Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 2.8e-83 312.0 168 100.0
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 4.3e-60 235.0 166 73.5
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 3.7e-59 231.9 166 74.1
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 5.3e-58 228.0 166 73.5
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.5e-57 226.5 166 74.1
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 2.0e-57 226.1 166 71.7
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 2.0e-57 226.1 166 72.9
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 5.9e-57 224.6 166 71.7
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 7.7e-57 224.2 166 72.9
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.0e-56 223.8 166 71.7
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 1.0e-56 223.8 166 71.7
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.0e-56 223.8 167 70.1
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.0e-56 223.8 166 72.3
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 2.2e-56 222.6 166 71.1
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 6.5e-56 221.1 166 71.7
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 8.5e-56 220.7 167 72.5
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.1e-55 220.3 159 71.7
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.1e-55 220.3 167 69.5
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.9e-55 219.5 166 70.5
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.9e-55 219.5 166 69.9
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 2.5e-55 219.2 166 71.1
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 3.2e-55 218.8 166 69.3
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 3.2e-55 218.8 167 67.1
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 4.2e-55 218.4 166 71.7
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 5.5e-55 218.0 166 69.9
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 5.5e-55 218.0 167 70.1
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 5.5e-55 218.0 167 67.7
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 5.5e-55 218.0 166 67.5
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 9.4e-55 217.2 166 68.7
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 9.4e-55 217.2 166 69.9
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 9.4e-55 217.2 166 67.5
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.2e-54 216.9 167 68.9
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 1.2e-54 216.9 166 68.1
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 1.6e-54 216.5 166 68.7
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 2.1e-54 216.1 167 70.1
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.7e-54 215.7 167 68.3
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 3.6e-54 215.3 166 66.9
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 4.6e-54 214.9 166 69.9
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 4.6e-54 214.9 166 68.7
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 4.6e-54 214.9 168 69.0
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 6.1e-54 214.5 166 69.3
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 6.1e-54 214.5 168 67.9
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 6.1e-54 214.5 166 66.9
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.4e-53 213.4 165 69.1
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.8e-53 213.0 168 66.7
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 1.8e-53 213.0 166 68.7
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.9e-53 211.8 168 67.9
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 3.9e-53 211.8 169 69.2
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.1e-53 211.5 168 66.7
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 6.7e-53 211.1 167 69.5
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.5e-52 209.9 167 65.3
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.0e-52 209.5 166 66.9
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 2.5e-52 209.1 167 67.7
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 2.5e-52 209.1 168 68.5
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.5e-52 209.1 171 68.4
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 4.3e-52 208.4 168 66.1
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 5.7e-52 208.0 166 65.7
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 7.4e-52 207.6 166 65.7
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 7.4e-52 207.6 166 65.1
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 7.4e-52 207.6 166 65.1
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 9.7e-52 207.2 169 65.7
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 9.7e-52 207.2 167 67.1
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.3e-51 206.8 165 67.3
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.3e-51 206.8 167 66.5
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 1.3e-51 206.8 168 69.0
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 1.7e-51 206.5 167 67.1
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 2.8e-51 205.7 167 68.3
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 4.8e-51 204.9 166 64.5
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 6.3e-51 204.5 166 63.9
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 8.2e-51 204.1 173 65.3
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 8.2e-51 204.1 165 66.7
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.4e-50 203.4 167 64.7
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 1.4e-50 203.4 168 66.1
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.8e-50 203.0 168 66.1
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 1.8e-50 203.0 166 65.7
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 5.3e-50 201.4 167 67.7
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 5.3e-50 201.4 168 65.5
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 6.9e-50 201.1 167 64.7
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 9.1e-50 200.7 164 67.1
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.2e-49 200.3 167 63.5
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.2e-49 200.3 167 63.5
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.2e-49 200.3 167 64.1
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.5e-49 199.9 169 65.1
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.0e-49 199.5 167 64.7
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 2.0e-49 199.5 169 65.7
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 2.6e-49 199.1 167 63.5
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 4.5e-49 198.4 169 63.3
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 4.5e-49 198.4 169 63.3
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 4.5e-49 198.4 169 63.3
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 5.9e-49 198.0 167 62.3
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 7.7e-49 197.6 168 63.7
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.0e-48 197.2 167 64.7
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.0e-48 197.2 167 64.1
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.0e-48 197.2 167 63.5
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 1.3e-48 196.8 167 63.5
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.3e-48 196.8 159 63.5
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.7e-48 196.4 170 63.5
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.7e-48 196.4 167 63.5
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.7e-48 196.4 167 62.9
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.7e-48 196.4 167 62.3
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 2.2e-48 196.1 167 62.3
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 2.2e-48 196.1 167 62.3
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 2.2e-48 196.1 167 62.3
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.2e-48 196.1 169 63.3
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 3.8e-48 195.3 173 61.8
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 3.8e-48 195.3 167 62.9
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 3.8e-48 195.3 167 62.9
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 5.0e-48 194.9 173 61.8
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 5.0e-48 194.9 166 62.0
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 6.5e-48 194.5 167 62.9
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 6.5e-48 194.5 173 61.8
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 6.5e-48 194.5 167 62.9
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 6.5e-48 194.5 173 61.8
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 6.5e-48 194.5 173 61.8
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 6.5e-48 194.5 167 62.9
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 8.5e-48 194.1 165 64.8
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 1.4e-47 193.4 167 64.7
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 2.5e-47 192.6 168 61.9
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 4.2e-47 191.8 167 62.9
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 4.2e-47 191.8 164 62.8
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 9.4e-47 190.7 167 62.3
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 9.4e-47 190.7 166 63.3
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.6e-46 189.9 167 62.9
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 1.6e-46 189.9 167 63.5
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 2.1e-46 189.5 172 64.5
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 2.7e-46 189.1 157 63.7
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.7e-46 189.1 152 67.1
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.4e-45 186.8 166 60.2
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 2.3e-45 186.0 168 63.1
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 3.0e-45 185.7 149 64.4
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 3.0e-45 185.7 168 63.1
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 3.3e-44 182.2 172 61.6
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.3e-43 180.3 168 59.5
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.3e-43 180.3 168 59.5
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.7e-43 178.7 167 59.3
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.1e-42 177.2 168 63.1
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.4e-42 176.8 169 60.4
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.8e-42 176.4 102 82.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 7.0e-42 174.5 167 59.9
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 9.1e-42 174.1 168 57.1
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 1.6e-41 173.3 100 81.0
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 4.5e-41 171.8 102 79.4
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 4.5e-41 171.8 143 64.3
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 5.0e-40 168.3 169 59.8
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 8.5e-40 167.5 100 78.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 8.2e-35 151.0 175 52.0
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 7.0e-34 147.9 143 56.6
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.0e-29 132.5 169 45.6
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 8.8e-29 131.0 173 42.8
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 2.6e-28 129.4 170 44.1
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 9.8e-28 127.5 139 49.6
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.2e-27 126.3 169 41.4
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.2e-27 126.3 170 43.5
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.8e-27 125.9 70 80.0
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 4.8e-27 125.2 218 41.3
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.4e-26 122.9 70 77.1
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 1.6e-25 120.2 145 46.9
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 2.9e-24 115.9 168 44.0
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 3.6e-22 109.0 168 39.9
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 8.8e-21 104.4 157 41.4
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-20 103.6 67 74.6
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 1.4e-18 97.1 168 42.3
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.3e-16 89.7 81 55.6
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 6.1e-14 81.6 44 81.8


User provided reference genes

Program Settings