Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 3.1e-240 834.7 415 100.0
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.4e-205 719.5 411 84.4
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 9.6e-202 706.8 415 83.1
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.4e-200 703.0 415 80.5
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.8e-198 694.9 415 80.5
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.1e-197 693.3 415 79.3
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 7.9e-196 687.2 415 78.6
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 3.0e-195 685.3 412 78.9
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 7.4e-194 680.6 415 78.8
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 4.8e-193 677.9 412 79.1
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 1.1e-192 676.8 412 76.7
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.1e-192 675.2 412 76.9
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.2e-190 669.1 413 76.8
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 4.2e-189 664.8 405 78.0
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 5.5e-189 664.5 412 77.7
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 7.2e-189 664.1 410 78.0
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 9.3e-189 663.7 415 77.3
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 6.1e-188 661.0 417 75.8
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 6.7e-187 657.5 412 76.7
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 4.3e-186 654.8 414 76.1
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 6.5e-182 641.0 411 74.5
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 3.3e-178 628.6 414 71.5
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.8e-177 625.5 415 74.5
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.3e-174 616.7 412 73.5
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.0e-174 614.8 414 72.9
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 6.5e-174 614.4 414 71.7
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.6e-172 608.6 414 70.0
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 3.3e-170 602.1 412 70.4
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 2.8e-169 599.0 382 75.7
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 5.9e-167 591.3 413 67.8
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.2e-166 589.3 411 71.0
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 4.2e-165 585.1 415 70.1
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.2e-164 583.6 393 71.0
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 2.1e-164 582.8 410 69.8
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 8.0e-164 580.9 413 71.2
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 1.4e-163 580.1 409 68.7
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 6.7e-163 577.8 413 67.8
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 8.8e-163 577.4 413 68.5
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.6e-162 575.9 417 67.6
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 2.6e-162 575.9 417 67.6
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 1.7e-161 573.2 414 67.4
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 6.3e-161 571.2 417 67.6
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 3.8e-158 562.0 393 68.7
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.2e-155 551.6 404 65.1
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 1.5e-154 550.1 413 64.2
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 1.5e-154 550.1 417 63.3
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.0e-154 549.7 400 65.2
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.1e-152 543.9 410 63.7
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 1.1e-152 543.9 415 63.9
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 2.4e-152 542.7 415 63.4
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 3.1e-152 542.3 407 63.4
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 7.0e-152 541.2 418 62.9
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.0e-152 541.2 413 64.9
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.0e-152 541.2 413 64.9
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.6e-151 540.0 412 63.6
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.0e-151 539.7 411 63.0
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.7e-150 536.6 404 65.3
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.8e-150 535.4 322 78.3
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.5e-150 534.6 414 64.0
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.9e-149 533.1 370 69.7
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.1e-148 529.6 414 62.8
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 6.3e-145 518.1 399 61.9
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 7.0e-144 514.6 405 64.0
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.6e-143 513.5 364 73.9
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 3.8e-142 508.8 388 64.7
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 5.0e-142 508.4 410 60.2
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 3.3e-141 505.8 410 60.2
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.1e-140 503.1 390 63.8
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 2.1e-140 503.1 408 59.3
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 8.0e-140 501.1 392 63.3
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.5e-138 496.9 371 64.2
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 2.6e-138 496.1 410 60.0
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.4e-138 495.4 399 62.2
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.8e-138 494.2 376 63.3
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.2e-137 493.0 399 61.9
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.1e-136 490.7 409 61.1
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.4e-136 490.3 333 71.5
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 1.0e-134 484.2 411 58.2
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 3.0e-134 482.6 415 56.4
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 3.9e-134 482.3 412 58.5
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.5e-133 479.6 412 60.2
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 2.5e-133 479.6 409 56.2
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.3e-133 478.8 385 63.1
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.8e-132 476.1 393 61.3
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 2.8e-132 476.1 412 58.0
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 6.2e-132 474.9 384 63.8
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.4e-131 473.8 402 61.9
