.9 246 28.9
HPP92_027211 Vanilla planifolia HOM05D003747 ORTHO05D016772 1.9e-18 97.4 63 60.3
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 2.5e-18 97.1 226 30.5
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 4.8e-17 92.8 240 30.0
unitig_746.g26812 Utricularia gibba HOM05D003747 ORTHO05D016772 4.0e-16 89.7 60 63.3
unitig_899.g15538 Utricularia gibba HOM05D003747 ORTHO05D016772 6.9e-16 89.0 63 57.1
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 2.0e-15 87.4 233 29.2
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 2.5e-13 80.5 63 55.6
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 2.7e-12 77.0 63 55.6
HPP92_027212 Vanilla planifolia HOM05D003747 ORTHO05D051588 3.9e-11 73.2 137 32.8
Zm00001eb159680 Zea mays HOM05D003747 ORTHO05D029724 3.9e-11 73.2 82 42.7
Zm00001eb026790 Zea mays HOM05D003747 ORTHO05D029724 1.9e-10 70.9 82 42.7
FAN12G1591 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.1e-09 67.4 55 63.6
FAN05G3899 Fragaria x ananassa HOM05D003747 ORTHO05D005080 8.2e-09 65.5 52 65.4
FAN20G0559 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.8e-08 64.3 52 65.4
ATR0030G011 Amborella trichopoda HOM05D003747 ORTHO05D066495 2.9e-06 57.0 66 45.5


User provided reference genes

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