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 8.9e-131 471.1 355 67.3
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.8e-130 468.4 394 60.7
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.5e-130 468.0 411 57.2
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 2.2e-129 466.5 353 63.5
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.2e-127 460.7 389 59.4
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.0e-127 459.9 393 59.5
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.7e-126 456.8 413 55.2
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 5.0e-126 455.3 394 62.2
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.5e-125 453.8 410 55.4
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.9e-125 453.4 424 56.8
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 9.5e-125 451.1 390 60.5
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 9.5e-125 451.1 382 61.3
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 1.2e-124 450.7 412 58.0
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.6e-124 450.3 412 58.0
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.8e-124 449.5 390 60.3
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 8.1e-124 448.0 417 57.1
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.4e-123 447.2 414 57.2
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.3e-123 446.4 411 54.5
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 2.3e-123 446.4 424 55.2
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.0e-122 443.4 407 57.2
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.4e-122 442.2 415 55.2
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.5e-122 441.4 415 54.9
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 9.8e-122 441.0 421 55.8
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 1.1e-120 437.6 316 68.4
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 2.7e-119 433.0 412 53.6
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.5e-117 427.2 410 56.6
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.5e-117 427.2 392 53.8
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 1.6e-116 423.7 417 51.6
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 2.1e-116 423.3 394 53.6
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 6.2e-116 421.8 392 53.8
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.1e-115 421.0 392 53.6
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 3.1e-115 419.5 393 52.9
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 4.0e-115 419.1 393 52.7
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 4.0e-115 419.1 393 52.9
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 4.0e-115 419.1 393 52.9
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 3.4e-114 416.0 394 52.5
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.7e-113 413.7 381 53.5
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.2e-113 413.3 394 52.8
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 2.4e-112 409.8 418 49.5
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 2.1e-111 406.8 399 54.1
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.3e-109 398.3 331 61.9
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.2e-108 397.5 356 55.3
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 2.4e-107 393.3 383 56.4
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.9e-107 391.7 403 47.4
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.0e-106 390.2 404 47.8
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 4.3e-101 372.5 292 63.0
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.3e-101 371.7 409 48.7
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 2.8e-100 369.8 409 48.9
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 2.4e-99 366.7 366 50.5
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 5.3e-99 365.5 388 47.9
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 3.4e-98 362.8 367 51.2
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 7.6e-98 361.7 377 49.1
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 6.0e-95 352.1 403 45.2
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 1.3e-94 350.9 392 46.4
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.5e-93 347.4 370 46.2
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 6.4e-89 332.0 365 47.9
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.5e-87 326.2 277 62.5
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.1e-85 321.2 425 43.3
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 5.3e-83 312.4 289 54.7
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.5e-80 303.5 409 41.8
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 8.7e-78 295.0 369 44.4
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 4.5e-74 282.7 351 44.2
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.7e-73 280.8 233 57.5
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.0e-70 271.6 295 51.2
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.5e-69 267.7 414 38.4
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.7e-65 254.2 288 46.9
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 2.9e-57 226.9 358 38.8
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 6.5e-57 225.7 231 52.4
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 1.4e-56 224.6 181 58.6
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.9e-56 224.2 240 49.6
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.4e-51 208.0 203 54.2
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.5e-50 203.4 173 61.3
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 9.4e-48 195.3 307 40.1
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 3.3e-45 186.8 127 67.7
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 1.3e-44 184.9 129 67.4
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 8.2e-44 182.2 177 53.1
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 3.1e-43 180.3 186 52.7
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 8.8e-38 162.2 306 34.6
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 9.8e-37 158.7 135 55.6
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 4.5e-34 149.8 151 49.7
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 6.5e-33 146.0 346 32.9
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 7.2e-32 142.5 114 56.1
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.5e-21 108.2 74 68.9
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 1.7e-20 104.8 62 74.2
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 1.8e-14 84.7 348 25.9
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.9e-12 76.6 255 27.8


User provided reference genes

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